mRNA_H-paniculata_contig622.13965.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig622.13965.1 vs. uniprot
Match: D8LPS0_ECTSI (Hypothetical leucine rich repeat calmodulin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LPS0_ECTSI) HSP 1 Score: 110 bits (275), Expect = 9.540e-23 Identity = 215/263 (81.75%), Postives = 234/263 (88.97%), Query Frame = 1
Query: 208 KSSINQVGDHIEEMGLSGAVAEVDSLGIARFDPTSMVAWREKQTLGLMKSEAFERAKEHFTSEEGLTSLNMESSDKLGDVGVSALAKQCRSLRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSDLPFKVSDVTLLALGEGCPGLQRLSIAGCDGVT 996
KS+IN VG HI+ MGL+ A +D G+A+FD +SMVAWREKQTL MKSE ERA++ FT +EGLTSL++ + +GD GV+ L QCR L+XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRS+LPFKV DVTL+ALGEGCP LQ LS+ GCDGVT
Sbjct: 8 KSNIN-VGCHIDAMGLTAAFKGMDPSGVAQFDASSMVAWREKQTLERMKSEEIERAQDRFTDQEGLTSLDISGAQGVGDSGVAVLTAQCRRLQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXELSRSELPFKVGDVTLMALGEGCPELQWLSVKGCDGVT 269 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig622.13965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 1
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig622.13965.1 >prot_H-paniculata_contig622.13965.1 ID=prot_H-paniculata_contig622.13965.1|Name=mRNA_H-paniculata_contig622.13965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=359bp ASVTSHVSSAIKAYEQTISLPYDDLPPEVCQPIPGTREIDLSTWSLLVNDback to top mRNA from alignment at H-paniculata_contig622:763..6023+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig622.13965.1 ID=mRNA_H-paniculata_contig622.13965.1|Name=mRNA_H-paniculata_contig622.13965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=5261bp|location=Sequence derived from alignment at H-paniculata_contig622:763..6023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig622:763..6023+ >mRNA_H-paniculata_contig622.13965.1 ID=mRNA_H-paniculata_contig622.13965.1|Name=mRNA_H-paniculata_contig622.13965.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2154bp|location=Sequence derived from alignment at H-paniculata_contig622:763..6023+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |