mRNA_H-paniculata_contig6751.14660.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6751.14660.1
Unique NamemRNA_H-paniculata_contig6751.14660.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: D7FWB9_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWB9_ECTSI)

HSP 1 Score: 301 bits (770), Expect = 2.770e-98
Identity = 157/212 (74.06%), Postives = 180/212 (84.91%), Query Frame = 1 
Query:    7 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSA-KSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQL-NKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPYTG 636
            M+ ++A + A  ASASAF+ PA + R   S +SGM+M A KS+SLPFMP+PA LDGT+AGD GFDP+GFS+F+PLDFLREAELKHGRICQLAVVGFAATD+G RLPGA H V+S+AAHDAAV+TGAM QILLW+SAFE ISTVAV+QML+GSGR PGDFGFDP  L ++P    KKADMELKEI HCRLAM AF GMVTQAVLTNSGFPYTG
Sbjct:    1 MMNTLACSLAVLASASAFVPPAQLPRV-ASSNSGMSMQATKSKSLPFMPQPAKLDGTMAGDAGFDPLGFSNFIPLDFLREAELKHGRICQLAVVGFAATDLGFRLPGAEHAVASIAAHDAAVATGAMPQILLWVSAFEAISTVAVIQMLEGSGRIPGDFGFDPSNLYSRPELAKKKADMELKEITHCRLAMCAFGGMVTQAVLTNSGFPYTG 211
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A836CK85_9STRA (Light harvesting complex protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CK85_9STRA)

HSP 1 Score: 228 bits (580), Expect = 1.270e-69
Identity = 128/213 (60.09%), Postives = 153/213 (71.83%), Query Frame = 1 
Query:    7 MVKSIALAAAFCASASAFIAPAV-----VTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            MVK++A+A     SA+AF AP+      V R+ V+ S    M+ KS S+PFMP+P  LDGT+ GD GFDP+GFS++V LDFLREAE+KHGRIC LAV G+ A D+GL LPG +H V S+ AHD AV  GAM+QILLW S FE ISTV VVQML+GSGR PG FGFDP   +K    A KA +EL EI + RLAMLAFSG+VTQA L N  FPY
Sbjct:    3 MVKALAVAG-LVGSAAAFTAPSAFAGARVARSAVAPSQVTMMAGKSASIPFMPKPEKLDGTVPGDVGFDPLGFSNWVNLDFLREAEIKHGRICMLAVAGWVAVDLGLHLPGDVHNVGSLEAHDTAVKFGAMSQILLWTSIFEAISTVGVVQMLNGSGRQPGYFGFDPLNFSKDA--ASKAKLELNEIKNGRLAMLAFSGIVTQAALGND-FPY 211
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S3ZSN9_9STRA (Hypothetical protein n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S3ZSN9_9STRA)

HSP 1 Score: 219 bits (557), Expect = 3.050e-66
Identity = 115/208 (55.29%), Postives = 149/208 (71.63%), Query Frame = 1 
Query:    7 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            M++ +ALAA     ASA +AP          S+ ++   +S ++PF+PRP  L G + GD GFDP+G SD+VP+++LRE+ELKHGR+C LAVVGF ATD+G RLPG MH V+S+ AHD AV  GAM QI +WI+  ECI  +A+++MLDGSGR PGDFGFDP Q+      A   +M+LKE+ + RLAMLAFSG+VTQAVLT  GFPY
Sbjct:    8 MMRCLALAAG----ASALMAPVXXXXXATQLSAEVSSVERSPAMPFLPRPQKLKG-MVGDKGFDPLGLSDWVPVEWLRESELKHGRVCMLAVVGFVATDLGFRLPGEMHNVASINAHDMAVDMGAMTQIGIWIAVAECIGYLAILEMLDGSGRQPGDFGFDPLQIGG----ANDPEMQLKELENGRLAMLAFSGIVTQAVLTGKGFPY 206
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S2S869_9STRA (Hypothetical protein n=2 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2S869_9STRA)

HSP 1 Score: 215 bits (547), Expect = 1.200e-64
Identity = 114/192 (59.38%), Postives = 141/192 (73.44%), Query Frame = 1 
Query:   64 APAVVTRAPV--SHSSGMTM-SAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            APAV  + PV  +H   M M +AKS ++PF+P+PA LDG+L GD GFDP+G SD++PLD+LRE+ELKHGRIC LAV GFAATD+G +LPG    V+S  AH+ AVS G M  +   I A ECIS +A+ + L GSGRA GD+G DP +L+   K  K ADM++KEI H RLAMLAFSGMVTQAVL + GFPY
Sbjct:   24 APAVAFQGPVRATHRGAMKMMAAKSAAIPFLPKPAELDGSLIGDVGFDPLGVSDWMPLDYLRESELKHGRICMLAVTGFAATDLGFKLPGEQFNVASADAHNMAVSAGYMTVMGCAIFALECISGLAIQESLAGSGRAAGDYGLDPLKLSD--KPDKMADMQMKEITHARLAMLAFSGMVTQAVLFDKGFPY 213
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: F0YEX6_AURAN (Putative plastid light harvesting protein isoform 51 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YEX6_AURAN)

HSP 1 Score: 208 bits (530), Expect = 2.610e-62
Identity = 111/209 (53.11%), Postives = 146/209 (69.86%), Query Frame = 1 
Query:    7 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMT-MSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            M ++  L AA    ASA +AP       VS ++ +T M  KS S+PF+    NL G + G+ GFDP+G S +VP+D+LRE+ELKHGR+C LA +GF ATDMG  LPG MH+VSS+ AHD AV+ G+M QI ++I+  ECI  +A+++MLDGSGR PGDFGFDP Q+          +M+L+EI + RLAMLAF+G+VTQAVLT  GFPY
Sbjct:    1 MARTALLLAATATCASALVAP-------VSQTTSLTSMHEKSASMPFLEASPNLKGYIGGEKGFDPLGLSYWVPMDWLRESELKHGRVCMLATLGFVATDMGFVLPGEMHQVSSIGAHDVAVAQGSMTQITIFIAICECIGYLAILEMLDGSGRKPGDFGFDPLQIGG----GDDPEMQLREIENGRLAMLAFAGIVTQAVLTGKGFPY 198
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A7S3LGC8_9STRA (Hypothetical protein n=1 Tax=Amphora coffeiformis TaxID=265554 RepID=A0A7S3LGC8_9STRA)

HSP 1 Score: 208 bits (530), Expect = 5.110e-62
Identity = 121/216 (56.02%), Postives = 146/216 (67.59%), Query Frame = 1 
Query:    4 TMVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAK----SQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL---PGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            TMVKS A+ A+  ASA+AF APA   RA           AK    S++LPF+  P N +G L G  GFDP  FSDFVP+ FL+EAE+KHGRIC +A VGFAA DMGLR+   P A   ++++ AHDA V  GAM Q+LLW S  E   T+AV+QML+GSGR PG+FGFDP    K     K+ADM+LKEI + RLAMLAF G+VTQAVLT  GFPY
Sbjct:    5 TMVKS-AILASLIASAAAF-APAPTGRAATKVYEDAAAEAKPYVASKALPFLEAPPNCEG-LVGSAGFDPFRFSDFVPIQFLQEAEIKHGRICMMAFVGFAAVDMGLRVYPTPEAYEGLTAITAHDALVKEGAMGQLLLWFSIAEVFDTIAVIQMLNGSGRQPGEFGFDPLGFLKGASPEKEADMQLKEIKNGRLAMLAFGGLVTQAVLTQGGFPY 217
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: B8C0K3_THAPS (Fucoxanthin chl a/c light-harvesting protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C0K3_THAPS)

HSP 1 Score: 206 bits (525), Expect = 1.660e-61
Identity = 123/212 (58.02%), Postives = 144/212 (67.92%), Query Frame = 1 
Query:    7 MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL-PGA--MHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKAD-MELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            M+K +A A A   S SAF AP+   RA  S      ++ KS SLPF+  P NLDG + GD GFDP  FSDFVP+DFLREAELKHGRIC +A +GF A DMG R+ P A     ++S+ AHDAAV  G M+Q+LLW S  E   T+AV QML+GSGRAPGDFG D   L   GK   + D M+LKEIVHCRLAM AFSG+VTQAVLT   FPY
Sbjct:    1 MMKIVA-ALALVGSTSAFTAPSTGARAVTS------LAEKSASLPFLEAPPNLDGGV-GDLGFDPFRFSDFVPIDFLREAELKHGRICMMAWLGFVAVDMGFRVYPAAEGFESLTSITAHDAAVEQGGMSQMLLWFSLLEVFDTIAVQQMLEGSGRAPGDFGLDGGFLK--GKSQAEIDTMKLKEIVHCRLAMFAFSGVVTQAVLTQGPFPY 202
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BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A6U3P341_9STRA (Hypothetical protein n=2 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3P341_9STRA)

HSP 1 Score: 204 bits (520), Expect = 9.900e-61
Identity = 109/176 (61.93%), Postives = 127/176 (72.16%), Query Frame = 1 
Query:  115 MSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLR---LPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQML-DGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            ++ KS +LPF+  P NL G + GD GFDP  FSDFVP+DFLREAELKHGRIC LA  GF A D+G R   LP A   ++SV AHDA V  GAM Q+ LW+S  E IS+VAV+QML +GSGR PGDFG DP    K   EA+  +MELKEI HCRLAM+AFSG+VTQAVLT   FPY
Sbjct:   30 LNEKSTALPFLEYPENLKGYV-GDVGFDPFRFSDFVPMDFLREAELKHGRICMLAWTGFVAVDLGFRIFPLPEAYEGLTSVTAHDALVKQGAMGQLFLWMSVAEVISSVAVMQMLNEGSGRKPGDFGLDPVGFLKGKSEAEIEEMELKEITHCRLAMMAFSGVVTQAVLTQGPFPY 204
[Close]
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: F0Y5A3_AURAN (Putative plastid light harvesting protein isoform 33 n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y5A3_AURAN)

HSP 1 Score: 203 bits (517), Expect = 2.530e-60
Identity = 113/197 (57.36%), Postives = 134/197 (68.02%), Query Frame = 1 
Query:   43 ASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQML-DGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            ASASA +AP    ++ V+    M   A S++LPFM +P  LDGT AGD GFDP GF+    + +LREAE+KHGRIC LA  GF ATD+G  LPG MH+VSSV AHD A   GAM Q+ LW+S  E I +  V QM+  GS R PGD+G DP  L+      KKADM+LKEI HCRLAM AFSG+VTQAVLT  GFPY
Sbjct:   12 ASASALVAPVPAAKSAVA----MNYQA-SEALPFMEKPEALDGTYAGDVGFDPFGFTSIFDVKWLREAEIKHGRICMLAWTGFVATDLGFTLPGDMHQVSSVLAHDVACKYGAMQQLFLWLSFTEVILSAGVAQMMWMGSPREPGDYGLDP--LDFCSTPEKKADMKLKEITHCRLAMFAFSGVVTQAVLTGKGFPY 201
[Close]
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Match: A0A1E7FEF2_9STRA (Fucoxanthin chlorophyll a/c protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FEF2_9STRA)

HSP 1 Score: 204 bits (518), Expect = 3.490e-60
Identity = 108/171 (63.16%), Postives = 125/171 (73.10%), Query Frame = 1 
Query:  127 SQSLPFMPRPANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDMGLRL---PGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDGSGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAVLTNSGFPY 630
            S+SLPF+  P NL G  AGD GFDP  FSDFVP+DFLREAELKHGR+CQLAVVGFAA DMG R+   P A   ++SV AHDA V  GAM+Q+ LWI   E I +VA+ QML+GSGR PGDFGF  + L    +E +  DM+ KEI HCRLAM+AFSGMVT AVLT   FPY
Sbjct:   54 SESLPFLEYPPNLKG-YAGDVGFDPFRFSDFVPVDFLREAELKHGRMCQLAVVGFAAVDMGFRIYPFPEAYEGLTSVTAHDALVEQGAMSQLFLWIGLAEIIGSVALNQMLEGSGRLPGDFGFGSWMLEDMNEE-QVLDMKTKEITHCRLAMMAFSGMVTGAVLTQGPFPY 222
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6751.14660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWB9_ECTSI2.770e-9874.06Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A836CK85_9STRA1.270e-6960.09Light harvesting complex protein n=1 Tax=Tribonema... [more]
A0A7S3ZSN9_9STRA3.050e-6655.29Hypothetical protein n=2 Tax=Pelagomonas calceolat... [more]
A0A7S2S869_9STRA1.200e-6459.38Hypothetical protein n=2 Tax=Rhizochromulina marin... [more]
F0YEX6_AURAN2.610e-6253.11Putative plastid light harvesting protein isoform ... [more]
A0A7S3LGC8_9STRA5.110e-6256.02Hypothetical protein n=1 Tax=Amphora coffeiformis ... [more]
B8C0K3_THAPS1.660e-6158.02Fucoxanthin chl a/c light-harvesting protein n=1 T... [more]
A0A6U3P341_9STRA9.900e-6161.93Hypothetical protein n=2 Tax=Ditylum brightwellii ... [more]
F0Y5A3_AURAN2.530e-6057.36Putative plastid light harvesting protein isoform ... [more]
A0A1E7FEF2_9STRA3.490e-6063.16Fucoxanthin chlorophyll a/c protein n=1 Tax=Fragil... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6751contigH-paniculata_contig6751:5063..9920 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score210.3
Seed ortholog evalue8.7e-52
Seed eggNOG ortholog44056.XP_009038907.1
Preferred nameLHCA5
KEGG koko:K08907
KEGG Pathwayko00196,map00196
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BC5E@1,2S0ZD@2759
Ec32 ortholog descriptionLight harvesting complex protein
Ec32 orthologEc-25_003800.1
COG Functional cat.U
BiGG ReactioniRC1080.CRv4_Au5_s12_g3249_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons5
Model size1233
Cds size633
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930803.419404-UTR-H-paniculata_contig6751:5062..50681622930803.419404-UTR-H-paniculata_contig6751:5062..5068Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6751 5063..5068 +
1691481459.5396304-UTR-H-paniculata_contig6751:5062..50681691481459.5396304-UTR-H-paniculata_contig6751:5062..5068Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6751 5063..5068 +
1622930803.5279891-UTR-H-paniculata_contig6751:9326..99201622930803.5279891-UTR-H-paniculata_contig6751:9326..9920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6751 9327..9920 +
1691481459.610195-UTR-H-paniculata_contig6751:9326..99201691481459.610195-UTR-H-paniculata_contig6751:9326..9920Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig6751 9327..9920 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930803.4343755-CDS-H-paniculata_contig6751:5068..51701622930803.4343755-CDS-H-paniculata_contig6751:5068..5170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 5069..5170 +
1691481459.552284-CDS-H-paniculata_contig6751:5068..51701691481459.552284-CDS-H-paniculata_contig6751:5068..5170Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 5069..5170 +
1622930803.4574041-CDS-H-paniculata_contig6751:6130..62031622930803.4574041-CDS-H-paniculata_contig6751:6130..6203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 6131..6203 +
1691481459.5621655-CDS-H-paniculata_contig6751:6130..62031691481459.5621655-CDS-H-paniculata_contig6751:6130..6203Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 6131..6203 +
1622930803.4768844-CDS-H-paniculata_contig6751:7978..81331622930803.4768844-CDS-H-paniculata_contig6751:7978..8133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 7979..8133 +
1691481459.5723476-CDS-H-paniculata_contig6751:7978..81331691481459.5723476-CDS-H-paniculata_contig6751:7978..8133Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 7979..8133 +
1622930803.4920535-CDS-H-paniculata_contig6751:8403..85951622930803.4920535-CDS-H-paniculata_contig6751:8403..8595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 8404..8595 +
1691481459.5892098-CDS-H-paniculata_contig6751:8403..85951691481459.5892098-CDS-H-paniculata_contig6751:8403..8595Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 8404..8595 +
1622930803.5121388-CDS-H-paniculata_contig6751:9215..93261622930803.5121388-CDS-H-paniculata_contig6751:9215..9326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 9216..9326 +
1691481459.6017072-CDS-H-paniculata_contig6751:9215..93261691481459.6017072-CDS-H-paniculata_contig6751:9215..9326Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6751 9216..9326 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6751.14660.1prot_H-paniculata_contig6751.14660.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6751 5069..9326 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6751.14660.1

>prot_H-paniculata_contig6751.14660.1 ID=prot_H-paniculata_contig6751.14660.1|Name=mRNA_H-paniculata_contig6751.14660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=211bp
MVKSIALAAAFCASASAFIAPAVVTRAPVSHSSGMTMSAKSQSLPFMPRP
ANLDGTLAGDYGFDPVGFSDFVPLDFLREAELKHGRICQLAVVGFAATDM
GLRLPGAMHEVSSVAAHDAAVSTGAMAQILLWISAFECISTVAVVQMLDG
SGRAPGDFGFDPYQLNKPGKEAKKADMELKEIVHCRLAMLAFSGMVTQAV
LTNSGFPYTG*
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mRNA from alignment at H-paniculata_contig6751:5063..9920+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6751.14660.1 ID=mRNA_H-paniculata_contig6751.14660.1|Name=mRNA_H-paniculata_contig6751.14660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4858bp|location=Sequence derived from alignment at H-paniculata_contig6751:5063..9920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AGAACCATGGTGAAGTCTATCGCTCTCGCGGCTGCCTTTTGCGCTTCGGC
GTCCGCTTTCATCGCACCTGCCGTGGTCACGCGGGCGCCCGTCTCCCACA
GCAGCGGGGTAAGTCAAACTAGTCCTGTGCGTTTTTCAGCTCTGTCTTGC
TCTGGAAGAATGGGAGAGTAGCATGTGGAGTAGCTGGGGAGTTAGCTGTG
TGGCAATGGATAGAGCAGGAGAGCCTTGAACAGTCCTCTGGCCCATCGTG
TCAGTAGACGAGGAACTTTGGACTGGATGTATGCCACTTTCCCTTGAGCG
GTATTACACGAGCTATGTATGGGTTCGGTTGAGCATGACGTGTGTTTCTT
TTGTGCATGTAGGCGGCTCTCTGTTCGTCTTGATACAGGAGACCGATGAT
GGAACCTTGGAGCCTGCTCCAGTTCGCTCAGAATGTACTTGTAGGATTCG
ATTCTGCGGCAGAGTAGTTGTATACATCTATTCTTGTGACGTATTGCATG
TAAGAGAACCTGTGATTGGGAAGACGTGGGTCCCACCAGTTGGAACATGT
GTCGTTTCTGTCAAAAGCGTGGGAGAAGGGGATGCTGCTGTTGCTCTTAT
GTAGACGGACACAACTCTCCATGGGGGTTAAGCACATTGTCTGTACAGTG
AACTGGCACAGAATCTCCTTGTGTAGTGGGTTCAACTTTCCATGATATGT
CTTCCTCTTGGAGATACCACAGGTAATGTCGCCTCATGATTATTGATTGG
TTTTATATTAGTTCTCTCAGGGTGTAGTACTTGGGTCTTGGACATTACTT
ATGCGTGTGCGCTGTTCGCCGTTGTGATGCTGAGTGTGGTATCTTGGCCG
CGTTTACTTGGTAATTTTCCATCCCACTGGAATGGTAGCTGTAATTTCCT
TCGTCCTTTCTCGCCACCAGCAGCTATCCACGCCGCCCCCGTCTTGTACA
TGTATACTTGTAGTTCGTCACAGCTAAATATAACGAGTCCTACTTCACAA
GTGCTCAACCGTCCACTCTTTTGGCTTGCACGCTCTTGGCCGTTTGTGTC
ATCTATTGGTTGTTGCAGATGACAATGTCTGCGAAGTCTCAATCGCTGCC
CTTCATGCCACGGCCCGCGAACCTGGATGGCACTTTAGCTGGTGAGATTA
GCTGAGATAATTTTTCAGGGAAGGAAGTAGGGTCGATTTTCTTATCCTCC
AGTGTTGGTCATGTTGAAAATTGCCGAACACGATTCAATCCCTGCGATAT
TGGAGATTCCAAATAAACTCGTTTTCCCCTTATTCCGGCTTCAATGTCAA
AACTCTCGTGTGAACAGCGTGCGTAAAACGTTGTGAAAGGTTACGTGTCT
TTTAGCTTTCGTTTTAGCGGCACGGTTCATTGTCGGTAAACCAAACTTAA
TATGTGTTCATGACGTTCATGTGACTATTAGCGAAATGTCGTCTTACACG
AATTTTGAAGCTCTTGGGTCGAAAACATCAACAAACAGTCCACCGAGTCG
AGGTTGGAGAATGCTCAAATTTCTTGCAGCCCGAATCTCAATCCGCAGAT
GTTCATGCGCTGATAATTGCACCTCTTGCGCCTGCCGAACAAAGTTGTAT
ATAACTCACTGTTGGTATTTGGGCACGGTTTTATGAGCTCGTCCGCTGGC
GCCGAAGTACGGTGTATGGAGATGAAGAATCCAGAGTGTCGAGAAGTTAT
CTGGGACAATTACGCTCATGGATGAGAGACTTGTTCACGATTTCTTCCCC
GGTGGCCCTGAACTCACGAAGTCCATATTTATATTTAAATGGAATGATCG
TGAACATCGCATTTCTTGTTGGGGTCGTACGGGCCCTTCAAAGAGAAGAA
GCGCGCTCAACCGCTACATGGTACTCTTATGATCGTGCGAAGATTCATGG
CTCTAACTCATCTTCTGCACTAAATCTGAAATTCATAGCAATAGTAATGG
GAAACGCATTTTTGAGCGTGAGACCAGACGTTTCAACCGAAAGGATTGCG
TACCCGCAGTTTTCACTGGTACGGATCGCTCGGACCAGGCGTTACTAGCC
GTGAACGCGAATGATAATCCGTGAATAAACACGTTATTGGACCCGCTTCG
GTGACGAGCGAGATATTATACGTGTCTCAAGTGTAGTTTGCATGCGTGTA
ATAGGGGTGATTCATGAGTTATCCCCCCCCTCCCCCGACCACAAATTTGG
GACGTACGAATGTTTTGAGGCAAGAAGTCCCTGAGATGTCCCCACCTGTT
CGAAGAACATGACGTGATACCACATCTTGTATACATGTCCTCTTCCCGGC
CTATGCATGGATCCGTGTTTCGCGGAAACTAACTATCTATATGGGACGCG
AGTAACTCTTCGCGGGAAACACTCCTCCGAAAGATCAAGTCAGCACATGA
ATTTGAAAGCCGCTGAATAAGGTTAGGGTATAACCATCACTAACATGCTG
TTCTCGTAGATAAAACCTTGTTTGGTCAATATCACGAGGTTTGGTCGCCT
GGCACCCCTCGAATAACTCGAGCTTTGTCGTACCTTGGGGCGATCCGTGT
TGATGCCTCAACATTCGAGGGCGGACCAACCTTGTCATGAATGTGCGCAT
GCAGTATAGACCCAAATGCAAGGCGAAGAAAATGCAGACGTAGTCAGGGA
GAATTTTGAGGTTTTCACCTGCTACTAAGGATGACATGATGGTGCGCGAG
ATCTATCGCAGTGGCCTTGTTTGGAGCTACACGACACATGTCACATTATG
TTGTGCCCGAAAACAAGCTTGATGAACATGTATCTGTGAAGACTTGCGTG
ACGCGTCTATTCGGGAGTACTGTGATAGCCACGGCTCTGGCACTTGAATA
TACTTCCGTCTGTCTCACATCTGTCATGGCGTCGTGCGGACGGACACTTA
TCAATACTGACCGAAGGTGACTACGGCTTCGACCCTGTCGGATTCTCCGA
CTTCGTCCCCCTGGACTTCCTTCGAGAGGCCGAGCTCAAGCACGGCCGCA
TCTGTCAACTAGCGGTTGTGGGGTTCGCCGCGACTGACATGGGCCTTCGC
CTACCTGGGGCGATGCATGAGGTGAGCTTTGCGAATTGACCTGACTGCCC
CAGGTGGTCCTCTGCCAGGTAGTAGCGATTACACTTTTCGAGTAAAAAAT
CCACGTAGAAAACACACATGTCGCCGCGATAATGCCGGATTGTTCTGTAC
TGAAATCACCTACCATGAAGGCCAACAGCGTTGCGTATGTCAATATTGGA
ATAATGAAGGTTGCAGTACTGGTTTCAAAGACACCATGACTCTCGTTCCA
AGAGTAAGAATTGAGGTGCCCGCATCTCGACTCTTTGACAGGTTTCGTCC
GTCGCTGCGCACGATGCGGCGGTGTCAACGGGAGCCATGGCGCAGATCTT
GCTATGGATTTCCGCTTTCGAATGCATCTCGACAGTCGCTGTCGTTCAGA
TGCTTGACGGGTCTGGTCGCGCCCCTGGGGACTTTGGCTTCGACCCTTAC
CAGTTGAACAAGCCAGGGAAGGAGGCGAAGAAGGTGAACCAGGGAGATAT
CTTGATGTCTCACTCTTATAGGCGTTGATTTTTCGGGTGCCTCGGCTTGA
GTGATACAAGGCGAACAGATTGCTCCCACATTCGGAGGATAGCAGTCGCA
CTTTAGTCGTGCATCTGTTGTATGGTATGTGTGGGTGTACGGTAAAAGGC
ACCATGTACTTGCATGCACGTAAGCCATGCAATTTGTAGAATGTTGGTGT
ACGAGATTCATGAGATTCATCTATCTTGATCGAGGACAGTGCGTATTTGG
TGCGACAGTCCTGGGAGTTGTGCATTACAGGAAGGGGTCAGTACATGGCG
ATTGGCAATGCGTTGCGAAGGATAAGGTAACCCGCGCATGGTGATGGGGA
ACGGGATAAAATCAGAATCCGATTTAAACCCATCTGATTTTATTTCAGTT
TTAAAAAGTTCCGATATGTTTTACTGCAGGTCAGCTGTAAAGAGTCCGAG
TGAAGTGAGATGAAGGCGACGACCGAATCAACGTAACATCCCTAATTATG
AGCATTTTCCCCACTGCAAGGTCCACTGATTATTGGTTGTGTTGCGCATT
AGGTTGACGTCCACCCTTCGTACTGTTCCACCTTTTTGCCTGTTCCAAAC
CAGGCGGACATGGAGCTCAAGGAGATCGTACACTGCCGTCTGGCCATGTT
GGCGTTCTCCGGTATGGTAACCCAGGCCGTGCTCACCAACTCGGGCTTCC
CCTACACCGGCTAAATCGTTCATCTTCTGATGTAGCGATGACCGTTTTGG
AACGCTGGTACATCGTTTGACACAAACCCGTCTTGATCTCGAGCGGGAGG
ATACCAAGAGACAACGCGGACGCGATTTGGTTGCCACAATTTAGTTCCGT
GCAGCAGCCGGTTGGGGTTGGAATCCGGAGGTGTTGCGCTTGCGTATAAA
ACGTCTTCCCGGCTCGACCAGGAGTAGTTTTTCCCTGGATTTTGCTGTCT
CGCGAAATATGCTTTGCTTTTGGGAACTGAAGTACGGGAGATTTAACCAG
TTTCGGTAATTTGCGTTTATAGAAACGTGGGTTGAGAGGAAATGTCGTCG
AGCGTACTATGTTTTATTGATTGTTCCTGTTTTAGCGGATTGATATATTG
GAACAAAATGGTCGTAGGAAAGGTTTTGTTTATGTGCAAGTCATGGAGGA
GATTAACTTCACTAACACTGTCGCGCTATCATGCACAGGATGCGTAGCAG
TGACCAGGACGAAACAATGATGGGAACAGAAGTCGATCGAATCAATCCTT
TTTTTTTGTGAAAAATATATCGATGAAATAAAATTAAGAACCATCTTTTG
GAGAACAA
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Coding sequence (CDS) from alignment at H-paniculata_contig6751:5063..9920+

>mRNA_H-paniculata_contig6751.14660.1 ID=mRNA_H-paniculata_contig6751.14660.1|Name=mRNA_H-paniculata_contig6751.14660.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1266bp|location=Sequence derived from alignment at H-paniculata_contig6751:5063..9920+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGTGAAGTCTATCGCTCTCGCGGCTGCCTTTTGCGCTTCGGCGTCCGC
TTTCATCGCACCTGCCGTGGTCACGCGGGCGCCCGTCTCCCACAGCAGCG
GGATGGTGAAGTCTATCGCTCTCGCGGCTGCCTTTTGCGCTTCGGCGTCC
GCTTTCATCGCACCTGCCGTGGTCACGCGGGCGCCCGTCTCCCACAGCAG
CGGGATGACAATGTCTGCGAAGTCTCAATCGCTGCCCTTCATGCCACGGC
CCGCGAACCTGGATGGCACTTTAGCTGATGACAATGTCTGCGAAGTCTCA
ATCGCTGCCCTTCATGCCACGGCCCGCGAACCTGGATGGCACTTTAGCTG
GTGACTACGGCTTCGACCCTGTCGGATTCTCCGACTTCGTCCCCCTGGAC
TTCCTTCGAGAGGCCGAGCTCAAGCACGGCCGCATCTGTCAACTAGCGGT
TGTGGGGTTCGCCGCGACTGACATGGGCCTTCGCCTACCTGGGGCGATGC
ATGAGGTGACTACGGCTTCGACCCTGTCGGATTCTCCGACTTCGTCCCCC
TGGACTTCCTTCGAGAGGCCGAGCTCAAGCACGGCCGCATCTGTCAACTA
GCGGTTGTGGGGTTCGCCGCGACTGACATGGGCCTTCGCCTACCTGGGGC
GATGCATGAGGTTTCGTCCGTCGCTGCGCACGATGCGGCGGTGTCAACGG
GAGCCATGGCGCAGATCTTGCTATGGATTTCCGCTTTCGAATGCATCTCG
ACAGTCGCTGTCGTTCAGATGCTTGACGGGTCTGGTCGCGCCCCTGGGGA
CTTTGGCTTCGACCCTTACCAGTTGAACAAGCCAGGGAAGGAGGCGAAGA
AGGTTTCGTCCGTCGCTGCGCACGATGCGGCGGTGTCAACGGGAGCCATG
GCGCAGATCTTGCTATGGATTTCCGCTTTCGAATGCATCTCGACAGTCGC
TGTCGTTCAGATGCTTGACGGGTCTGGTCGCGCCCCTGGGGACTTTGGCT
TCGACCCTTACCAGTTGAACAAGCCAGGGAAGGAGGCGAAGAAGGCGGAC
ATGGAGCTCAAGGAGATCGTACACTGCCGTCTGGCCATGTTGGCGTTCTC
CGGTATGGTAACCCAGGCCGTGCTCACCAACTCGGGCTTCCCCTACACCG
GCTAAGCGGACATGGAGCTCAAGGAGATCGTACACTGCCGTCTGGCCATG
TTGGCGTTCTCCGGTATGGTAACCCAGGCCGTGCTCACCAACTCGGGCTT
CCCCTACACCGGCTAA
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