mRNA_H-paniculata_contig6471.14298.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: A0A6H5KX53_9PHAE (PHD-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KX53_9PHAE) HSP 1 Score: 263 bits (672), Expect = 2.220e-74 Identity = 197/462 (42.64%), Postives = 243/462 (52.60%), Query Frame = 1
Query: 7 LLALMKTQGQEIGVTYWESPERKCLNECRLPLPELPTEAINAVGYANGGAXXXXXXXXXXXXXXXAAERWKDSYGRE---------LGPGWVESPGAWKEPRHCHSGGLIVWKTGVARYRAKGAGDFQEHCCAALLGSRNVPVGAEAMLLDGFFHGTGILQNNAVYRAYKRRGWVKQLFDRGDMLPALPTQTTLPPSGHRFLVG----LQVGHVPRRKESIYVCAAAPAAIMEAPRSTPGLCAGEASAAPTPSIQIRFPITCCPMSSFVFVMNPY----DVHTXXXXXXXXXXXXTRAPRPTGA-HLPSPPPTGVPMDVAGGGEEDA---------KPYHPHFWTCIVCQKGGSMSKNISENTLGNGPGS---GRGP---GSLLLCSTCPASFHLSCLRPRMRTMPDG-------HWSCAYCYATGRAKGGDSDGACGAVRLMESLRQGMHGAVRVSVVLSL 1272
LL MK QG+EIGV++WESPERKCLNEC LPLP P+ XXXXXXXXXXXXXXX + K G++ + P W + PG W EPRHCH L+VW TG +R R + G+F +HC AA+LGS + P GAE ML+DGF HGTG+L+ +AV++ Y+RR W QL + P + LPP L LQVG VPR ++SIYVC++ +EA T G + C P+ D T T A A H P + PHF CIVCQ+ G+ S ++ + P S RGP G LLLCSTCPA+FHLSCLRPR+R MP+G WSCAYC+A GR GGD+DGACGAVRLMESLRQGMHGAVRV+ + +L
Sbjct: 1325 LLKSMKEQGREIGVSFWESPERKCLNECTLPLP--PSVLARLADEDAAXXXXXXXXXXXXXXXXXXVTKGKVGCGKQGLQKQHAGGVVPVWPKIPGGWAEPRHCHIAPLVVWATGPSRARVRAKGEFMDHCSAAMLGSSHFPRGAELMLVDGFLHGTGVLEKHAVFQRYRRRPW-PQLSPEDAVRLQGPAK--LPPGATTRLQWKKKFLQVGKVPRSQQSIYVCSSREG--LEAVTMTSANTRGNDGSTAGXXXXXXXXXXVC-QDGAAMGTAPWTAALDSSTNEDRKTSTPEIPTTATAAANATHAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXQQQGPHFRACIVCQRPGTDSNGVAVDEPA--PPSLLQTRGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTSEGGSAKWSCAYCHAMGRVIGGDADGACGAVRLMESLRQGMHGAVRVNALRTL 1776
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: D8LS03_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LS03_ECTSI) HSP 1 Score: 244 bits (622), Expect = 6.910e-72 Identity = 184/450 (40.89%), Postives = 225/450 (50.00%), Query Frame = 1
Query: 1 ISLLALMKTQGQEIGVTYWESPERKCLNECRLPLP-----ELPTE--AINAVGYANGGAXXXXXXXXXXXXXXXAAERWKDSYGRELGPGWVESPGAWKEPRHCHSGGLIVWKTGVARYRAKGAGDFQEHCCAALLGSRNVPVGAEAMLLDGFFHGTGILQNNAVYRAYKRRGWVKQLFDRGDMLPALPTQTTLPPSGHRFLV----GLQVGHVPRRKESIYVCAAAPAAIMEAPRSTPGLCAGEASAAPTPSIQIRFPITCCPMSSFVFVMNPYDVHTXXXXXXXXXXXXTRAPRPTGAHLPSPPPTGVPMDVAGGGEEDAKPYHPHFWTCIVCQKGGSMSKNISENTLGNGPG-----SGRGP---GSLLLCSTCPASFHLSCLRPRMRTMPDG-------HWSCAYCYATGRAKGGDSDGACGAVRLMESLRQGMHGAVRVSVVLSL 1272
+ LL MK QG+EIGV++WESPERKCLNEC LPLP +L E A XXXXXXX + + + + P W + PG W EPRHCH+ L+VW TG +R R + G+F +HC AA+LGS + P GAE ML+DGF HGTG+L+ +AV++ Y+RR W + + P L LPP L G VG P + A E STP + P XXXXXXXXXXXX PHF CIVCQ+ G+ S + + GP RGP G LLLCSTCPA+FHLSCLRPR+R MP+G WSCAYC+A GR GGD+DGACGAVRLMESLRQGMHG VRV+ + +L
Sbjct: 128 LRLLKSMKEQGREIGVSFWESPERKCLNECTLPLPPSVLAQLAEEDAAAXXXXXXXXXXXXXXXXXLTKGRVGCGKQGLQKQHPGGVVPVWPKIPGGWAEPRHCHTAPLVVWATGPSRARVRAKGEFVDHCSAAMLGSSHFPPGAELMLMDGFLHGTGVLEKHAVFQRYRRRPWAQL---SPEDAPGLQGPAKLPPGATTRLQWKKDGAAVGTAP------WTAALDSTTNEERKTSTPEI--------------------------------PXXXXXXXXXXXXXXXXX--------------------XXXXXXXXXXXXXQGPHFRACIVCQRPGTDSNGAAVD----GPAPPCLPQARGPAAAGPLLLCSTCPAAFHLSCLRPRLRKMPEGTGEGGSAKWSCAYCHAMGRVVGGDADGACGAVRLMESLRQGMHGTVRVNAMRTL 512
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: K0SZ98_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SZ98_THAOC) HSP 1 Score: 63.2 bits (152), Expect = 7.100e-7 Identity = 31/66 (46.97%), Postives = 38/66 (57.58%), Query Frame = 1
Query: 967 VCQKGGSMSKNISENTLGNGPGSGRGPGSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYATG 1164
+ Q G + IS N L G G G LL CSTC FHL C RP++ T+P+ WSCAYC A+G
Sbjct: 1749 LSQGGNASDDEISHNDLCETCGLG---GDLLCCSTCNLVFHLECTRPKLATIPENDWSCAYCIASG 1811
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: R7TAQ5_CAPTE (Uncharacterized protein (Fragment) n=1 Tax=Capitella teleta TaxID=283909 RepID=R7TAQ5_CAPTE) HSP 1 Score: 61.2 bits (147), Expect = 2.570e-6 Identity = 34/97 (35.05%), Postives = 42/97 (43.30%), Query Frame = 1
Query: 895 VPMDVAGGGEEDAKPYHPHFWTCIVCQKGGSMSKNISENTLGNGPGSGRGPGSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYATGRAKGGDS 1185
+P GGG + HFW C VC+ GG L+LC TCP SFH SC+ + +PDG WSC C G + GDS
Sbjct: 441 IPERKEGGGSGNES---DHFWYCEVCKDGGD----------------------LMLCDTCPKSFHQSCIN--LNEIPDGDWSCPICTGEGLPEDGDS 510
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Match: A0A8J5XJN0_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XJN0_DIALT) HSP 1 Score: 60.1 bits (144), Expect = 6.790e-6 Identity = 23/37 (62.16%), Postives = 28/37 (75.68%), Query Frame = 1
Query: 1048 GSLLLCSTCPASFHLSCLRPRMRTMPDGHWSCAYCYA 1158
G LLLC CP FHL+CLRP++R +P G WSCA+C A
Sbjct: 2289 GELLLCDDCPRGFHLACLRPQLRAVPAGRWSCAHCTA 2325 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig6471.14298.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 5
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig6471.14298.1 >prot_H-paniculata_contig6471.14298.1 ID=prot_H-paniculata_contig6471.14298.1|Name=mRNA_H-paniculata_contig6471.14298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=418bp MKTQGQEIGVTYWESPERKCLNECRLPLPELPTEAINAVGYANGGAAGGGback to top mRNA from alignment at H-paniculata_contig6471:387..12172+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig6471.14298.1 ID=mRNA_H-paniculata_contig6471.14298.1|Name=mRNA_H-paniculata_contig6471.14298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=11786bp|location=Sequence derived from alignment at H-paniculata_contig6471:387..12172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig6471:387..12172+ >mRNA_H-paniculata_contig6471.14298.1 ID=mRNA_H-paniculata_contig6471.14298.1|Name=mRNA_H-paniculata_contig6471.14298.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2508bp|location=Sequence derived from alignment at H-paniculata_contig6471:387..12172+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |