mRNA_H-paniculata_contig62951.14065.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig62951.14065.1
Unique NamemRNA_H-paniculata_contig62951.14065.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig62951.14065.1 vs. uniprot
Match: D8LNK4_ECTSI (DNA polymerase mu n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK4_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 7.070e-13
Identity = 29/37 (78.38%), Postives = 32/37 (86.49%), Query Frame = 1 
Query:    1 QVCGGFRRGKETCHDIDCLVSFRRGNGESGHEGFGEV 111
            +VCGGFRRGKET HD+D LVSFRRGNGE GH+GF E 
Sbjct:  383 EVCGGFRRGKETLHDVDVLVSFRRGNGEPGHQGFVEA 419
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig62951.14065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LNK4_ECTSI7.070e-1378.38DNA polymerase mu n=1 Tax=Ectocarpus siliculosus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig62951contigH-paniculata_contig62951:500..634 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score71.2
Seed ortholog evalue1.4e-10
Seed eggNOG ortholog2880.D8LNK4
Preferred nameDNTT
KEGG koko:K00977,ko:K03512,ko:K03513,ko:K06636,ko:K10981
KEGG Pathwayko03410,ko03450,ko04110,ko04111,ko04113,ko04114,ko04640,map03410,map03450,map04110,map04111,map04113,map04114,map04640
KEGG ModuleM00296
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000278,GO:0000726,GO:0000731,GO:0000785,GO:0000790,GO:0000791,GO:0001775,GO:0002200,GO:0002376,GO:0002377,GO:0002440,GO:0002520,GO:0002521,GO:0002566,GO:0003674,GO:0003824,GO:0003887,GO:0003896,GO:0003899,GO:0003912,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006260,GO:0006261,GO:0006269,GO:0006281,GO:0006284,GO:0006287,GO:0006301,GO:0006302,GO:0006303,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0007049,GO:0007275,GO:0007584,GO:0008150,GO:0008152,GO:0009058,GO:0009059,GO:0009605,GO:0009987,GO:0009991,GO:0010033,GO:0010243,GO:0014070,GO:0014074,GO:0016070,GO:0016363,GO:0016445,GO:0016446,GO:0016740,GO:0016772,GO:0016779,GO:0016829,GO:0016835,GO:0018130,GO:0019438,GO:0019985,GO:0022402,GO:0030097,GO:0030098,GO:0030154,GO:0030183,GO:0031667,GO:0031974,GO:0031981,GO:0032501,GO:0032502,GO:0032774,GO:0033198,GO:0033260,GO:0033554,GO:0034061,GO:0034062,GO:0034399,GO:0034641,GO:0034645,GO:0034654,GO:0042113,GO:0042221,GO:0042276,GO:0042493,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044444,GO:0044446,GO:0044454,GO:0044464,GO:0044786,GO:0045321,GO:0046483,GO:0046649,GO:0046683,GO:0048513,GO:0048534,GO:0048731,GO:0048856,GO:0048869,GO:0050896,GO:0051575,GO:0051716,GO:0061674,GO:0070013,GO:0071704,GO:0071897,GO:0090304,GO:0097747,GO:0140097,GO:0140098,GO:1901360,GO:1901362,GO:1901576,GO:1901698,GO:1901700,GO:1902969,GO:1903047,GO:1990506
EggNOG free text desc.DNA-directed DNA polymerase activity
EggNOG OGsCOG1796@1,KOG2534@2759
EC2.7.7.31,2.7.7.7
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03036,ko03400
Exons1
Model size135
Cds size135
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930720.8529978-CDS-H-paniculata_contig62951:499..6341622930720.8529978-CDS-H-paniculata_contig62951:499..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62951 500..634 -
1691481422.0812893-CDS-H-paniculata_contig62951:499..6341691481422.0812893-CDS-H-paniculata_contig62951:499..634Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig62951 500..634 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig62951.14065.1prot_H-paniculata_contig62951.14065.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig62951 500..634 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig62951.14065.1

>prot_H-paniculata_contig62951.14065.1 ID=prot_H-paniculata_contig62951.14065.1|Name=mRNA_H-paniculata_contig62951.14065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=45bp
QVCGGFRRGKETCHDIDCLVSFRRGNGESGHEGFGEVCAWLTTV*
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mRNA from alignment at H-paniculata_contig62951:500..634-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig62951.14065.1 ID=mRNA_H-paniculata_contig62951.14065.1|Name=mRNA_H-paniculata_contig62951.14065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=135bp|location=Sequence derived from alignment at H-paniculata_contig62951:500..634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGCGGAGGTTTTCGTAGAGGAAAAGAAACATGTCACGACATCGA
CTGTCTCGTCTCGTTCCGGAGAGGAAATGGGGAGTCCGGGCACGAAGGCT
TCGGGGAGGTGTGTGCATGGTTAACAACCGTGTAG
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Coding sequence (CDS) from alignment at H-paniculata_contig62951:500..634-

>mRNA_H-paniculata_contig62951.14065.1 ID=mRNA_H-paniculata_contig62951.14065.1|Name=mRNA_H-paniculata_contig62951.14065.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=270bp|location=Sequence derived from alignment at H-paniculata_contig62951:500..634- (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTATGCGGAGGTTTTCGTAGAGGAAAAGAAACATGTCACGACATCGA
CTGTCTCGTCTCGTTCCGGAGAGGAAATGGGGAGTCCGGGCACGAAGGCT
TCGGGGAGGTGTGTGCATGGTTAACAACCGTGTAGCAGGTATGCGGAGGT
TTTCGTAGAGGAAAAGAAACATGTCACGACATCGACTGTCTCGTCTCGTT
CCGGAGAGGAAATGGGGAGTCCGGGCACGAAGGCTTCGGGGAGGTGTGTG
CATGGTTAACAACCGTGTAG
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