prot_H-paniculata_contig63001.14082.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig63001.14082.1
Unique Nameprot_H-paniculata_contig63001.14082.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length59
Homology
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: A0A6H5L1F0_9PHAE (CDC73_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.630e-22
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 
Query:    4 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 59
            +YYSL+QLV+LLEHADAPM  YIA C  + VKWVASIEKADVLAYLRGQT+DA Q+
Sbjct:   46 EYYSLKQLVILLEHADAPMVTYIAACTSKGVKWVASIEKADVLAYLRGQTDDAPQI 101
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.030e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 0 
Query:    4 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 59
            +YYSL+QLV+LLEHADAPM  YIA C  + VKWVASIEKADVLAYLRGQT+DA Q+
Sbjct:   46 EYYSLKQLVILLEHADAPMVTYIAACTSKGVKWVASIEKADVLAYLRGQTDDAAQI 101
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: A0A7S2V1X3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.920e-5
Identity = 20/56 (35.71%), Postives = 37/56 (66.07%), Query Frame = 0 
Query:    4 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 59
            ++Y L  LVL +++ADA +  Y+       V ++ +++K D+LAYLRG+++ + QV
Sbjct:   45 EFYPLNALVLFIQYADASVTDYLRATQNAKVPFIKTVDKGDLLAYLRGKSDSSLQV 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F0_9PHAE9.630e-2276.79CDC73_N domain-containing protein n=1 Tax=Ectocarp... [more]
D8LIK5_ECTSI2.030e-2076.79RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A7S2V1X3_9STRA4.920e-535.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032041Paf1 complex subunit Cdc73, N-terminal domainPFAMPF16050CDC73_Ncoord: 3..57
e-value: 4.5E-7
score: 29.5

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63001contigH-paniculata_contig63001:495..671 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63001.14082.1mRNA_H-paniculata_contig63001.14082.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig63001 495..671 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig63001.14082.1 ID=prot_H-paniculata_contig63001.14082.1|Name=mRNA_H-paniculata_contig63001.14082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
SPPQYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLR
GQTEDATQV
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032041Cdc73_N