prot_H-paniculata_contig7002.14955.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig7002.14955.1
Unique Nameprot_H-paniculata_contig7002.14955.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length190
Homology
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BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 3.230e-13
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 0 
Query:   88 DQGVETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC 190
            ++ +E E+  +LE D Q TVV  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG I PD ETR  W G V  PE  P  +   +VSM+W   C
Sbjct:   60 EEEIEQELVAALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEP-PAGSAPRTVSMTWTNPC 162
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BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 1.600e-8
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 0 
Query:   91 VETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC 190
            VE  +   LE D+   V+  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG +LPD   R  W G V  PE   +    + VSM+W   C
Sbjct:  151 VEEGLVEVLETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDPEPSTNSIPRT-VSMTWTDPC 250
[Close]
BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: D8LMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 3.430e-6
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 0 
Query:   91 VETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWG 187
            VE E+   LE D+  TVV  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG ILPD  TR  +   + S       +  +SV  S G
Sbjct:   65 VEEELVEVLETDELTTVVGDIELGDLLCDSLEDASDSSLLRFTISSTETVIAERTSYSSIDGSILPDGNTRKTFLLKLVSRNSDGSTSIVTSVPCSAG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLU0_ECTSI3.230e-1339.42PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF50_9PHAE1.600e-834.65LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LMP1_ECTSI3.430e-635.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..22
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..22
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 23..190
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..26
score: 0.462

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7002contigH-paniculata_contig7002:3972..6020 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7002.14955.1mRNA_H-paniculata_contig7002.14955.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig7002 3972..8894 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig7002.14955.1 ID=prot_H-paniculata_contig7002.14955.1|Name=mRNA_H-paniculata_contig7002.14955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MKFAHSILPLVAPAFGSLAATAKVDGDLSESVKQRNLQISTEAPLQPPSP
APLTLAPVVAAQTLAPVVAPSGVVFAGIQKYEGGSGADQGVETEVTISLE
EDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTDEPITATLTSFTTVD
GGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC
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