mRNA_H-paniculata_contig63594.14159.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63594.14159.1
Unique NamemRNA_H-paniculata_contig63594.14159.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A6H5L9Y2_9PHAE (DNA-directed RNA polymerase subunit n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L9Y2_9PHAE)

HSP 1 Score: 197 bits (501), Expect = 1.520e-56
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVP+SIALNLTVPELVTAFNVEEMA+LVARGPLEHPGARYIVRHDGVRVDLR+VRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
Sbjct:  403 QVGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 502
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: D8LRY3_ECTSI (DNA-directed RNA polymerase subunit n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LRY3_ECTSI)

HSP 1 Score: 197 bits (501), Expect = 1.520e-56
Identity = 96/100 (96.00%), Postives = 100/100 (100.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVP+SIALNLTVPELVTAFNVEEMA+LVARGPLEHPGARYIVRHDGVRVDLR+VRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
Sbjct:  399 QVGVPKSIALNLTVPELVTAFNVEEMAQLVARGPLEHPGARYIVRHDGVRVDLRFVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 498
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A7S0T970_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0T970_9STRA)

HSP 1 Score: 157 bits (398), Expect = 1.160e-42
Identity = 71/100 (71.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRS+A+NLTVPE VTAFN+ E+++LVA GP  HPGA++I+R DG R+DLRYV+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  360 QVGVPRSVAMNLTVPERVTAFNIHELSQLVANGPTTHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 459
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: H3GA78_PHYRM (DNA-directed RNA polymerase subunit n=30 Tax=Oomycota TaxID=4762 RepID=H3GA78_PHYRM)

HSP 1 Score: 157 bits (396), Expect = 2.160e-42
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRSIA+NLTVPE VT FN+  M +L+A GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKV 499
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A0W8DAF9_PHYNI (DNA-directed RNA polymerase subunit n=3 Tax=Oomycota TaxID=4762 RepID=A0A0W8DAF9_PHYNI)

HSP 1 Score: 157 bits (396), Expect = 2.160e-42
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRSIA+NLTVPE VT FN+  M +L+A GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMNYMHQLIANGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMSHRVKV 499
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A836CHC4_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CHC4_9STRA)

HSP 1 Score: 156 bits (395), Expect = 2.950e-42
Identity = 75/100 (75.00%), Postives = 84/100 (84.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRSIALNLTVPE+VT FN E +  L+ +GP EHPGA++I+R DGVRVDLRYVRNK  L L  G+ VERHL DDD IIFNRQPSLHKMSIMGHRVKV
Sbjct:  394 QVGVPRSIALNLTVPEMVTTFNQERLLALINKGPYEHPGAKFIIRQDGVRVDLRYVRNKADLALVPGWTVERHLADDDYIIFNRQPSLHKMSIMGHRVKV 493
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: K3WV53_GLOUD (DNA-directed RNA polymerase subunit n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV53_GLOUD)

HSP 1 Score: 155 bits (392), Expect = 7.450e-42
Identity = 70/100 (70.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRSIA+NLTVPE VT FN+  M +L++ GPLEHPGA+YI+R DG R+DLRY++NK+ L L+ G+ VERHLRDDD+++FNRQPSLHKMSIM HRVKV
Sbjct:  385 QVGVPRSIAMNLTVPERVTPFNMAYMHQLISNGPLEHPGAKYIIREDGNRIDLRYIKNKSDLALKCGWIVERHLRDDDLVLFNRQPSLHKMSIMAHRVKV 484
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A1E7FK73_9STRA (DNA-directed RNA polymerase subunit n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7FK73_9STRA)

HSP 1 Score: 155 bits (392), Expect = 7.480e-42
Identity = 69/100 (69.00%), Postives = 89/100 (89.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRS+A+NLTVP+ VTAFN++E+++LV+ GP  HPGA++I+R DG R+DLRYV+NK+ L L +G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  362 QVGVPRSVAMNLTVPDRVTAFNMQELSQLVSNGPTMHPGAKHIIRSDGTRIDLRYVKNKSELLLAHGWVVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 461
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A448Z889_9STRA (DNA-directed RNA polymerase subunit n=2 Tax=Pseudo-nitzschia TaxID=41953 RepID=A0A448Z889_9STRA)

HSP 1 Score: 155 bits (391), Expect = 1.020e-41
Identity = 70/100 (70.00%), Postives = 88/100 (88.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRS+A+NLTVP+ VTAFN+ E+++LVA GP  HPGA++I+R+DG R+DLRYV+NK+ L L  G+ VER LRDDD+I+FNRQPSLHKMSIMGHRVKV
Sbjct:  361 QVGVPRSVAMNLTVPDRVTAFNITELSQLVANGPTTHPGAKHIIRNDGTRIDLRYVKNKSELLLAPGWIVERQLRDDDVILFNRQPSLHKMSIMGHRVKV 460
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BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Match: A0A024UAL5_9STRA (DNA-directed RNA polymerase subunit n=15 Tax=Aphanomyces TaxID=100860 RepID=A0A024UAL5_9STRA)

HSP 1 Score: 154 bits (390), Expect = 1.390e-41
Identity = 71/100 (71.00%), Postives = 87/100 (87.00%), Query Frame = 1 
Query:    1 KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVRVDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV 300
            +VGVPRSIA+NLTVPE VT FN+  M EL++RGPLEHPGA+YI+R DG R+DLRY+++K+ L L+ G+ VERHLRDDD ++FNRQPSLHKMSIM HRVKV
Sbjct:  400 QVGVPRSIAMNLTVPERVTPFNMVLMHELISRGPLEHPGAKYIIREDGNRIDLRYIKSKSELALKCGWIVERHLRDDDYVLFNRQPSLHKMSIMAHRVKV 499
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63594.14159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L9Y2_9PHAE1.520e-5696.00DNA-directed RNA polymerase subunit n=1 Tax=Ectoca... [more]
D8LRY3_ECTSI1.520e-5696.00DNA-directed RNA polymerase subunit n=2 Tax=Ectoca... [more]
A0A7S0T970_9STRA1.160e-4271.00DNA-directed RNA polymerase subunit n=1 Tax=Pseudo... [more]
H3GA78_PHYRM2.160e-4271.00DNA-directed RNA polymerase subunit n=30 Tax=Oomyc... [more]
A0A0W8DAF9_PHYNI2.160e-4271.00DNA-directed RNA polymerase subunit n=3 Tax=Oomyco... [more]
A0A836CHC4_9STRA2.950e-4275.00DNA-directed RNA polymerase subunit n=1 Tax=Tribon... [more]
K3WV53_GLOUD7.450e-4270.00DNA-directed RNA polymerase subunit n=1 Tax=Globis... [more]
A0A1E7FK73_9STRA7.480e-4269.00DNA-directed RNA polymerase subunit n=1 Tax=Fragil... [more]
A0A448Z889_9STRA1.020e-4170.00DNA-directed RNA polymerase subunit n=2 Tax=Pseudo... [more]
A0A024UAL5_9STRA1.390e-4171.00DNA-directed RNA polymerase subunit n=15 Tax=Aphan... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63594contigH-paniculata_contig63594:154..453 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score199.5
Seed ortholog evalue7.3e-49
Seed eggNOG ortholog2880.D8LRY3
Preferred nameRPB1
KEGG rclassRC02795
KEGG koko:K03006
KEGG ReactionR00435,R00441,R00442,R00443
KEGG Pathwayko00230,ko00240,ko01100,ko03020,ko05016,ko05168,ko05169,map00230,map00240,map01100,map03020,map05016,map05168,map05169
KEGG ModuleM00180
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000731,GO:0003674,GO:0003676,GO:0003677,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005665,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006351,GO:0006366,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009987,GO:0010467,GO:0010494,GO:0016070,GO:0016591,GO:0018130,GO:0019438,GO:0019985,GO:0030880,GO:0031974,GO:0031981,GO:0032774,GO:0032991,GO:0033554,GO:0034641,GO:0034645,GO:0034654,GO:0035770,GO:0036464,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0055029,GO:0061695,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097159,GO:0097659,GO:1901360,GO:1901362,GO:1901363,GO:1901576,GO:1902494,GO:1990234,GO:1990904
EggNOG free text desc.DNA-directed 5'-3' RNA polymerase activity
EggNOG OGsCOG0086@1,KOG0260@2759
EC2.7.7.6
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEbr01611,ko00000,ko00001,ko00002,ko01000,ko03021,ko03400
Exons1
Model size300
Cds size300
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930734.760426-CDS-H-paniculata_contig63594:153..4531622930734.760426-CDS-H-paniculata_contig63594:153..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63594 154..453 -
1691481428.5066628-CDS-H-paniculata_contig63594:153..4531691481428.5066628-CDS-H-paniculata_contig63594:153..453Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63594 154..453 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63594.14159.1prot_H-paniculata_contig63594.14159.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63594 154..453 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63594.14159.1

>prot_H-paniculata_contig63594.14159.1 ID=prot_H-paniculata_contig63594.14159.1|Name=mRNA_H-paniculata_contig63594.14159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=100bp
KVGVPRSIALNLTVPELVTAFNVEEMAELVARGPLEHPGARYIVRHDGVR
VDLRYVRNKNSLTLQYGYAVERHLRDDDIIIFNRQPSLHKMSIMGHRVKV
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mRNA from alignment at H-paniculata_contig63594:154..453-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63594.14159.1 ID=mRNA_H-paniculata_contig63594.14159.1|Name=mRNA_H-paniculata_contig63594.14159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=300bp|location=Sequence derived from alignment at H-paniculata_contig63594:154..453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGGGCGTACCGAGGTCGATCGCGCTGAACCTGACTGTCCCCGAGCT
AGTGACCGCCTTTAATGTTGAGGAGATGGCTGAGCTCGTGGCAAGGGGGC
CGCTCGAGCACCCTGGGGCTCGATATATCGTGCGGCACGACGGGGTAAGA
GTGGACCTACGATACGTTCGTAACAAAAACAGCTTGACGCTGCAGTATGG
GTATGCGGTGGAGAGGCATCTACGGGACGATGATATCATCATCTTCAACC
GGCAGCCATCGCTACATAAAATGTCTATCATGGGTCACCGTGTTAAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig63594:154..453-

>mRNA_H-paniculata_contig63594.14159.1 ID=mRNA_H-paniculata_contig63594.14159.1|Name=mRNA_H-paniculata_contig63594.14159.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=600bp|location=Sequence derived from alignment at H-paniculata_contig63594:154..453- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGGTGGGCGTACCGAGGTCGATCGCGCTGAACCTGACTGTCCCCGAGCT
AGTGACCGCCTTTAATGTTGAGGAGATGGCTGAGCTCGTGGCAAGGGGGC
CGCTCGAGCACCCTGGGGCTCGATATATCGTGCGGCACGACGGGGTAAGA
GTGGACCTACGATACGTTCGTAACAAAAACAGCTTGACGCTGCAGTATGG
GTATGCGGTGGAGAGGCATCTACGGGACGATGATATCATCATCTTCAACC
GGCAGCCATCGCTACATAAAATGTCTATCATGGGTCACCGTGTTAAGGTG
AAGGTGGGCGTACCGAGGTCGATCGCGCTGAACCTGACTGTCCCCGAGCT
AGTGACCGCCTTTAATGTTGAGGAGATGGCTGAGCTCGTGGCAAGGGGGC
CGCTCGAGCACCCTGGGGCTCGATATATCGTGCGGCACGACGGGGTAAGA
GTGGACCTACGATACGTTCGTAACAAAAACAGCTTGACGCTGCAGTATGG
GTATGCGGTGGAGAGGCATCTACGGGACGATGATATCATCATCTTCAACC
GGCAGCCATCGCTACATAAAATGTCTATCATGGGTCACCGTGTTAAGGTG
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