prot_H-paniculata_contig6751.14660.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6751.14660.1
Unique Nameprot_H-paniculata_contig6751.14660.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length211
Homology
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 300 bits (767), Expect = 5.760e-101
Identity = 157/212 (74.06%), Postives = 180/212 (84.91%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSA-KSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQL-NKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPYTG 210
            M+ ++A + A  ASASAF+ PA + R   S +SGM+M A KS+SLPFMP+PA LDGT+AGD GFDP+GFS+F+PLDFLREAELKHGRICQLAVVGFAATD+G RLPGA H V+S+AAHDAAV+TGAM QILLW+SAFE ISTVAV+QML+GSGR PGDFGFDP  L ++P    KKADMELKEI HCRLAM AF GMVTQAVLTNSGFPYTG
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRV-ASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 227 bits (578), Expect = 3.230e-72
Identity = 128/213 (60.09%), Postives = 153/213 (71.83%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAV-----VTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            MVK++A+ A    SA+AF AP+      V R+ V+ S    M+ KS S+PFMP+P  LDGT+ GD GFDP+GFS++V LDFLREAE+KHGRIC LAV G+ A D+GL LPG +H V S+ AHD AV  GAM+QILLW S FE ISTV VVQML+GSGR PG FGFDP   +K    A KA +EL EI + RLAMLAFSG+VTQA L N  FPY
Sbjct:    3 MVKALAV-AGLVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDA--ASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 211          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA)

HSP 1 Score: 218 bits (554), Expect = 1.200e-68
Identity = 115/208 (55.29%), Postives = 149/208 (71.63%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            M++ +ALAA     ASA +AP          S+ ++   +S ++PF+PRP  L G + GD GFDP+G SD+VP+++LRE+ELKHGR+C LAVVGF ATD+G RLPG MH V+S+ AHD AV  GAM QI +WI+  ECI  +A+++MLDGSGR PGDFGFDP Q+      A   +M+LKE+ + RLAMLAFSG+VTQAVLT  GFPY
Sbjct:    8 MMRCLALAAG----ASALMAPVXXXXXATQLSAEVSSVERSPAMPFLPRPQKLKG-MVGDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPLQIGG----ANDPEMQLKELENGRLAMLAFSGIVTQAVLTGKGFPY 206          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 214 bits (545), Expect = 3.500e-67
Identity = 114/192 (59.38%), Postives = 141/192 (73.44%), Query Frame = 0
Query:   20 APAVVTRAPV--SHSSGMTM-SAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            APAV  + PV  +H   M M +AKS ++PF+P+PA LDG+L GD GFDP+G SD++PLD+LRE+ELKHGRIC LAV GFAATD+G +LPG    V+S  AH+ AVS G M  +   I A ECIS +A+ + L GSGRA GD+G DP +L+   K  K ADM++KEI H RLAMLAFSGMVTQAVL + GFPY
Sbjct:   24 APAVAFQGPVRATHRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVSDWMPLDYLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSD--KPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: F0YEX6_AURAN (Putative plastid light harvesting protein isoform 51 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX6_AURAN)

HSP 1 Score: 207 bits (527), Expect = 1.160e-64
Identity = 111/209 (53.11%), Postives = 146/209 (69.86%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMT-MSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            M ++  L AA    ASA +AP       VS ++ +T M  KS S+PF+    NL G + G+ GFDP+G S +VP+D+LRE+ELKHGR+C LA +GF ATDMG  LPG MH+VSS+ AHD AV+ G+M QI ++I+  ECI  +A+++MLDGSGR PGDFGFDP Q+          +M+L+EI + RLAMLAF+G+VTQAVLT  GFPY
Sbjct:    1 MARTALLLAATATCASALVAP-------VSQTTSLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFVLPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGG----GDDPEMQLREIENGRLAMLAFAGIVTQAVLTGKGFPY 198          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: B8C0K3_THAPS (Fucoxanthin chl a/c light-harvesting protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0K3_THAPS)

HSP 1 Score: 205 bits (522), Expect = 7.570e-64
Identity = 123/212 (58.02%), Postives = 144/212 (67.92%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL-PGA--MHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKAD-MELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            M+K +A A A   S SAF AP+   RA  S      ++ KS SLPF+  P NLDG + GD GFDP  FSDFVP+DFLREAELKHGRIC +A +GF A DMG R+ P A     ++S+ AHDAAV  G M+Q+LLW S  E   T+AV QML+GSGRAPGDFG D   L   GK   + D M+LKEIVHCRLAM AFSG+VTQAVLT   FPY
Sbjct:    1 MMKIVA-ALALVGSTSAFTAPSTGARAVTS------LAEKSASLPFLEAPPNLDGGV-GDLGFDPFRFSDFVPIDFLREAELKHGRICMMAWLGFVAVDMGFRVYPAAEGFESLTSITAHDAAVEQGGMSQMLLWFSLLEVFDTIAVQQMLEGSGRAPGDFGLDGGFLK--GKSQAEIDTMKLKEIVHCRLAMFAFSGVVTQAVLTQGPFPY 202          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S3LGC8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGC8_9STRA)

HSP 1 Score: 205 bits (522), Expect = 1.300e-63
Identity = 120/215 (55.81%), Postives = 145/215 (67.44%), Query Frame = 0
Query:    1 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAK----SQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL---PGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            MVKS A+ A+  ASA+AF APA   RA           AK    S++LPF+  P N +G L G  GFDP  FSDFVP+ FL+EAE+KHGRIC +A VGFAA DMGLR+   P A   ++++ AHDA V  GAM Q+LLW S  E   T+AV+QML+GSGR PG+FGFDP    K     K+ADM+LKEI + RLAMLAF G+VTQAVLT  GFPY
Sbjct:    6 MVKS-AILASLIASAAAF-APAPTGRAATKVYEDAAAEAKPYVASKALPFLEAPPNCEG-LVGSAGFDPFRFSDFVPIQFLQEAEIKHGRICMMAFVGFAAVDMGLRVYPTPEAYEGLTAITAHDALVKEGAMGQLLLWFSIAEVFDTIAVIQMLNGSGRQPGEFGFDPLGFLKGASPEKEADMQLKEIKNGRLAMLAFGGLVTQAVLTQGGFPY 217          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A6U3P341_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P341_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.260e-63
Identity = 109/176 (61.93%), Postives = 127/176 (72.16%), Query Frame = 0
Query:   37 MSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLR---LPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQML-DGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            ++ KS +LPF+  P NL G + GD GFDP  FSDFVP+DFLREAELKHGRIC LA  GF A D+G R   LP A   ++SV AHDA V  GAM Q+ LW+S  E IS+VAV+QML +GSGR PGDFG DP    K   EA+  +MELKEI HCRLAM+AFSG+VTQAVLT   FPY
Sbjct:   30 LNEKSTALPFLEYPENLKGYV-GDVGFDPFRFSDFVPMDFLREAELKHGRICMLAWTGFVAVDLGFRIFPLPEAYEGLTSVTAHDALVKQGAMGQLFLWMSVAEVISSVAVMQMLNEGSGRKPGDFGLDPVGFLKGKSEAEIEEMELKEITHCRLAMMAFSGVVTQAVLTQGPFPY 204          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 202 bits (515), Expect = 8.440e-63
Identity = 113/197 (57.36%), Postives = 134/197 (68.02%), Query Frame = 0
Query:   13 ASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQML-DGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            ASASA +AP    ++ V+    M   A S++LPFM +P  LDGT AGD GFDP GF+    + +LREAE+KHGRIC LA  GF ATD+G  LPG MH+VSSV AHD A   GAM Q+ LW+S  E I +  V QM+  GS R PGD+G DP  L+      KKADM+LKEI HCRLAM AFSG+VTQAVLT  GFPY
Sbjct:   12 ASASALVAPVPAAKSAVA----MNYQA-SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDP--LDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPY 201          
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A1E7FEF2_9STRA (Fucoxanthin chlorophyll a/c protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEF2_9STRA)

HSP 1 Score: 203 bits (516), Expect = 1.160e-62
Identity = 108/171 (63.16%), Postives = 125/171 (73.10%), Query Frame = 0
Query:   41 SQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL---PGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 208
            S+SLPF+  P NL G  AGD GFDP  FSDFVP+DFLREAELKHGR+CQLAVVGFAA DMG R+   P A   ++SV AHDA V  GAM+Q+ LWI   E I +VA+ QML+GSGR PGDFGF  + L    +E +  DM+ KEI HCRLAM+AFSGMVT AVLT   FPY
Sbjct:   54 SESLPFLEYPPNLKG-YAGDVGFDPFRFSDFVPVDFLREAELKHGRMCQLAVVGFAAVDMGFRIYPFPEAYEGLTSVTAHDALVEQGAMSQLFLWIGLAEIIGSVALNQMLEGSGRLPGDFGFGSWMLEDMNEE-QVLDMKTKEITHCRLAMMAFSGMVTGAVLTQGPFPY 222          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWB9_ECTSI5.760e-10174.06Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A836CK85_9STRA3.230e-7260.09Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S3ZSN9_9STRA1.200e-6855.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2S869_9STRA3.500e-6759.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0YEX6_AURAN1.160e-6453.11Putative plastid light harvesting protein isoform ... [more]
B8C0K3_THAPS7.570e-6458.02Fucoxanthin chl a/c light-harvesting protein n=1 T... [more]
A0A7S3LGC8_9STRA1.300e-6355.81Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
A0A6U3P341_9STRA3.260e-6361.93Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0Y5A3_AURAN8.440e-6357.36Putative plastid light harvesting protein isoform ... [more]
A0A1E7FEF2_9STRA1.160e-6263.16Fucoxanthin chlorophyll a/c protein n=1 Tax=Fragil... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022796Chlorophyll A-B binding proteinPFAMPF00504Chloroa_b-bindcoord: 50..199
e-value: 3.5E-36
score: 125.2
IPR023329Chlorophyll a/b binding domain superfamilyGENE3D1.10.3460.10coord: 44..208
e-value: 8.3E-36
score: 125.5
IPR001344Chlorophyll A-B binding protein, plantPANTHERPTHR21649CHLOROPHYLL A/B BINDING PROTEINcoord: 15..209
NoneNo IPR availablePANTHERPTHR21649:SF7CHLOROPHYLL A-B BINDING PROTEIN 3, CHLOROPLASTICcoord: 15..209
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 4..14
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 27..210
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..26
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..3
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..17
score: 0.641
NoneNo IPR availableSUPERFAMILY103511Chlorophyll a-b binding proteincoord: 35..206
NoneNo IPR availableTMHMMTMhelixcoord: 7..29

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6751contigH-paniculata_contig6751:5069..9326 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6751.14660.1mRNA_H-paniculata_contig6751.14660.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6751 5063..9920 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6751.14660.1 ID=prot_H-paniculata_contig6751.14660.1|Name=mRNA_H-paniculata_contig6751.14660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRP
ANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDM
GLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDG
SGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAV
LTNSGFPYTG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022796Chloroa_b-bind
IPR023329Chlorophyll_a/b-bd_dom_sf
IPR001344Chloro_AB-bd_pln