prot_H-paniculata_contig62951.14065.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig62951.14065.1
Unique Nameprot_H-paniculata_contig62951.14065.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length45
Homology
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BLAST of mRNA_H-paniculata_contig62951.14065.1 vs. uniprot
Match: D8LNK4_ECTSI (DNA polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.070e-13
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 0 
Query:    1 QVCGGFRRGKETCHDIDCLVSFRRGNGESGHEGFGEV 37
            +VCGGFRRGKET HD+D LVSFRRGNGE GH+GF E 
Sbjct:  383 EVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVEA 419
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62951.14065.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNK4_ECTSI7.070e-1378.38DNA polymerase mu n=1 Tax=Ectocarpus siliculosus T... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR028207DNA polymerase beta, palm domainPFAMPF14792DNA_pol_B_palmcoord: 1..29
e-value: 6.4E-6
score: 26.4
NoneNo IPR availableGENE3D3.30.460.10coord: 1..43
e-value: 2.9E-9
score: 39.0
NoneNo IPR availableSUPERFAMILY81301Nucleotidyltransferasecoord: 2..26

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62951contigH-paniculata_contig62951:500..634 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62951.14065.1mRNA_H-paniculata_contig62951.14065.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig62951 500..634 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig62951.14065.1 ID=prot_H-paniculata_contig62951.14065.1|Name=mRNA_H-paniculata_contig62951.14065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QVCGGFRRGKETCHDIDCLVSFRRGNGESGHEGFGEVCAWLTTV*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR028207DNA_pol_B_palm_palm