prot_H-paniculata_contig63594.14159.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig63594.14159.1
Unique Nameprot_H-paniculata_contig63594.14159.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length100
Homology
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.520e-56
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVP+SIALNLTVPELVTAFNVEEMA+LVARGPLEHPGARYIVRHDGVRVDLR+VRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
Sbjct:  403 QVGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 502
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.520e-56
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVP+SIALNLTVPELVTAFNVEEMA+LVARGPLEHPGARYIVRHDGVRVDLR+VRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
Sbjct:  399 QVGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 498
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A7S0T970_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T970_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.160e-42
Identity = 71/100 (71.00%), Postives = 88/100 (88.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRS+A+NLTVPE VTAFN+ E+++LVA GP  HPGA++I+R DG R+DLRYV+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  360 QVGVPRSVAMNLTVPERVTAFNIHELSQLVANGPTTHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 459
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 157 bits (396), Expect = 2.160e-42
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRSIA+NLTVPE VT FN+  M +L+A GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKV 499
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 157 bits (396), Expect = 2.160e-42
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRSIA+NLTVPE VT FN+  M +L+A GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKV 499
[Close]
BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.950e-42
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRSIALNLTVPE+VT FN E +  L+ +GP EHPGA++I+R DGVRVDLRYVRNK  L L  G+ VERHL DDD IIFNRQPSLHKMSIMGHRVKV
Sbjct:  394 QVGVPRSIALNLTVPEMVTTFNQERLLALINKGPYEHPGAKFIIRQDGVRVDLRYVRNKADLALVPGWTVERHLADDDYIIFNRQPSLHKMSIMGHRVKV 493
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: K3WV53_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV53_GLOUD)

HSP 1 Score: 155 bits (392), Expect = 7.450e-42
Identity = 70/100 (70.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRSIA+NLTVPE VT FN+  M +L++ GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  385 QVGVPRSIAMNLTVPERVTPFNMAYMHQLISNGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMAHRVKV 484
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A1E7FK73_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK73_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.480e-42
Identity = 69/100 (69.00%), Postives = 89/100 (89.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRS+A+NLTVP+ VTAFN++E+++LV+ GP  HPGA++I+R DG R+DLRYV+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  362 QVGVPRSVAMNLTVPDRVTAFNMQELSQLVSNGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWVVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 461
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A448Z889_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z889_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.020e-41
Identity = 70/100 (70.00%), Postives = 88/100 (88.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRS+A+NLTVP+ VTAFN+ E+++LVA GP  HPGA++I+R+DG R+DLRYV+NK+ L L  G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  361 QVGVPRSVAMNLTVPDRVTAFNITELSQLVANGPTTHPGAKHIIRNDGTRIDLRYVKNKSELLLAPGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 460
[Close]
BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.390e-41
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 0 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 100
            +VGVPRSIA+NLTVPE VT FN+  M EL++RGPLEHPGA+YI+R DG R+DLRY+++K+ L L+ G+ VERHLRDDD ++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMVLMHELISRGPLEHPGAKYIIREDGNRIDLRYIKSKSELALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKV 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.520e-5696.00DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.520e-5696.00DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A7S0T970_9STRA1.160e-4271.00DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
H3GA78_PHYRM2.160e-4271.00DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A0W8DAF9_PHYNI2.160e-4271.00DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
A0A836CHC4_9STRA2.950e-4275.00DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
K3WV53_GLOUD7.450e-4270.00DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A1E7FK73_9STRA7.480e-4269.00DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z889_9STRA1.020e-4170.00DNA-directed RNA polymerase subunit n=2 Tax=Pseudo... [more]
A0A024UAL5_9STRA1.390e-4171.00DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006592RNA polymerase, N-terminalSMARTSM00663rpolaneu7coord: 2..100
e-value: 9.1E-5
score: -100.1
NoneNo IPR availableGENE3D3.30.1490.180coord: 12..74
e-value: 8.1E-26
score: 91.9
NoneNo IPR availablePANTHERPTHR19376:SF52DNA-DIRECTED RNA POLYMERASE II SUBUNIT 1coord: 2..100
NoneNo IPR availablePANTHERPTHR19376DNA-DIRECTED RNA POLYMERASEcoord: 2..100
NoneNo IPR availableSUPERFAMILY64484beta and beta-prime subunits of DNA dependent RNA-polymerasecoord: 2..100
IPR000722RNA polymerase, alpha subunitPFAMPF00623RNA_pol_Rpb1_2coord: 1..100
e-value: 1.3E-33
score: 116.6

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63594contigH-paniculata_contig63594:154..453 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63594.14159.1mRNA_H-paniculata_contig63594.14159.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig63594 154..453 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig63594.14159.1 ID=prot_H-paniculata_contig63594.14159.1|Name=mRNA_H-paniculata_contig63594.14159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVR
VDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006592RNA_pol_N
IPR000722RNA_pol_asu