prot_H-paniculata_contig6471.14298.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig6471.14298.1
Unique Nameprot_H-paniculata_contig6471.14298.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length418
Homology
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE)

HSP 1 Score: 261 bits (667), Expect = 8.510e-74
Identity = 195/458 (42.58%), Postives = 241/458 (52.62%), Query Frame = 0
Query:    1 MKTQGQEIGVTYWESPERKCLNECRLPLPELPTEAINAVGYANGGAXXXXXXXXXXXXXXXAAERWKDSYGRE---------LGPGWVESPGAWKEPRHCHSGGLIVWKTGVARYRAKGAGDFQEHCCAALLGSRNVPVGAEAMLLDGFFHGTGILQNNAVYRAYKRRGWVKQLFDRGDMLPALPTQTTLPPSGHRFLVG----LQVGHVPRRKESIYVCAAAPAAIMEAPRSTPGLCAGEASAAPTPSIQIRFPITCCPMSSFVFVMNPY----DVHTXXXXXXXXXXXXTRAPRPTGA-HLPSPPPTGVPMDVAGGGEEDA---------KPYHPHFWTCIVCQKGGSMSKNISENTLGNGPGS---GRGP---GSLLLCSTCPASFHLSCLRPRMRTMPDG-------HWSCAYCYATGRAKGGDSDGACGAVRLMESLRQGMHGAVRVSVVLSL 418
            MK QG+EIGV++WESPERKCLNEC LPLP  P+             XXXXXXXXXXXXXXX   + K   G++         + P W + PG W EPRHCH   L+VW TG +R R +  G+F +HC AA+LGS + P GAE ML+DGF HGTG+L+ +AV++ Y+RR W  QL     +    P +  LPP     L      LQVG VPR ++SIYVC++     +EA   T     G   +              C          P+    D  T            T A     A H P                            +   PHF  CIVCQ+ G+ S  ++ +     P S    RGP   G LLLCSTCPA+FHLSCLRPR+R MP+G        WSCAYC+A GR  GGD+DGACGAVRLMESLRQGMHGAVRV+ + +L
Sbjct: 1329 MKEQGREIGVSFWESPERKCLNECTLPLP--PSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGCGKQGLQKQHAGGVVPVWPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDGFLHGTGVLEKHAVFQRYRRRPW-PQLSPEDAVRLQGPAK--LPPGATTRLQWKKKFLQVGKVPRSQQSIYVCSSREG--LEAVTMTSANTRGNDGSTAGXXXXXXXXXXVC-QDGAAMGTAPWTAALDSSTNEDRKTSTPEIPTTATAAANATHAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQGPHFRACIVCQRPGTDSNGVAVDEPA--PPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTSEGGSAKWSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRVNALRTL 1776          
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI)

HSP 1 Score: 241 bits (616), Expect = 4.440e-71
Identity = 182/444 (40.99%), Postives = 222/444 (50.00%), Query Frame = 0
Query:    1 MKTQGQEIGVTYWESPERKCLNECRLPLP-----ELPTE--AINAVGYANGGAXXXXXXXXXXXXXXXAAERWKDSYGRELGPGWVESPGAWKEPRHCHSGGLIVWKTGVARYRAKGAGDFQEHCCAALLGSRNVPVGAEAMLLDGFFHGTGILQNNAVYRAYKRRGWVKQLFDRGDMLPALPTQTTLPPSGHRFLV----GLQVGHVPRRKESIYVCAAAPAAIMEAPRSTPGLCAGEASAAPTPSIQIRFPITCCPMSSFVFVMNPYDVHTXXXXXXXXXXXXTRAPRPTGAHLPSPPPTGVPMDVAGGGEEDAKPYHPHFWTCIVCQKGGSMSKNISENTLGNGPG-----SGRGP---GSLLLCSTCPASFHLSCLRPRMRTMPDG-------HWSCAYCYATGRAKGGDSDGACGAVRLMESLRQGMHGAVRVSVVLSL 418
            MK QG+EIGV++WESPERKCLNEC LPLP     +L  E  A           XXXXXXX          +  +  +   + P W + PG W EPRHCH+  L+VW TG +R R +  G+F +HC AA+LGS + P GAE ML+DGF HGTG+L+ +AV++ Y+RR W +      +  P L     LPP     L     G  VG  P      +  A       E   STP +                                P     XXXXXXXXXXXX                                   PHF  CIVCQ+ G+ S   + +    GP        RGP   G LLLCSTCPA+FHLSCLRPR+R MP+G        WSCAYC+A GR  GGD+DGACGAVRLMESLRQGMHG VRV+ + +L
Sbjct:  134 MKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKGRVGCGKQGLQKQHPGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDGFLHGTGVLEKHAVFQRYRRRPWAQL---SPEDAPGLQGPAKLPPGATTRLQWKKDGAAVGTAP------WTAALDSTTNEERKTSTPEI--------------------------------PXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXXXQGPHFRACIVCQRPGTDSNGAAVD----GPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTGEGGSAKWSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRVNAMRTL 512          
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: K0SZ98_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZ98_THAOC)

HSP 1 Score: 63.2 bits (152), Expect = 6.850e-7
Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 0
Query:  317 VCQKGGSMSKNISENTLGNGPGSGRGPGSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYATG 382
            + Q G +    IS N L    G G   G LL CSTC   FHL C RP++ T+P+  WSCAYC A+G
Sbjct: 1749 LSQGGNASDDEISHNDLCETCGLG---GDLLCCSTCNLVFHLECTRPKLATIPENDWSCAYCIASG 1811          
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: R7TAQ5_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TAQ5_CAPTE)

HSP 1 Score: 61.2 bits (147), Expect = 2.490e-6
Identity = 34/97 (35.05%), Postives = 42/97 (43.30%), Query Frame = 0
Query:  293 VPMDVAGGGEEDAKPYHPHFWTCIVCQKGGSMSKNISENTLGNGPGSGRGPGSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYATGRAKGGDS 389
            +P    GGG  +      HFW C VC+ GG                       L+LC TCP SFH SC+   +  +PDG WSC  C   G  + GDS
Sbjct:  441 IPERKEGGGSGNES---DHFWYCEVCKDGGD----------------------LMLCDTCPKSFHQSCIN--LNEIPDGDWSCPICTGEGLPEDGDS 510          
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: A0A8J5XJN0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJN0_DIALT)

HSP 1 Score: 60.1 bits (144), Expect = 6.570e-6
Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 0
Query:  344 GSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYA 380
            G LLLC  CP  FHL+CLRP++R +P G WSCA+C A
Sbjct: 2289 GELLLCDDCPRGFHLACLRPQLRAVPAGRWSCAHCTA 2325          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5KX53_9PHAE8.510e-7442.58PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
D8LS03_ECTSI4.440e-7140.99PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
K0SZ98_THAOC6.850e-746.97Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
R7TAQ5_CAPTE2.490e-635.05Uncharacterized protein (Fragment) n=1 Tax=Capitel... [more]
A0A8J5XJN0_DIALT6.570e-662.16Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001965Zinc finger, PHD-typeSMARTSM00249PHD_3coord: 314..379
e-value: 1.8E-11
score: 54.1
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 296..389
e-value: 2.1E-13
score: 52.3
IPR019787Zinc finger, PHD-fingerPFAMPF00628PHDcoord: 343..379
e-value: 2.0E-7
score: 30.8
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 312..381
score: 9.187
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 315..378
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 304..380

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig6471contigH-paniculata_contig6471:405..12172 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig6471.14298.1mRNA_H-paniculata_contig6471.14298.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig6471 387..12172 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig6471.14298.1 ID=prot_H-paniculata_contig6471.14298.1|Name=mRNA_H-paniculata_contig6471.14298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp
MKTQGQEIGVTYWESPERKCLNECRLPLPELPTEAINAVGYANGGAAGGG
GSGNAGAAAGAAAERWKDSYGRELGPGWVESPGAWKEPRHCHSGGLIVWK
TGVARYRAKGAGDFQEHCCAALLGSRNVPVGAEAMLLDGFFHGTGILQNN
AVYRAYKRRGWVKQLFDRGDMLPALPTQTTLPPSGHRFLVGLQVGHVPRR
KESIYVCAAAPAAIMEAPRSTPGLCAGEASAAPTPSIQIRFPITCCPMSS
FVFVMNPYDVHTHTHTHTHTHTPTTRAPRPTGAHLPSPPPTGVPMDVAGG
GEEDAKPYHPHFWTCIVCQKGGSMSKNISENTLGNGPGSGRGPGSLLLCS
TCPASFHLSCLRPRMRTMPDGHWSCAYCYATGRAKGGDSDGACGAVRLME
SLRQGMHGAVRVSVVLSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR001965Znf_PHD
IPR013083Znf_RING/FYVE/PHD
IPR019787Znf_PHD-finger
IPR019786Zinc_finger_PHD-type_CS
IPR011011Znf_FYVE_PHD