prot_H-paniculata_contig69222.14857.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig69222.14857.1
Unique Nameprot_H-paniculata_contig69222.14857.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length199
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69222.14857.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 110..144
e-value: 4.3E-8
score: 30.9
coord: 5..39
e-value: 2.3E-8
score: 31.7
coord: 41..73
e-value: 2.9E-5
score: 21.9
coord: 145..179
e-value: 1.1E-4
score: 20.2
coord: 75..109
e-value: 7.0E-4
score: 17.6
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 107..156
e-value: 1.6E-12
score: 47.4
coord: 2..50
e-value: 1.8E-12
score: 47.3
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 75..104
e-value: 0.0089
score: 16.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 143..177
score: 10.457
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 108..142
score: 12.003
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 38..72
score: 11.498
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 73..107
score: 9.734
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 3..37
score: 12.902
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 88..197
e-value: 2.0E-30
score: 108.4
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..86
e-value: 8.5E-27
score: 95.7
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 2..130
coord: 106..188

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69222contigH-paniculata_contig69222:112..708 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69222.14857.1mRNA_H-paniculata_contig69222.14857.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig69222 112..711 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig69222.14857.1 ID=prot_H-paniculata_contig69222.14857.1|Name=mRNA_H-paniculata_contig69222.14857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MPDVVTYNATIGACAKCSQWEKALELLAQMRAEGFAPDSRSYNLTIRALG
KGGQREEALEMLTSMEGEGVPPSIISYNAAIAACGEGGQWQRAIGLLPQM
RGANVIPNVVSYRAVITAFGKGGQWQRALDMLSEMEAQGVTPDVVSFNAV
ITACANCVQWEKGLDVLREIDAAGLEPNVVSYDTAMKACEDCGEGSTP*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf