mRNA_H-paniculata_contig6941.14884.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6941.14884.1
Unique NamemRNA_H-paniculata_contig6941.14884.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Match: D7FK42_ECTSI (DNA-directed DNA polymerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK42_ECTSI)

HSP 1 Score: 78.6 bits (192), Expect = 1.390e-14
Identity = 57/140 (40.71%), Postives = 66/140 (47.14%), Query Frame = 1 
Query:    7 YQLPIECQATYDERWRALATLFAMPAVKKVIFNAQVALMPFIAWTMTAKTEATLPSDEPISSSFPAESTSSTG---------------------------DTSMPASVLGLFDPRVAAWMTDTGSTEKALEFEALCHSRL 345
            Y LP++C+ +YDERW A A L A+P VKKV      ALMP IAW              P S +F A S +                               T    +V GLFD RVAAWMTDTG  +KALEFEALC S L
Sbjct:  566 YHLPLDCETSYDERWAAFAKLVALP-VKKV------ALMPLIAWRR-----------RPESRTFLARSAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXHLSTKHHTTVSGLFDTRVAAWMTDTGKADKALEFEALCVSWL 687
[Close]
BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Match: A0A6H5J5W8_9PHAE (POLAc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5W8_9PHAE)

HSP 1 Score: 51.2 bits (121), Expect = 5.170e-5
Identity = 25/33 (75.76%), Postives = 26/33 (78.79%), Query Frame = 1 
Query:  247 VLGLFDPRVAAWMTDTGSTEKALEFEALCHSRL 345
            V  LFD RVAAWMTDTG  +KALEFEALC S L
Sbjct:  605 VSRLFDTRVAAWMTDTGKADKALEFEALCVSWL 637
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6941.14884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FK42_ECTSI1.390e-1440.71DNA-directed DNA polymerase n=1 Tax=Ectocarpus sil... [more]
A0A6H5J5W8_9PHAE5.170e-575.76POLAc domain-containing protein n=1 Tax=Ectocarpus... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6941contigH-paniculata_contig6941:3727..6157 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score78.6
Seed ortholog evalue2.2e-12
Seed eggNOG ortholog2880.D7FK42
Preferred namePOL1A
KEGG rclassRC02795
KEGG koko:K02335,ko:K02349
KEGG ReactionR00375,R00376,R00377,R00378
KEGG Pathwayko00230,ko00240,ko01100,ko03030,ko03410,ko03420,ko03440,map00230,map00240,map01100,map03030,map03410,map03420,map03440
Hectar predicted targeting categoryother localisation
EggNOG free text desc.plastid DNA replication
EggNOG OGsCOG0749@1,KOG0950@2759
EC2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03032,ko03400
Exons3
Model size354
Cds size351
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6941.14884.1prot_H-paniculata_contig6941.14884.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6941 3727..6156 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930834.4636285-CDS-H-paniculata_contig6941:3726..37561622930834.4636285-CDS-H-paniculata_contig6941:3726..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 3727..3756 +
1691481473.3772752-CDS-H-paniculata_contig6941:3726..37561691481473.3772752-CDS-H-paniculata_contig6941:3726..3756Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 3727..3756 +
1622930834.477239-CDS-H-paniculata_contig6941:4308..43891622930834.477239-CDS-H-paniculata_contig6941:4308..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 4309..4389 +
1691481473.391773-CDS-H-paniculata_contig6941:4308..43891691481473.391773-CDS-H-paniculata_contig6941:4308..4389Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 4309..4389 +
1622930834.492879-CDS-H-paniculata_contig6941:5916..61561622930834.492879-CDS-H-paniculata_contig6941:5916..6156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 5917..6156 +
1691481473.399893-CDS-H-paniculata_contig6941:5916..61561691481473.399893-CDS-H-paniculata_contig6941:5916..6156Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6941 5917..6156 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6941.14884.1

>prot_H-paniculata_contig6941.14884.1 ID=prot_H-paniculata_contig6941.14884.1|Name=mRNA_H-paniculata_contig6941.14884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=117bp
GEYQLPIECQATYDERWRALATLFAMPAVKKVIFNAQVALMPFIAWTMTA
KTEATLPSDEPISSSFPAESTSSTGDTSMPASVLGLFDPRVAAWMTDTGS
TEKALEFEALCHSRLPP
back to top

mRNA from alignment at H-paniculata_contig6941:3727..6157+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6941.14884.1 ID=mRNA_H-paniculata_contig6941.14884.1|Name=mRNA_H-paniculata_contig6941.14884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=2431bp|location=Sequence derived from alignment at H-paniculata_contig6941:3727..6157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGTATCAGCTGCCGATCGAGTGCCAGGTAGGTGATACTTTGCGGTT
TTTTGTAAAAAGCCATGTCGATTTCTTTTTGTTGGTGAGCCGGTTTCACT
ATTACCATCATTTTGCTCAGGCGGTAGAGTAGTACAGCCGTGGCTATGTC
CGTGTGGACCGTATGTTTCCTCGTTCCCATTTTCTCGGAGTCCATGTCAT
GGCCCACGCGCGACGGCTTACTGTGCTCGCAGTGATTTGCCTTGCTCGCA
CGAAGGTTCCAAATATATAAATTTGCTAACTTCAGAATATAAAAATATTG
CCAAACGACTGCAACCTTTATCATCACTACCACTACTATCACCACCACCA
CCACCACCACCACCACCACCACCACCACCACCACCGCTATTACCGCATCA
GTTTTGTTGCAACCATCAATGCCCGCGTCCTACTACACCCTGTGGTCACA
GCTTGCTCTATGTGTGCGTCGGAACACCGCGTCTGTCGCCGTAGAACCTC
GTAAACTCCCTCACACTGAAATCCTTCACGGCAACGCACACCCAACTCAA
GGCACCAATTGTTACATTGGCTTGCAAAACAGGCTACGTACGACGAGCGG
TGGCGAGCACTGGCGACCCTTTTTGCCATGCCGGCTGTGAAAAAAGTGAT
ATTCAATGCACAGGTATGCTTACATTTCGTTTGGTGACCGAATACGCAAG
GTTTTCCAGGACAAGGTAGTGCGGTTGAGAAGCTATGGTTGGGAGTACGT
AGCTTTTCCACCGGAACGCACGCTCCAAATCCTTGCTTGGCCCCGAACGG
AGAGGAGCATGCGTGTTATCAGTTCTTGAAAAACCAACCTACAAATTTGC
TAATCGCTTAAAAAGGGTTGTTATTAAAGACAATGAAAGTCACAATTAAT
AATTTAATTATATGGATTAAATCAGGCTCTACGGTACGTCAAGCTTGTGA
GGCTATTGGAGAAAAGATAACTCGTTTTTGTTACCATAAAGAACTTTTTA
TAGCTGGTAATTGTAGAATGTGTTTTGTTGAAGTAGGTAATTCTCCAAAA
CCACAAGTTCTTGTGCTTTATGTGCTCGACGGGAAAAATAACGTTTCCCT
CGTCCTACACTAGGTTGTCTTGTTTGGAAATAGGGTGTAACCACATGCTT
GCGGTGCTGTTGGGGAATCGGGGTTTCGTGTGGGTAAGTAAGGTCGTTTG
GATAGCATACGGGACCCCTGTGTAGGTGGTGTGTATAGGGTGGGTACTCC
TGCATAAAGTACCACGGTTGTTGAAGGTGAACTCGTACATGCTTGCACGA
CTTGATGGAGGAATAGGGTTTGGCGTTGGTATGTTTGTTTTGATCACATC
AGGTAATCCTTCATGAGGTACCCCATCATAGGGTAGTGTGGTGTATACAC
GTGCATAGACCTTACGCGTATGTTGAGGTAAAAGAGATAAAAGGGTAGGT
AGGGTTGGTTTTGAGCAGGTTCGTTTGATTAAAGCAGCCGGCGCTATAGA
GCCTACAAGGTACCCCAGTACGAGGTATCATCGTTGGAACCTTATACATG
GGTGCATTACCTGTTCGGTCAGAAGGGTTTTGCATTGGGACTATCCTTGA
AGAAGATACTGCACGTCAAGTCTATAGGGTGCCTTATACAGGACCGCCTA
CAGTTTCGATTTCCATTTCTGGGGTGTTTTGTTCTTTTTTAACCCCCGGA
AGGCTGAGGCAAAACCCTTTACCGATGCTTTCATACTTGAGTATTTTACC
GAAGTATTTCTACATTCCTAACAGAACAGAGTTATTTGTTCCTCTGCGGG
GTAGGCGCCACCCCAGTTCGGCCGAACCAAGTAGGCAGTGTGGGGGTTGC
ACCCACTAAAAGACCTCTGACTAGACTTCCAGTCATAGTTCAGGAGCTAC
CGTACCTGTTCGGGCGTAGGTCCGTGGTTTCCGGGGTGTGTATTAGGGGT
TTATTGGTTGTTTCGTGGGGCCACACGAGTGCGAATGTTTTGAAAATCCT
GAACAGGGTGGCGTGTTGTCAGTAGTGGCTCCCATTTTTCATTGAAAATA
TGACTGCACATATAAGTTTAGAAATATTTTCATTTTATCTCCTCTGTCAG
TAACTGTGGTCCTACTCAGTTCAGTACGAGGATGATCGCCCCCGTCCACC
TCCCGAATCTTGACCCCACCCCCCTCCATCTGTCCTTTAGGTCGCCCTCA
TGCCTTTCATCGCCTGGACAATGACTGCCAAAACCGAGGCAACCTTGCCC
TCTGATGAGCCAATATCATCATCCTTCCCAGCCGAGTCCACTTCGTCCAC
GGGTGATACGAGTATGCCGGCGAGTGTTTTGGGCCTCTTCGACCCGCGGG
TGGCCGCGTGGATGACGGACACCGGGAGCACGGAAAAGGCTTTGGAGTTC
GAGGCTCTCTGTCACTCCAGGTTGCCCCCTG
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig6941:3727..6157+

>mRNA_H-paniculata_contig6941.14884.1 ID=mRNA_H-paniculata_contig6941.14884.1|Name=mRNA_H-paniculata_contig6941.14884.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=702bp|location=Sequence derived from alignment at H-paniculata_contig6941:3727..6157+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
GGGGAGTATCAGCTGCCGATCGAGTGCCAGGGGGAGTATCAGCTGCCGAT
CGAGTGCCAGGCTACGTACGACGAGCGGTGGCGAGCACTGGCGACCCTTT
TTGCCATGCCGGCTGTGAAAAAAGTGATATTCAATGCACAGGCTACGTAC
GACGAGCGGTGGCGAGCACTGGCGACCCTTTTTGCCATGCCGGCTGTGAA
AAAAGTGATATTCAATGCACAGGTCGCCCTCATGCCTTTCATCGCCTGGA
CAATGACTGCCAAAACCGAGGCAACCTTGCCCTCTGATGAGCCAATATCA
TCATCCTTCCCAGCCGAGTCCACTTCGTCCACGGGTGATACGAGTATGCC
GGCGAGTGTTTTGGGCCTCTTCGACCCGCGGGTGGCCGCGTGGATGACGG
ACACCGGGAGCACGGAAAAGGCTTTGGAGTTCGAGGCTCTCTGTCACTCC
AGGTTGCCCCCTGTCGCCCTCATGCCTTTCATCGCCTGGACAATGACTGC
CAAAACCGAGGCAACCTTGCCCTCTGATGAGCCAATATCATCATCCTTCC
CAGCCGAGTCCACTTCGTCCACGGGTGATACGAGTATGCCGGCGAGTGTT
TTGGGCCTCTTCGACCCGCGGGTGGCCGCGTGGATGACGGACACCGGGAG
CACGGAAAAGGCTTTGGAGTTCGAGGCTCTCTGTCACTCCAGGTTGCCCC
CT
back to top