mRNA_H-paniculata_contig6691.14583.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig6691.14583.1
Unique NamemRNA_H-paniculata_contig6691.14583.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: A0A6H5L023_9PHAE (LisH domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L023_9PHAE)

HSP 1 Score: 77.0 bits (188), Expect = 1.120e-14
Identity = 45/70 (64.29%), Postives = 55/70 (78.57%), Query Frame = 1 
Query:    1 MENNQRGRAAGAA---GTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPK--HSSNQQTG 195
            M +  +G+AAGA+    + T KLGEA+VLNLVLDYLATKGF EAE+TLRQSV+AS GS K   +SNQQ+G
Sbjct:    1 MADTGKGKAAGASTGGSSATDKLGEAEVLNLVLDYLATKGFTEAEQTLRQSVTASGGSQKKGRNSNQQSG 70
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BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: A0A2P4YPY8_9STRA (Cystathionine beta-lyase (Fragment) n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YPY8_9STRA)

HSP 1 Score: 47.4 bits (111), Expect = 2.910e-5
Identity = 31/71 (43.66%), Postives = 39/71 (54.93%), Query Frame = 1 
Query:   28 AGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPKHSSNQQTGEVTVQPVDTHGASQL 240
            A ++    Q LGE++V +LV DYL T+ F EAERTLR    A+  SPK SS     +  V P D    S L
Sbjct:    2 ASSSAALQQSLGESEVFDLVCDYLRTRQFFEAERTLRSEREATH-SPKASSPVAANQQDVTPSDDAATSSL 71
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BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Match: H3GVQ9_PHYRM (Uncharacterized protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GVQ9_PHYRM)

HSP 1 Score: 47.0 bits (110), Expect = 7.360e-5
Identity = 28/64 (43.75%), Postives = 39/64 (60.94%), Query Frame = 1 
Query:   28 AGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVSASDGSPKHSSNQQTGEVTVQPVD 219
            A ++    Q LGE++V +LV DYL T+ F EAERTLR    A+ GSP+ SS     +  + PV+
Sbjct:    2 ASSSAALQQSLGESEVFDLVCDYLRTRQFFEAERTLRSEREAT-GSPRASSPVAANQQDMAPVE 64
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6691.14583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L023_9PHAE1.120e-1464.29LisH domain-containing protein n=2 Tax=Ectocarpus ... [more]
A0A2P4YPY8_9STRA2.910e-543.66Cystathionine beta-lyase (Fragment) n=1 Tax=Phytop... [more]
H3GVQ9_PHYRM7.360e-543.75Uncharacterized protein n=1 Tax=Phytophthora ramor... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6691contigH-paniculata_contig6691:1132..1371 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score84.3
Seed ortholog evalue2.7e-14
Seed eggNOG ortholog2880.D7FL39
Preferred nameCBL
KEGG rclassRC00056,RC00069,RC00382,RC00488,RC00710,RC01245,RC02303
KEGG koko:K01760
KEGG ReactionR00782,R01286,R02408,R04941
KEGG Pathwayko00270,ko00450,ko01100,ko01110,ko01230,map00270,map00450,map01100,map01110,map01230
KEGG ModuleM00017
Hectar predicted targeting categoryother localisation
GOsGO:0000096,GO:0000097,GO:0003674,GO:0003824,GO:0003962,GO:0004121,GO:0004123,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005777,GO:0006082,GO:0006520,GO:0006534,GO:0006555,GO:0006790,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009066,GO:0009067,GO:0009069,GO:0009070,GO:0009086,GO:0009092,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009987,GO:0016053,GO:0016740,GO:0016765,GO:0016829,GO:0016846,GO:0017144,GO:0019279,GO:0019343,GO:0019344,GO:0019346,GO:0019752,GO:0019842,GO:0030170,GO:0036094,GO:0042579,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044272,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048037,GO:0050662,GO:0050667,GO:0070279,GO:0071265,GO:0071266,GO:0071704,GO:0097159,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1901605,GO:1901607
EggNOG free text desc.cystathionine gamma-synthase activity
EggNOG OGsCOG0626@1,KOG0053@2759
EC4.4.1.8
COG Functional cat.E
BiGG ReactioniRC1080.CRv4_Au5_s16_g6444_t1
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Exons1
Model size240
Cds size240
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930792.1954224-CDS-H-paniculata_contig6691:1131..13711622930792.1954224-CDS-H-paniculata_contig6691:1131..1371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6691 1132..1371 +
1691481454.3112762-CDS-H-paniculata_contig6691:1131..13711691481454.3112762-CDS-H-paniculata_contig6691:1131..1371Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig6691 1132..1371 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6691.14583.1prot_H-paniculata_contig6691.14583.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig6691 1132..1371 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig6691.14583.1

>prot_H-paniculata_contig6691.14583.1 ID=prot_H-paniculata_contig6691.14583.1|Name=mRNA_H-paniculata_contig6691.14583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=80bp
MENNQRGRAAGAAGTTTQKLGEADVLNLVLDYLATKGFVEAERTLRQSVS
ASDGSPKHSSNQQTGEVTVQPVDTHGASQL
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mRNA from alignment at H-paniculata_contig6691:1132..1371+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig6691.14583.1 ID=mRNA_H-paniculata_contig6691.14583.1|Name=mRNA_H-paniculata_contig6691.14583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=240bp|location=Sequence derived from alignment at H-paniculata_contig6691:1132..1371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAACAACCAGAGAGGTAGAGCTGCAGGTGCCGCTGGCACTACCAC
ACAGAAGCTGGGCGAGGCGGATGTACTGAACCTCGTGTTGGACTACTTGG
CCACCAAGGGCTTTGTGGAGGCCGAGCGTACGCTACGTCAGTCTGTGAGC
GCTTCAGACGGTAGTCCCAAGCACAGCTCCAACCAACAAACAGGTGAGGT
CACGGTACAGCCTGTTGATACACACGGAGCTAGTCAGCTG
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Coding sequence (CDS) from alignment at H-paniculata_contig6691:1132..1371+

>mRNA_H-paniculata_contig6691.14583.1 ID=mRNA_H-paniculata_contig6691.14583.1|Name=mRNA_H-paniculata_contig6691.14583.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=480bp|location=Sequence derived from alignment at H-paniculata_contig6691:1132..1371+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGAACAACCAGAGAGGTAGAGCTGCAGGTGCCGCTGGCACTACCAC
ACAGAAGCTGGGCGAGGCGGATGTACTGAACCTCGTGTTGGACTACTTGG
CCACCAAGGGCTTTGTGGAGGCCGAGCGTACGCTACGTCAGTCTGTGAGC
GCTTCAGACGGTAGTCCCAAGCACAGCTCCAACCAACAAACAGGTGAGGT
CACGGTACAGCCTGTTGATACACACGGAGCTAGTCAGCTGATGGAGAACA
ACCAGAGAGGTAGAGCTGCAGGTGCCGCTGGCACTACCACACAGAAGCTG
GGCGAGGCGGATGTACTGAACCTCGTGTTGGACTACTTGGCCACCAAGGG
CTTTGTGGAGGCCGAGCGTACGCTACGTCAGTCTGTGAGCGCTTCAGACG
GTAGTCCCAAGCACAGCTCCAACCAACAAACAGGTGAGGTCACGGTACAG
CCTGTTGATACACACGGAGCTAGTCAGCTG
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