mRNA_H-paniculata_contig7002.14955.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig7002.14955.1
Unique NamemRNA_H-paniculata_contig7002.14955.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: D8LLU0_ECTSI (PKD domain protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU0_ECTSI)

HSP 1 Score: 77.0 bits (188), Expect = 1.020e-12
Identity = 41/104 (39.42%), Postives = 63/104 (60.58%), Query Frame = 3 
Query:  414 DQGVETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC 722
            ++ +E E+  +LE D Q TVV  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG I PD ETR  W G V  PE  P  +   +VSM+W   C
Sbjct:   60 EEEIEQELVAALESDPQATVVVHIGLGELLCDSLEDASDSTLLRFNISSTETVIAERTSYSSIDGNIFPDGETRKTWMGEVVDPEP-PAGSAPRTVSMTWTNPC 162
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BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: A0A6H5JF50_9PHAE (LNR domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF50_9PHAE)

HSP 1 Score: 63.9 bits (154), Expect = 4.700e-8
Identity = 35/101 (34.65%), Postives = 56/101 (55.45%), Query Frame = 3 
Query:  423 VETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC 722
            VE  +   LE D+   V+  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG +LPD   R  W G V  PE   +    + VSM+W   C
Sbjct:  151 VEEGLVEVLETDELTAVMGDIELGDLLCDSLEDATDSSLLRFTISSTETVIAERTSYSSIDGNVLPDGNARKTWLGEVVDPEPSTNSIPRT-VSMTWTDPC 250
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BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Match: D8LMP1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMP1_ECTSI)

HSP 1 Score: 56.2 bits (134), Expect = 7.580e-6
Identity = 35/98 (35.71%), Postives = 55/98 (56.12%), Query Frame = 3 
Query:  423 VETEVTISLEEDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTD-EPITATLTSFTTVDGGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWG 713
            VE E+   LE D+  TVV  + +G L+CD+L +A D+ +L F ++  E + A  TS++++DG ILPD  TR  +   + S       +  +SV  S G
Sbjct:   65 VEEELVEVLETDELTTVVGDIELGDLLCDSLEDASDSSLLRFTISSTETVIAERTSYSSIDGSILPDGNTRKTFLLKLVSRNSDGSTSIVTSVPCSAG 162
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig7002.14955.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LLU0_ECTSI1.020e-1239.42PKD domain protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JF50_9PHAE4.700e-834.65LNR domain-containing protein n=2 Tax=Ectocarpus s... [more]
D8LMP1_ECTSI7.580e-635.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig7002contigH-paniculata_contig7002:3972..8894 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons5
Model size722
Cds size570
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig7002.14955.1prot_H-paniculata_contig7002.14955.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig7002 3972..6020 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.1642325-CDS-H-paniculata_contig7002:3971..40581622930844.1642325-CDS-H-paniculata_contig7002:3971..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 3972..4058 -
1691481477.9718604-CDS-H-paniculata_contig7002:3971..40581691481477.9718604-CDS-H-paniculata_contig7002:3971..4058Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 3972..4058 -
1622930844.183198-CDS-H-paniculata_contig7002:4449..45211622930844.183198-CDS-H-paniculata_contig7002:4449..4521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 4450..4521 -
1691481477.98246-CDS-H-paniculata_contig7002:4449..45211691481477.98246-CDS-H-paniculata_contig7002:4449..4521Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 4450..4521 -
1622930844.200925-CDS-H-paniculata_contig7002:4946..50381622930844.200925-CDS-H-paniculata_contig7002:4946..5038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 4947..5038 -
1691481477.9917824-CDS-H-paniculata_contig7002:4946..50381691481477.9917824-CDS-H-paniculata_contig7002:4946..5038Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 4947..5038 -
1622930844.219255-CDS-H-paniculata_contig7002:5701..60201622930844.219255-CDS-H-paniculata_contig7002:5701..6020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 5702..6020 -
1691481478.0048184-CDS-H-paniculata_contig7002:5701..60201691481478.0048184-CDS-H-paniculata_contig7002:5701..6020Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig7002 5702..6020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930844.2348056-UTR-H-paniculata_contig7002:6020..60841622930844.2348056-UTR-H-paniculata_contig7002:6020..6084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7002 6021..6084 -
1691481478.0209002-UTR-H-paniculata_contig7002:6020..60841691481478.0209002-UTR-H-paniculata_contig7002:6020..6084Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7002 6021..6084 -
1622930844.2527928-UTR-H-paniculata_contig7002:8806..88941622930844.2527928-UTR-H-paniculata_contig7002:8806..8894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7002 8807..8894 -
1691481478.030853-UTR-H-paniculata_contig7002:8806..88941691481478.030853-UTR-H-paniculata_contig7002:8806..8894Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig7002 8807..8894 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig7002.14955.1

>prot_H-paniculata_contig7002.14955.1 ID=prot_H-paniculata_contig7002.14955.1|Name=mRNA_H-paniculata_contig7002.14955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=190bp
MKFAHSILPLVAPAFGSLAATAKVDGDLSESVKQRNLQISTEAPLQPPSP
APLTLAPVVAAQTLAPVVAPSGVVFAGIQKYEGGSGADQGVETEVTISLE
EDDQVTVVSSVNVGALVCDTLPEAVDADILLFRVTDEPITATLTSFTTVD
GGILPDSETRHLWQGTVTSPEMGPDQAEASSVSMSWGVDC
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mRNA from alignment at H-paniculata_contig7002:3972..8894-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig7002.14955.1 ID=mRNA_H-paniculata_contig7002.14955.1|Name=mRNA_H-paniculata_contig7002.14955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4923bp|location=Sequence derived from alignment at H-paniculata_contig7002:3972..8894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AACACAAAACAGCTACACGCCGTGTCGGTCCACACCACTCTCACCACTTT
CCCTCAGAGCTGTCTCTTCTGTGGAATCACTCACAGAGGTGAGTGCGCGT
TGCTGTCGCGTGTATCATTTGCAGCCATCGCACAGACCGACGTAGACTGA
CTATTTAGGTAGACTGCCCATCGGAATCTTTTGTGGCAGCACCCAAGCTA
GCCCTCGAGTTGCCAAGCAGCTCCAACAGGTGTGATTTATTTGTGTTTAC
AACATAATTAATTGCTGCTACCGCTGTAAAACAGTAGAAGACGCTCCGTT
GAGATACTCCAGTACAGACAGGATGCACTCAGTGTCAGTACCAACAGTGT
GCACGGGTAACATTGTAGGAGACACTCGCGTGGTCTTGGACAATATTGAC
CGCATACGGATGTATGACTGCTCAATACAAGAGGTCACACGTCGCATTGA
CTGATTGCGGATGCCTGATGGGCAGTAGCACAGGTACTTGCAGTTTGGGC
TTTTTTAATTCTCTTCATAGTACAGCGTCCGTGTCCCAACCGCGCGGAAC
GTATAGCCATCTTTGGCTCAACTATTGTCGGTCACGGCAGGCAGTGATGA
TGATGCTGAGGCAGGTGGTGCAGGTTAAGGTGGCGCACAAGTCGCGGTAG
CGGGAGGGGGAAATATAGAACAACGATACAGATCTGCCCTTTGGCGTTCG
AGAACAAAACCATTCGCCAGATTGTTTTGTGATAAAACTTGCTGCATAGT
GTCGTGTGTACAATTGGTACTGACTGCAGTAAACTTACCGTCGCGATTTT
GAACTCTTTCCACTGTGTCAGCTCTTTTATGCAAGGTAGGGATAGCACAA
ACAACGACGGTGCGGTACCACAGTTTAATCCTTTCAGATAACACAACATT
TACTTGACAAGAATCCTACCCTTGTAAGTTGTTCGAGAAATCCAAGTAGT
TTAGCTCGCAGATGCACTTTTGATGGAGAACCAGAGTCAGCATAGAGCTA
AATGTCTAATTCTGTCTCTTGTGAGAAGGGTAAACAATTTTTCATGGCCG
TCTTTATGGAGAGATAAGACAGACATACAGAAAGATGGAGGGGAAGCAGG
TCAACATATGCGTACTAGTACCACTAGGAATTGATAAACGAGTTATCCCT
CATCTATTGTGTTTGACTGCGAAATATAGGTGTAGGTATTGTGTGCATAG
CTTTGTCGTCCCGAGGTACCTACTTGACCTGGAGAGATAGGTTTCCACAC
AAATCCGTACATATCACACCTACTCATGTCAAAAGGCAGGACAAAACTAC
AACGCACATCACATATGATTACGGGCCATATGCCCAGTCGAGTATATACA
GTACATCACGTACACAAACAGGGAGTTGGCAAGGGTCTACTTATGACGGC
TCTCTGTAGAGCTCGCCTGTTATCGCTATACCCTCATCACACTCATGTAT
TGATGGGAGCCTCAAGTTCACAATGCACTTCATCTCTGGTTGTCCTTGAA
AATTACTCCAGTTCATATTTTTGCCTCTTTCTTTGGGGGTCTTCACTATC
GTCTAACGCATTTTTCACCTAGATCCCACATATCAACGTTCACGCAACAG
TTCACAACGGGTGTTCTCCCAGAACCCTCCGACGACGAGAGGAGGCTCAA
TTTACATTGCAGAAATGGGGACACCACCTGTAGGATGACTGGACACAATG
GATCACCTCACCCGGATGCATATGTGAATTTTTTCGGGTATATATGTAGG
GAACGCCGTTTGGCGCTGAGGGAAAGATAAGCATATGTTTACAATGTCCA
GCAGGGATTGATCGAGATACAGTGGGGTCAGTCAGGATGATGAGTCATTC
GAAGAAGCGATTTGCGAGCAAAATTAGCGTTGCCCCAAACAACAGAACGG
GACCCAGAAATATCCGATGTGCATAATGATGCTTCAAACAACTTCGTCGC
TCACTCATTCTCTTCTGCTGTAGTCATAGTATTTACGAATCGCAAACCTT
CGTTTCCCTCCACATACAGAGAAATTCGACATAGCATCTCTAGTGAAATT
TGAGGAGCCTGATCGATGGTTTGGTATGATACTTCCGTTTGGTTTTGTTC
AACCATCTACGAGCTCCACAAAACATACCGTGGAACATTGGATATTCGTG
ATACTCCGAATCATTTTCTGTCGGCAGCTGAGCGCGGGAAAATCACAATG
CCCTACCTGCTGTAACAACCAAGTGATTTCCTGCCCCGAGATACGAGATC
ACTGTTGGTCCGTTGACACATCTGAACCTTCCTAGAATGAGGGGTATTCC
GTTGGGGGAAAGAAAAGGTTGATGGCTCGGAGTTGTTACAAGAGTTTTCT
CCAGCGGAAGCATATGTTAATATTGAGTTGTATGATCAACTACTCTTACT
CTCACCAATGCACTTTTAGAATATCCTGACACTTGAATGCCCCGTCCTTC
CAGTCTCCAATATCATTTTGCTCACATCAATTTATTTGACTTCACGTTCA
TTTTTTCTGCAAATATTTCTACTGTACCCGCCCTTCATCTGGGATCTTTA
ATGCAGGAATTGTCGATAAAGAATAATTATTATTACTTCAATCTTGTCAG
ATGACCATACAATATGTTCTGGTTGCGGTCAAGAGTTGTCACATCCTTCT
AAGTTCCCCAATTTCCTCCCCCCTCCTACCCTTCAGCCCCTCCAGCACAA
ACCTTTCCATTGTCCCAAACTCCTACTGCCGCTCCTGCTGCTTCGCCCTG
GCACTTGCATAAACGCTTCTTCTCCTTCGTCTTCATTGTATGGTTTCCTT
TTTTCCGTAGGGACAAGACAATAAACGGCGTCCAACAGCTCAATTGTCCG
CTGCGAGGCGTCACGTAGCAAGCGATGAAATTTGCGCACAGCATCCTCCC
GCTGGTCGCGCCGGCCTTCGGCAGCCTCGCGGCAACAGCTAAAGTCGACG
GAGACCTCAGCGAGTCGGTGAAGCAGCGAAATTTACAGATCTCAACGGAA
GCCCCCTTGCAGCCGCCGAGTCCGGCGCCGTTGACGCTGGCGCCAGTTGT
GGCGGCGCAGACGCTGGCGCCGGTTGTGGCACCCTCAGGTGTAGTCTTTG
CTGGTATTCAGAAATATGAGGGAGGATCCGGGGCTGACCAAGGGGTGGAG
ACCGAGGTGACGATAAGCCTTGAAGAAGATGACCAGGTCACAGGTGCGAA
TAAGGACAACGAAAATACTACTGTATCGCAATTATAGTAGTATATAGGTG
GTACTCAACTCTTGACAGGGGATCAGGTTTTGCATGACACTCGAAAGAGC
ATCTGCTACCCATGTATACCTACATATGTTTGACCGCGTCAACCCTCTGA
CCGTAACGACTGTTCCATGCCCGAATGGATGTATGCGATTACTTCTGCAC
CGAATATCCCGAATGGTCTTGAGTTCCTGTTTTGCGTCTTGCCCGTTTCC
TGGTATAATTTTTGAACCCACCAATAGAGGGTCGGTTGCGGCGAAAAAAA
GGTTTAGAGCGCCCCCCATAGAGGGGGGCAGAGGTAGGTCTCCATGGGAG
CTTATATGCCGAAAATATCACAAACACGATCAGCAATGAATACCGCTCCG
TTGAAGACAGTACACGGAGCTCTGCTATGGTGTATATTGGCGTACAGCAG
CAACATTTAATTTTTCATCTACCGTTGAAGGGATAGCTTTGAAGCTATGT
TCAATAGAATCTACATGCATATAGATCGTAAGTATATTCATATTGAGATA
TCACGGGATGAATTTCTCCATGAACCGAAAACATGCACGTGCAGTTCTCT
CACTACCTGTCCTTCACGCGTCGCAACCGCCACGATGACCTGTCTCTTCA
ATGTAGTGGTGAGTTCGGTGAACGTCGGGGCGCTGGTATGCGACACCCTG
CCGGAAGCCGTGGACGCCGACATCCTTTTGTTCCGTGTGACGGACGAGGT
GAGTGAGTGAAGTTTGGGTTCTACAGCGGCATTGAAACAAGTAAAACCTA
GAAAACGTCCAACTTTATCCTGTGTCAAAGTAAAATCGGTCGAGCGTGCA
GGGGCTTGTAAACGTCTTCATCATTTTTTTGTGAATATTCCTATATGGTC
TTGGGTTTGATCCCTGTTGTGCTCCAAGTAATTTTGCACGGCAAAATCAC
TCCACCCTGAAATGCCGGTATAGTTACTAAGAATTCGGATTTCTTGACCA
AGTGGGTAGATTATATGCCAGGTGTTCGTTACAAATATTCCCTGCAGGTC
CATGCAATGTCCATGCACGTGCGTAACATACACAGATGATACATTCATCC
TCTCCCCCAATCCCCCCAACCGTAATTCTCCCTCCCGCCGTTATATTTTC
CGTAATTTCCGCGGCATGGCCAGCCTATCACAGCGACACTGACCTCCTTC
ACCACCGTCGATGGTGGCATCCTACCGGACTCTGAAACTCGGCACGTAAG
TCTCGTTCCGACTGCAGGCAGATGGAGTAGCCTAGCATAATTGGCTACTC
AATTATCGCGAGTACTGGTTGATCCGTATCATCTCGCTGATCCATGGGCG
TCGGGAGATAAGTAGAACGCAAACGGAAGAACACTGCGTAATGATTATGA
AGTGATGGGGGTGAAGAGCGAAGGGTTGGCTATATGGGTGGATCTACTCT
CCTTGTGCTTTTTGTTTTGTAATTCTACCAGTATGATACGGCCCAAATCT
GTTGCACAACACAGACTGAAACGTGTTACACCTGAATATGTGAAGCCTTC
AAGCTATAAGAGCATCGGTTGTGATCACTTTTTTGCAAACTGGATTGCAT
AAACTCCCCGAACCGTGCTTTTGGTGTGTCTTGCAGTTATGGCAAGGTAC
GGTGACCTCGCCCGAGATGGGTCCTGATCAAGCGGAAGCGAGCAGCGTGA
GCATGTCATGGGGCGTTGATTGT
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Coding sequence (CDS) from alignment at H-paniculata_contig7002:3972..8894-

>mRNA_H-paniculata_contig7002.14955.1 ID=mRNA_H-paniculata_contig7002.14955.1|Name=mRNA_H-paniculata_contig7002.14955.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1140bp|location=Sequence derived from alignment at H-paniculata_contig7002:3972..8894- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAATTTGCGCACAGCATCCTCCCGCTGGTCGCGCCGGCCTTCGGCAG
CCTCGCGGCAACAGCTAAAGTCGACGGAGACCTCAGCGAGTCGGTGAAGC
AGCGAAATTTACAGATCTCAACGGAAGCCCCCTTGCAGCCGCCGAGTCCG
GCGCCGTTGACGCTGGCGCCAGTTGTGGCGGCGCAGACGCTGGCGCCGGT
TGTGGCACCCTCAGGTGTAGTCTTTGCTGGTATTCAGAAATATGAGGGAG
GATCCGGGGCTGACCAAGGGGTGGAGACCGAGGTGACGATAAGCCTTGAA
GAAGATGACCAGGTCACAGATGAAATTTGCGCACAGCATCCTCCCGCTGG
TCGCGCCGGCCTTCGGCAGCCTCGCGGCAACAGCTAAAGTCGACGGAGAC
CTCAGCGAGTCGGTGAAGCAGCGAAATTTACAGATCTCAACGGAAGCCCC
CTTGCAGCCGCCGAGTCCGGCGCCGTTGACGCTGGCGCCAGTTGTGGCGG
CGCAGACGCTGGCGCCGGTTGTGGCACCCTCAGGTGTAGTCTTTGCTGGT
ATTCAGAAATATGAGGGAGGATCCGGGGCTGACCAAGGGGTGGAGACCGA
GGTGACGATAAGCCTTGAAGAAGATGACCAGGTCACAGTGGTGAGTTCGG
TGAACGTCGGGGCGCTGGTATGCGACACCCTGCCGGAAGCCGTGGACGCC
GACATCCTTTTGTTCCGTGTGACGGACGAGTGGTGAGTTCGGTGAACGTC
GGGGCGCTGGTATGCGACACCCTGCCGGAAGCCGTGGACGCCGACATCCT
TTTGTTCCGTGTGACGGACGAGCCTATCACAGCGACACTGACCTCCTTCA
CCACCGTCGATGGTGGCATCCTACCGGACTCTGAAACTCGGCACCCTATC
ACAGCGACACTGACCTCCTTCACCACCGTCGATGGTGGCATCCTACCGGA
CTCTGAAACTCGGCACTTATGGCAAGGTACGGTGACCTCGCCCGAGATGG
GTCCTGATCAAGCGGAAGCGAGCAGCGTGAGCATGTCATGGGGCGTTGAT
TGTTTATGGCAAGGTACGGTGACCTCGCCCGAGATGGGTCCTGATCAAGC
GGAAGCGAGCAGCGTGAGCATGTCATGGGGCGTTGATTGT
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