prot_H-paniculata_contig622.13965.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig622.13965.1
Unique Nameprot_H-paniculata_contig622.13965.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length359
Homology
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BLAST of mRNA_H-paniculata_contig622.13965.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 9.540e-23
Identity = 215/263 (81.75%), Postives = 234/263 (88.97%), Query Frame = 0 
Query:   70 KSSINQVGDHIEEMGLSGAVAEVDSLGIARFDPTSMVAWREKQTLGLMKSEAFERAKEHFTSEEGLTSLNMESSDKLGDVGVSALAKQCRSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSDLPFKVSDVTLLALGEGCPGLQRLSIAGCDGVT 332
            KS+IN VG HI+ MGL+ A   +D  G+A+FD +SMVAWREKQTL  MKSE  ERA++ FT +EGLTSL++  +  +GD GV+ L  QCR L+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRS+LPFKV DVTL+ALGEGCP LQ LS+ GCDGVT
Sbjct:    8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVT 269
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig622.13965.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LPS0_ECTSI9.540e-2381.75Hypothetical leucine rich repeat calmodulin bindin... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR006553Leucine-rich repeat, cysteine-containing subtypeSMARTSM00367LRR_CC_2coord: 184..209
e-value: 0.024
score: 23.8
coord: 132..157
e-value: 36.0
score: 10.2
coord: 262..287
e-value: 9.3E-5
score: 31.8
coord: 343..359
e-value: 550.0
score: 0.9
coord: 288..316
e-value: 84.0
score: 7.3
coord: 236..261
e-value: 0.078
score: 22.1
coord: 317..342
e-value: 0.019
score: 24.2
coord: 158..183
e-value: 1.0E-4
score: 31.6
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 303..359
e-value: 7.7E-12
score: 46.2
coord: 112..302
e-value: 9.2E-38
score: 131.8
IPR001611Leucine-rich repeatPFAMPF13516LRR_6coord: 317..337
e-value: 1.5
score: 9.0
coord: 262..283
e-value: 0.034
score: 14.2
coord: 135..155
e-value: 0.1
score: 12.7
coord: 157..181
e-value: 0.18
score: 11.9
coord: 183..206
e-value: 0.0076
score: 16.2
NoneNo IPR availablePANTHERPTHR13382:SF6SCF E3 UBIQUITIN LIGASE COMPLEX F-BOX PROTEIN GRR1coord: 37..298
coord: 234..356
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 37..298
NoneNo IPR availablePANTHERPTHR13382MITOCHONDRIAL ATP SYNTHASE COUPLING FACTOR Bcoord: 234..356
NoneNo IPR availableSUPERFAMILY52047RNI-likecoord: 133..354

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig622contigH-paniculata_contig622:763..6022 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig622.13965.1mRNA_H-paniculata_contig622.13965.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig622 763..6023 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig622.13965.1 ID=prot_H-paniculata_contig622.13965.1|Name=mRNA_H-paniculata_contig622.13965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=359bp
ASVTSHVSSAIKAYEQTISLPYDDLPPEVCQPIPGTREIDLSTWSLLVND
ASVSRIAAMNRNRIERLAEKSSINQVGDHIEEMGLSGAVAEVDSLGIARF
DPTSMVAWREKQTLGLMKSEAFERAKEHFTSEEGLTSLNMESSDKLGDVG
VSALAKQCRSLRSLNISGTHRVTDVAIRALAVNCTGLTKLNLSGCTGISG
PGLAALGECCHKMMDLDLSDSMRIGHWVLTRVFRGCHELETLSLAHCPKV
GDEELKKLGVGCRSLSKLNLRNCNQISDKGLLEVARRCAGLTTLELSRSD
LPFKVSDVTLLALGEGCPGLQRLSIAGCDGVTDVGLSWMSNGCPALEHLD
ISDCHQAST
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR006553Leu-rich_rpt_Cys-con_subtyp
IPR032675LRR_dom_sf
IPR001611Leu-rich_rpt