mRNA_H-paniculata_contig66174.14490.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig66174.14490.1
Unique NamemRNA_H-paniculata_contig66174.14490.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5JBV6_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JBV6_9PHAE)

HSP 1 Score: 116 bits (290), Expect = 6.600e-28
Identity = 55/100 (55.00%), Postives = 66/100 (66.00%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTK 300
            LWHRRMGH+N  SL++L+   +NGVD    V DC  CA+GKS Q  HP  A   V+R FQLV  D +GP  P ALGGFKYA K  D+ T+W EI L+K K
Sbjct:  528 LWHRRMGHINSKSLDILRKAPNNGVDHTEDVKDCGPCALGKSTQQPHPKEATYDVKRPFQLVFVDTLGPFTPTALGGFKYATKFVDQQTKWAEIGLMKDK 627
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KBU1_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBU1_9PHAE)

HSP 1 Score: 115 bits (288), Expect = 1.220e-27
Identity = 56/106 (52.83%), Postives = 71/106 (66.98%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGAREI 318
            LWHRR+GH++  SL++L+ +DDNGVD+ G +  CD+CA+GKS Q  HP  A   V R FQ V TDLMGPI P A  GF+Y  K     T+W EI L+KTK  A +I
Sbjct:   39 LWHRRLGHIDSRSLDVLRKIDDNGVDYTGPMETCDVCAIGKSSQRPHPKKATYDVSRHFQ-VSTDLMGPISPPARRGFRYVSKFVHGNTKWKEIFLIKTKRDAIKI 143
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5K1J1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1J1_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 4.230e-27
Identity = 51/103 (49.51%), Postives = 66/103 (64.08%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGA 309
            LWHRR+GH++  SL++L+ V  NGV++ G +  CD+CAVG S Q  HP  A     R FQLV TDLMGP  P ALGGF Y  K  D++ +W E+ L+K K   
Sbjct:  268 LWHRRVGHVHGRSLDILRKVQGNGVEYNGELSACDVCAVGNSKQQNHPKRASYDASRPFQLVTTDLMGPFSPPALGGFLYIKKFVDQHIKWNEVFLMKEKSAT 370
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KJN3_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJN3_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.100e-26
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTK 300
            LWHRRMGH+N  SL++L+    +G+D+ G V DC  C +GKS Q  HP  A   V   FQLV  D +GP  P ALGGFKYA K  D++T+W E+ L+K K
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KJH6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJH6_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.180e-26
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTK 300
            LWHRRMGH+N  SL++L+    +G+D+ G V DC  C +GKS Q  HP  A   V   FQLV  D +GP  P ALGGFKYA K  D++T+W E+ L+K K
Sbjct:  697 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 796
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5J842_9PHAE (Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J842_9PHAE)

HSP 1 Score: 110 bits (276), Expect = 5.190e-26
Identity = 51/100 (51.00%), Postives = 65/100 (65.00%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTK 300
            LWHRRMGH+N  SL++L+    +G+D+ G V DC  C +GKS Q  HP  A   V   FQLV  D +GP  P ALGGFKYA K  D++T+W E+ L+K K
Sbjct:  575 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKEVVLMKDK 674
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KXM1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXM1_9PHAE)

HSP 1 Score: 108 bits (269), Expect = 4.410e-25
Identity = 52/98 (53.06%), Postives = 63/98 (64.29%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLK 294
            LWHRRMGH+N  SL++L+    NGVD+ G V DC +C +GKS Q  HP      V R FQ V  D +GP  P ALGGFKYA K  D+ T+W EI L+K
Sbjct:  288 LWHRRMGHINGKSLDVLRKEPVNGVDYTGNVNDCCVCPLGKSAQQPHPKQVTYGVLRPFQHVSVDTLGPFTPTALGGFKYATKFVDQQTKWAEIVLMK 385
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BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5JYB5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JYB5_9PHAE)

HSP 1 Score: 105 bits (263), Expect = 2.900e-24
Identity = 49/103 (47.57%), Postives = 62/103 (60.19%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGA 309
            LWHRRMGH+N  SL++L+    +G+D+ G V DC  C +GKS Q  HP  A   V   FQLV  D  GP     LGGFKYA K  D++T+W E+ L+K K   
Sbjct:  480 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTFGPFTSTTLGGFKYATKFVDQHTKWKEVVLMKDKTSC 582
[Close]
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KNH5_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KNH5_9PHAE)

HSP 1 Score: 104 bits (260), Expect = 7.300e-24
Identity = 48/93 (51.61%), Postives = 60/93 (64.52%), Query Frame = 1 
Query:    1 LWHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTE 279
            LWHRRMGH+N  SL++L+    +G+D+ G V DC  C +GKS Q  HP  A   V   FQLV  D +GP  P ALGGFKYA K  D++T+W E
Sbjct:   46 LWHRRMGHINNKSLDVLRQQAASGIDYRGDVQDCSACPLGKSSQQPHPKHAVYGVSTPFQLVFVDTLGPFTPTALGGFKYATKFVDQHTKWKE 138
[Close]
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Match: A0A6H5KP59_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP59_9PHAE)

HSP 1 Score: 98.6 bits (244), Expect = 5.150e-22
Identity = 46/107 (42.99%), Postives = 64/107 (59.81%), Query Frame = 1 
Query:    4 WHRRMGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQVQRAFQLVMTDLMGPIIPEAL---GGFKYACKISDEYTRWTEIDLLKTKDGARE 315
            WHRR+GHLN  SL +L+     GVD+  ++  C +C +GK  Q  HP  +  ++ R  QLV+ D MGP+ P A    G F YACKI+D+YT+  E+ LL+ K    E
Sbjct:  309 WHRRLGHLNARSLEILRKDTGTGVDYRDSLSPCGVCQIGKHKQSPHPKQSTRELSRPGQLVVIDSMGPVNPPAYYKGGSFPYACKITDDYTKMKEVYLLRNKSDTTE 415
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig66174.14490.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JBV6_9PHAE6.600e-2855.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KBU1_9PHAE1.220e-2752.83CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K1J1_9PHAE4.230e-2749.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KJN3_9PHAE5.100e-2651.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KJH6_9PHAE5.180e-2651.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J842_9PHAE5.190e-2651.00Gag-Pol-p199 n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
A0A6H5KXM1_9PHAE4.410e-2553.06Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JYB5_9PHAE2.900e-2447.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KNH5_9PHAE7.300e-2451.61Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KP59_9PHAE5.150e-2242.99CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig66174contigH-paniculata_contig66174:78..410 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size333
Cds size318
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.2023032-UTR-H-paniculata_contig66174:77..921622930780.2023032-UTR-H-paniculata_contig66174:77..92Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig66174 78..92 +
1691481448.86744-UTR-H-paniculata_contig66174:77..921691481448.86744-UTR-H-paniculata_contig66174:77..92Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig66174 78..92 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930780.2246163-CDS-H-paniculata_contig66174:92..4101622930780.2246163-CDS-H-paniculata_contig66174:92..410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66174 93..410 +
1691481448.8755884-CDS-H-paniculata_contig66174:92..4101691481448.8755884-CDS-H-paniculata_contig66174:92..410Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig66174 93..410 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig66174.14490.1prot_H-paniculata_contig66174.14490.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig66174 93..410 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig66174.14490.1

>prot_H-paniculata_contig66174.14490.1 ID=prot_H-paniculata_contig66174.14490.1|Name=mRNA_H-paniculata_contig66174.14490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=106bp
MGHLNRNSLNLLKTVDDNGVDFGGAVPDCDICAVGKSHQLAHPNTADNQV
QRAFQLVMTDLMGPIIPEALGGFKYACKISDEYTRWTEIDLLKTKDGARE
INVMK*
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mRNA from alignment at H-paniculata_contig66174:78..410+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig66174.14490.1 ID=mRNA_H-paniculata_contig66174.14490.1|Name=mRNA_H-paniculata_contig66174.14490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=333bp|location=Sequence derived from alignment at H-paniculata_contig66174:78..410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CTTTGGCATCGGCGAATGGGACACTTGAATCGCAACAGTTTGAACCTCCT
CAAGACGGTCGATGACAACGGGGTGGACTTCGGTGGAGCCGTACCGGATT
GTGACATTTGTGCCGTTGGGAAAAGTCATCAACTGGCTCATCCGAATACA
GCCGACAACCAAGTGCAACGCGCCTTCCAGCTAGTCATGACAGATTTGAT
GGGACCGATCATACCGGAGGCGCTCGGGGGCTTCAAGTACGCTTGCAAAA
TTTCCGACGAGTACACGAGATGGACGGAGATTGACCTCCTGAAGACCAAG
GACGGAGCACGAGAGATTAATGTCATGAAGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig66174:78..410+

>mRNA_H-paniculata_contig66174.14490.1 ID=mRNA_H-paniculata_contig66174.14490.1|Name=mRNA_H-paniculata_contig66174.14490.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=636bp|location=Sequence derived from alignment at H-paniculata_contig66174:78..410+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGGACACTTGAATCGCAACAGTTTGAACCTCCTCAAGACGGTCGATGA
CAACGGGGTGGACTTCGGTGGAGCCGTACCGGATTGTGACATTTGTGCCG
TTGGGAAAAGTCATCAACTGGCTCATCCGAATACAGCCGACAACCAAGTG
CAACGCGCCTTCCAGCTAGTCATGACAGATTTGATGGGACCGATCATACC
GGAGGCGCTCGGGGGCTTCAAGTACGCTTGCAAAATTTCCGACGAGTACA
CGAGATGGACGGAGATTGACCTCCTGAAGACCAAGGACGGAGCACGAGAG
ATTAATGTCATGAAGTAGATGGGACACTTGAATCGCAACAGTTTGAACCT
CCTCAAGACGGTCGATGACAACGGGGTGGACTTCGGTGGAGCCGTACCGG
ATTGTGACATTTGTGCCGTTGGGAAAAGTCATCAACTGGCTCATCCGAAT
ACAGCCGACAACCAAGTGCAACGCGCCTTCCAGCTAGTCATGACAGATTT
GATGGGACCGATCATACCGGAGGCGCTCGGGGGCTTCAAGTACGCTTGCA
AAATTTCCGACGAGTACACGAGATGGACGGAGATTGACCTCCTGAAGACC
AAGGACGGAGCACGAGAGATTAATGTCATGAAGTAG
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