mRNA_H-paniculata_contig69222.14857.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig69222.14857.1
Unique NamemRNA_H-paniculata_contig69222.14857.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig69222.14857.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig69222contigH-paniculata_contig69222:112..711 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size600
Cds size597
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.4271781-CDS-H-paniculata_contig69222:111..7081622930831.4271781-CDS-H-paniculata_contig69222:111..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69222 112..708 -
1691481472.032511-CDS-H-paniculata_contig69222:111..7081691481472.032511-CDS-H-paniculata_contig69222:111..708Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig69222 112..708 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930831.4395835-UTR-H-paniculata_contig69222:708..7111622930831.4395835-UTR-H-paniculata_contig69222:708..711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig69222 709..711 -
1691481472.0504377-UTR-H-paniculata_contig69222:708..7111691481472.0504377-UTR-H-paniculata_contig69222:708..711Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig69222 709..711 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig69222.14857.1prot_H-paniculata_contig69222.14857.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig69222 112..708 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig69222.14857.1

>prot_H-paniculata_contig69222.14857.1 ID=prot_H-paniculata_contig69222.14857.1|Name=mRNA_H-paniculata_contig69222.14857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=199bp
MPDVVTYNATIGACAKCSQWEKALELLAQMRAEGFAPDSRSYNLTIRALG
KGGQREEALEMLTSMEGEGVPPSIISYNAAIAACGEGGQWQRAIGLLPQM
RGANVIPNVVSYRAVITAFGKGGQWQRALDMLSEMEAQGVTPDVVSFNAV
ITACANCVQWEKGLDVLREIDAAGLEPNVVSYDTAMKACEDCGEGSTP*
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mRNA from alignment at H-paniculata_contig69222:112..711-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig69222.14857.1 ID=mRNA_H-paniculata_contig69222.14857.1|Name=mRNA_H-paniculata_contig69222.14857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=600bp|location=Sequence derived from alignment at H-paniculata_contig69222:112..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GTCATGCCTGATGTCGTGACCTACAATGCGACCATTGGAGCGTGCGCGAA
ATGCAGTCAGTGGGAGAAGGCGCTGGAGCTGTTGGCGCAGATGCGGGCAG
AGGGCTTTGCGCCGGACAGCAGGAGCTACAACTTGACAATTAGAGCATTA
GGCAAAGGTGGGCAGCGGGAGGAGGCTTTGGAGATGTTGACGAGCATGGA
AGGGGAAGGTGTTCCACCTAGCATCATTAGCTACAATGCAGCCATCGCAG
CGTGCGGAGAGGGTGGACAGTGGCAACGGGCGATTGGTCTCTTGCCGCAG
ATGCGAGGCGCAAACGTCATTCCTAACGTGGTGAGCTACAGGGCTGTTAT
CACAGCATTTGGGAAAGGCGGGCAGTGGCAACGCGCGTTGGATATGTTAT
CGGAGATGGAAGCACAGGGAGTCACGCCTGATGTCGTCAGCTTCAACGCC
GTCATTACAGCTTGCGCTAACTGTGTGCAATGGGAGAAGGGGCTAGACGT
ATTGCGGGAGATTGACGCTGCGGGCCTGGAGCCCAATGTCGTGAGCTATG
ACACGGCTATGAAGGCATGCGAGGACTGTGGTGAGGGGAGCACGCCGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig69222:112..711-

>mRNA_H-paniculata_contig69222.14857.1 ID=mRNA_H-paniculata_contig69222.14857.1|Name=mRNA_H-paniculata_contig69222.14857.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1194bp|location=Sequence derived from alignment at H-paniculata_contig69222:112..711- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCTGATGTCGTGACCTACAATGCGACCATTGGAGCGTGCGCGAAATG
CAGTCAGTGGGAGAAGGCGCTGGAGCTGTTGGCGCAGATGCGGGCAGAGG
GCTTTGCGCCGGACAGCAGGAGCTACAACTTGACAATTAGAGCATTAGGC
AAAGGTGGGCAGCGGGAGGAGGCTTTGGAGATGTTGACGAGCATGGAAGG
GGAAGGTGTTCCACCTAGCATCATTAGCTACAATGCAGCCATCGCAGCGT
GCGGAGAGGGTGGACAGTGGCAACGGGCGATTGGTCTCTTGCCGCAGATG
CGAGGCGCAAACGTCATTCCTAACGTGGTGAGCTACAGGGCTGTTATCAC
AGCATTTGGGAAAGGCGGGCAGTGGCAACGCGCGTTGGATATGTTATCGG
AGATGGAAGCACAGGGAGTCACGCCTGATGTCGTCAGCTTCAACGCCGTC
ATTACAGCTTGCGCTAACTGTGTGCAATGGGAGAAGGGGCTAGACGTATT
GCGGGAGATTGACGCTGCGGGCCTGGAGCCCAATGTCGTGAGCTATGACA
CGGCTATGAAGGCATGCGAGGACTGTGGTGAGGGGAGCACGCCGTAGATG
CCTGATGTCGTGACCTACAATGCGACCATTGGAGCGTGCGCGAAATGCAG
TCAGTGGGAGAAGGCGCTGGAGCTGTTGGCGCAGATGCGGGCAGAGGGCT
TTGCGCCGGACAGCAGGAGCTACAACTTGACAATTAGAGCATTAGGCAAA
GGTGGGCAGCGGGAGGAGGCTTTGGAGATGTTGACGAGCATGGAAGGGGA
AGGTGTTCCACCTAGCATCATTAGCTACAATGCAGCCATCGCAGCGTGCG
GAGAGGGTGGACAGTGGCAACGGGCGATTGGTCTCTTGCCGCAGATGCGA
GGCGCAAACGTCATTCCTAACGTGGTGAGCTACAGGGCTGTTATCACAGC
ATTTGGGAAAGGCGGGCAGTGGCAACGCGCGTTGGATATGTTATCGGAGA
TGGAAGCACAGGGAGTCACGCCTGATGTCGTCAGCTTCAACGCCGTCATT
ACAGCTTGCGCTAACTGTGTGCAATGGGAGAAGGGGCTAGACGTATTGCG
GGAGATTGACGCTGCGGGCCTGGAGCCCAATGTCGTGAGCTATGACACGG
CTATGAAGGCATGCGAGGACTGTGGTGAGGGGAGCACGCCGTAG
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