prot_H-paniculata_contig6691.14583.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6691.14583.1
Unique Nameprot_H-paniculata_contig6691.14583.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length80
Homology
BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: A0A6H5L023_9PHAE (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L023_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.120e-14
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 0
Query:    1 MENNQRGRAAGAA---GTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPK--HSSNQQTG 65
            M +  +G+AAGA+    + T KLGEA+VLNLVLDYLATKGF EAE+TLRQSV+AS GS K   +SNQQ+G
Sbjct:    1 MADTGKGKAAGASTGGSSATDKLGEAEVLNLVLDYLATKGFTEAEQTLRQSVTASGGSQKKGRNSNQQSG 70          
BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: A0A2P4YPY8_9STRA (Cystathionine beta-lyase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPY8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.910e-5
Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 0
Query:   10 AGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPKHSSNQQTGEVTVQPVDTHGASQL 80
            A ++    Q LGE++V +LV DYL T+ F EAERTLR    A+  SPK SS     +  V P D    S L
Sbjct:    2 ASSSAALQQSLGESEVFDLVCDYLRTRQFFEAERTLRSEREATH-SPKASSPVAANQQDVTPSDDAATSSL 71          
BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: H3GVQ9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVQ9_PHYRM)

HSP 1 Score: 47.0 bits (110), Expect = 7.360e-5
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 0
Query:   10 AGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPKHSSNQQTGEVTVQPVD 73
            A ++    Q LGE++V +LV DYL T+ F EAERTLR    A+ GSP+ SS     +  + PV+
Sbjct:    2 ASSSAALQQSLGESEVFDLVCDYLRTRQFFEAERTLRSEREAT-GSPRASSPVAANQQDMAPVE 64          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L023_9PHAE1.120e-1464.29LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2P4YPY8_9STRA2.910e-543.66Cystathionine beta-lyase (Fragment) n=1 Tax=Phytop... [more]
H3GVQ9_PHYRM7.360e-543.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006594LIS1 homology motifPROSITEPS50896LISHcoord: 21..53
score: 7.978

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6691contigH-paniculata_contig6691:1132..1371 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6691.14583.1mRNA_H-paniculata_contig6691.14583.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6691 1132..1371 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6691.14583.1 ID=prot_H-paniculata_contig6691.14583.1|Name=mRNA_H-paniculata_contig6691.14583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MENNQRGRAAGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVS
ASDGSPKHSSNQQTGEVTVQPVDTHGASQL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006594LisH