prot_H-paniculata_contig6941.14884.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6941.14884.1
Unique Nameprot_H-paniculata_contig6941.14884.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length117
Homology
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BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.390e-14
Identity = 57/140 (40.71%), Postives = 66/140 (47.14%), Query Frame = 0 
Query:    3 YQLPIECQATYDERWRALATLFAMPAVKKVIFNAQVALMPFIAWTMTAKTEATLPSDEPISSSFPAESTSSTG---------------------------DTSMPASVLGLFDPRVAAWMTDTGSTEKALEFEALCHSRL 115
            Y LP++C+ +YDERW A A L A+P VKKV      ALMP IAW              P S +F A S +                               T    +V GLFD RVAAWMTDTG  +KALEFEALC S L
Sbjct:  566 YHLPLDCETSYDERWAAFAKLVALP-VKKV------ALMPLIAWRR-----------RPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSTKHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWL 687
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BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.170e-5
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 0 
Query:   83 VLGLFDPRVAAWMTDTGSTEKALEFEALCHSRL 115
            V  LFD RVAAWMTDTG  +KALEFEALC S L
Sbjct:  605 VSRLFDTRVAAWMTDTGKADKALEFEALCVSWL 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK42_ECTSI1.390e-1440.71DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE5.170e-575.76POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6941contigH-paniculata_contig6941:3727..6156 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6941.14884.1mRNA_H-paniculata_contig6941.14884.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6941 3727..6157 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6941.14884.1 ID=prot_H-paniculata_contig6941.14884.1|Name=mRNA_H-paniculata_contig6941.14884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
GEYQLPIECQATYDERWRALATLFAMPAVKKVIFNAQVALMPFIAWTMTA
KTEATLPSDEPISSSFPAESTSSTGDTSMPASVLGLFDPRVAAWMTDTGS
TEKALEFEALCHSRLPP
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