prot_H-paniculata_contig66174.14490.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig66174.14490.1
Unique Nameprot_H-paniculata_contig66174.14490.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length106
Homology
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 6.010e-24
Identity = 51/101 (50.50%), Postives = 66/101 (65.35%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGAREI 101
            +GH++  SL++L+ +DDNGVD+ G +  CD+CA+GKS Q  HP  A   V R FQ V TDLMGPI P A  GF+Y  K     T+W EI L+KTK  A +I
Sbjct:   44 LGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTKRDAIKI 143          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 2.800e-23
Identity = 46/98 (46.94%), Postives = 61/98 (62.24%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGA 98
            +GH++  SL++L+ V  NGV++ G +  CD+CAVG S Q  HP  A     R FQLV TDLMGP  P ALGGF Y  K  D++ +W E+ L+K K   
Sbjct:  273 VGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSAT 370          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5JYD3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYD3_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 3.160e-19
Identity = 45/91 (49.45%), Postives = 55/91 (60.44%), Query Frame = 0
Query:    3 HLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLK 93
            HLN  S+ LL+  +DNGVDF  ++  CDICA+ KS QLAHP   + +     QLV TD MG   P A GGF Y  K +D Y+   EI LLK
Sbjct:  317 HLNFRSMELLRKKEDNGVDFSDSMTPCDICAISKSRQLAHPEKTNRETTAPMQLVYTDNMGKTTPLAKGGFGYVSKFTDAYSWMKEIYLLK 407          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5JT61_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JT61_9PHAE)

HSP 1 Score: 89.7 bits (221), Expect = 1.090e-18
Identity = 44/95 (46.32%), Postives = 56/95 (58.95%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTK 95
            +GHLN  S+ LL+  ++N VDF  ++  CDICA+ KS QLAHP     +      LV TD+MG   P A GGF Y    +D Y+R  EI LLK K
Sbjct:  113 LGHLNFRSMKLLRKKEENEVDFSDSMTPCDICAISKSTQLAHPKKTSRETTAPMLLVYTDIMGKTTPLAKGGFGYVSMFNDAYSRIKEIYLLKAK 207          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5JWF9_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWF9_9PHAE)

HSP 1 Score: 79.7 bits (195), Expect = 3.410e-15
Identity = 39/79 (49.37%), Postives = 52/79 (65.82%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKI 79
            +G++N  SL +L+ +D+NGVD+ G +  C    VGKS Q  H   A   V R+FQL+ TDLMGPI P ALGGF+Y  K+
Sbjct:  252 LGYINSRSLGMLRKIDNNGVDYTGTMEACGN-DVGKSSQRPHLKKATYDVSRSFQLISTDLMGPISPPALGGFRYVSKL 329          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A5N6PWF0_9ASTR (Uncharacterized protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6PWF0_9ASTR)

HSP 1 Score: 67.8 bits (164), Expect = 5.520e-11
Identity = 38/102 (37.25%), Postives = 57/102 (55.88%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKT----VDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGA 98
            +GHLN  ++N +K+    + D     G  V  CD C +GK  + + P  +  +  + F+LV TDL GPI P  LGG +Y   + D+YTR+  +  L+TKD A
Sbjct:  466 LGHLNFRAINNMKSKNIVIGDLTTMQGEQV--CDACMLGKQARNSFPKKSLYRANKPFELVHTDLCGPISPPTLGGNRYFMLLVDDYTRYAWVYALRTKDEA 565          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A7D9J652_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9J652_PARCT)

HSP 1 Score: 67.0 bits (162), Expect = 6.490e-11
Identity = 35/106 (33.02%), Postives = 57/106 (53.77%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPD------CDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGARE 100
            +GHL  N++N  K +++N V     V +      C+ C  GK H+  +P TAD +    F+LV +D+ GP+   +LGG +Y     D+Y+R+T +  +K K    E
Sbjct:   61 LGHLGMNNVN--KLINENMVSGMDGVSNTNENQFCEACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFIDDYSRYTFVYFMKNKSEVLE 164          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A7D9KLW7_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9KLW7_PARCT)

HSP 1 Score: 61.2 bits (147), Expect = 2.070e-9
Identity = 31/105 (29.52%), Postives = 55/105 (52.38%), Query Frame = 0
Query:    2 GHLNRNSLNLLKTVDDNGV------DFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGARE 100
            GHL  NS++  K +++N        D G     C+ C +GK H+   P    ++    F+++ TD+ GP+  ++ G  KY     D+Y+++T++  LK+KD   E
Sbjct:   62 GHLGMNSIS--KLINENMAEGMNCSDHGKESSLCESCVMGKQHRTPFPKDTRHRASELFEIIHTDVCGPMHVKSFGKSKYFVTFIDDYSKYTQVYFLKSKDEVIE 164          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A7D9D6Q5_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9D6Q5_PARCT)

HSP 1 Score: 61.2 bits (147), Expect = 1.110e-8
Identity = 32/100 (32.00%), Postives = 53/100 (53.00%), Query Frame = 0
Query:    1 MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGARE 100
            +GHL  N++N  K +++N V         + C  GK H+  +P TAD +    F+LV +D+ GP+   +LGG +Y     D+Y+R+  +  +K K    E
Sbjct:  437 LGHLGMNNVN--KLINENMVSG-------EACIKGKHHRCPYPKTADYRASEPFELVHSDVCGPMSVPSLGGSRYYVSFIDDYSRYIFVYFMKNKSEVLE 527          
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A7D9L6G9_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 (Fragment) n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L6G9_PARCT)

HSP 1 Score: 60.8 bits (146), Expect = 1.480e-8
Identity = 31/101 (30.69%), Postives = 56/101 (55.45%), Query Frame = 0
Query:    2 GHLNRNSLN-LLKTVDDNGVDFGGAVP---DCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGA 98
            GHLN   +N L+K     G+ +  +     DC  C++GK H+   P  + ++  R ++++ TD+ GP+  E++GG +Y    +D+Y+R+     +K KD A
Sbjct:  419 GHLNNGYVNQLMKNDMVTGMMYDESKQVEKDCKGCSMGKMHKNPFPKASLHRASRPYEIIHTDICGPMQVESIGGSRYLVTFTDDYSRYAVAYFIKKKDEA 519          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KBU1_9PHAE6.010e-2450.50CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1J1_9PHAE2.800e-2346.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYD3_9PHAE3.160e-1949.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JT61_9PHAE1.090e-1846.32Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5JWF9_9PHAE3.410e-1549.37Integrase catalytic domain-containing protein n=1 ... [more]
A0A5N6PWF0_9ASTR5.520e-1137.25Uncharacterized protein n=1 Tax=Mikania micrantha ... [more]
A0A7D9J652_PARCT6.490e-1133.02Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9KLW7_PARCT2.070e-929.52Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9D6Q5_PARCT1.110e-832.00Retrovirus-related Pol poly from transposon TNT 1-... [more]
A0A7D9L6G9_PARCT1.480e-830.69Retrovirus-related Pol poly from transposon TNT 1-... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR036397Ribonuclease H superfamilyGENE3D3.30.420.10coord: 43..105
e-value: 5.6E-6
score: 27.7

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66174contigH-paniculata_contig66174:93..410 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66174.14490.1mRNA_H-paniculata_contig66174.14490.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig66174 78..410 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig66174.14490.1 ID=prot_H-paniculata_contig66174.14490.1|Name=mRNA_H-paniculata_contig66174.14490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQV
QRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGARE
INVMK*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036397RNaseH_sf