mRNA_H-paniculata_contig63001.14082.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig63001.14082.1
Unique NamemRNA_H-paniculata_contig63001.14082.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: A0A6H5L1F0_9PHAE (CDC73_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1F0_9PHAE)

HSP 1 Score: 91.7 bits (226), Expect = 9.630e-22
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   10 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 177
            +YYSL+QLV+LLEHADAPM  YIA C  + VKWVASIEKADVLAYLRGQT+DA Q+
Sbjct:   46 EYYSLKQLVILLEHADAPMVTYIAACTSKGVKWVASIEKADVLAYLRGQTDDAPQI 101
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: D8LIK5_ECTSI (RNA pol II accessory factor, Cdc73 family protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIK5_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 2.030e-20
Identity = 43/56 (76.79%), Postives = 49/56 (87.50%), Query Frame = 1 
Query:   10 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 177
            +YYSL+QLV+LLEHADAPM  YIA C  + VKWVASIEKADVLAYLRGQT+DA Q+
Sbjct:   46 EYYSLKQLVILLEHADAPMVTYIAACTSKGVKWVASIEKADVLAYLRGQTDDAAQI 101
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BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Match: A0A7S2V1X3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V1X3_9STRA)

HSP 1 Score: 48.1 bits (113), Expect = 4.920e-5
Identity = 20/56 (35.71%), Postives = 37/56 (66.07%), Query Frame = 1 
Query:   10 QYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLRGQTEDATQV 177
            ++Y L  LVL +++ADA +  Y+       V ++ +++K D+LAYLRG+++ + QV
Sbjct:   45 EFYPLNALVLFIQYADASVTDYLRATQNAKVPFIKTVDKGDLLAYLRGKSDSSLQV 100
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig63001.14082.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5L1F0_9PHAE9.630e-2276.79CDC73_N domain-containing protein n=1 Tax=Ectocarp... [more]
D8LIK5_ECTSI2.030e-2076.79RNA pol II accessory factor, Cdc73 family protein ... [more]
A0A7S2V1X3_9STRA4.920e-535.71Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig63001contigH-paniculata_contig63001:495..671 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score92.4
Seed ortholog evalue7.4e-17
Seed eggNOG ortholog2880.D8LIK5
KEGG koko:K15175
Hectar predicted targeting categoryother localisation
GOsGO:0000122,GO:0000428,GO:0000988,GO:0000989,GO:0000993,GO:0001076,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0006139,GO:0006325,GO:0006355,GO:0006357,GO:0006396,GO:0006397,GO:0006464,GO:0006725,GO:0006807,GO:0006996,GO:0008023,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009891,GO:0009892,GO:0009893,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010557,GO:0010558,GO:0010604,GO:0010605,GO:0010628,GO:0010629,GO:0016043,GO:0016070,GO:0016071,GO:0016569,GO:0016570,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019538,GO:0019899,GO:0022607,GO:0022613,GO:0022618,GO:0030880,GO:0031123,GO:0031124,GO:0031323,GO:0031324,GO:0031325,GO:0031326,GO:0031327,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0034402,GO:0034622,GO:0034641,GO:0036211,GO:0043170,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045892,GO:0045893,GO:0045934,GO:0045935,GO:0045944,GO:0046483,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051171,GO:0051172,GO:0051173,GO:0051252,GO:0051253,GO:0051254,GO:0051276,GO:0055029,GO:0060255,GO:0061695,GO:0065003,GO:0065007,GO:0070013,GO:0070063,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0090304,GO:0140110,GO:1901360,GO:1901564,GO:1902494,GO:1902679,GO:1902680,GO:1903506,GO:1903507,GO:1903508,GO:1990234,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.recruitment of 3'-end processing factors to RNA polymerase II holoenzyme complex
EggNOG OGsCOG5157@1,KOG3786@2759
Ec32 ortholog descriptionRNA polymerase II accessory factor, Cdc73
Ec32 orthologEc-18_003280.1
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Exons1
Model size177
Cds size177
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930724.8054354-CDS-H-paniculata_contig63001:494..6711622930724.8054354-CDS-H-paniculata_contig63001:494..671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63001 495..671 +
1691481424.1176038-CDS-H-paniculata_contig63001:494..6711691481424.1176038-CDS-H-paniculata_contig63001:494..671Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig63001 495..671 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig63001.14082.1prot_H-paniculata_contig63001.14082.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig63001 495..671 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig63001.14082.1

>prot_H-paniculata_contig63001.14082.1 ID=prot_H-paniculata_contig63001.14082.1|Name=mRNA_H-paniculata_contig63001.14082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=59bp
SPPQYYSLQQLVLLLEHADAPMGVYIADCNRQNVKWVASIEKADVLAYLR
GQTEDATQV
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mRNA from alignment at H-paniculata_contig63001:495..671+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig63001.14082.1 ID=mRNA_H-paniculata_contig63001.14082.1|Name=mRNA_H-paniculata_contig63001.14082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=177bp|location=Sequence derived from alignment at H-paniculata_contig63001:495..671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCACCACAGTACTACAGCCTGCAGCAATTGGTGCTTCTGCTGGAACA
TGCAGACGCGCCAATGGGTGTTTACATTGCGGACTGTAACCGTCAAAATG
TGAAATGGGTGGCGTCCATCGAGAAGGCCGATGTCCTGGCGTATCTGCGT
GGGCAGACGGAGGATGCGACTCAGGTG
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Coding sequence (CDS) from alignment at H-paniculata_contig63001:495..671+

>mRNA_H-paniculata_contig63001.14082.1 ID=mRNA_H-paniculata_contig63001.14082.1|Name=mRNA_H-paniculata_contig63001.14082.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=354bp|location=Sequence derived from alignment at H-paniculata_contig63001:495..671+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
TCCCCACCACAGTACTACAGCCTGCAGCAATTGGTGCTTCTGCTGGAACA
TGCAGACGCGCCAATGGGTGTTTACATTGCGGACTGTAACCGTCAAAATG
TGAAATGGGTGGCGTCCATCGAGAAGGCCGATGTCCTGGCGTATCTGCGT
GGGCAGACGGAGGATGCGACTCAGGTGTCCCCACCACAGTACTACAGCCT
GCAGCAATTGGTGCTTCTGCTGGAACATGCAGACGCGCCAATGGGTGTTT
ACATTGCGGACTGTAACCGTCAAAATGTGAAATGGGTGGCGTCCATCGAG
AAGGCCGATGTCCTGGCGTATCTGCGTGGGCAGACGGAGGATGCGACTCA
GGTG
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