prot_H-paniculata_contig584.13444.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig584.13444.1
Unique Nameprot_H-paniculata_contig584.13444.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length412
Homology
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: D8LQ38_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQ38_ECTSI)

HSP 1 Score: 150 bits (378), Expect = 4.040e-37
Identity = 79/169 (46.75%), Postives = 109/169 (64.50%), Query Frame = 0
Query:   11 VLRNVTGLMGAMLALIVMLNVINRCQNRRRSKKLEQSIFTLPCYVY-PSREKRAEAMREARGRLRAPLDVARDIDLEEQASDGEASDDS----------------NMVSP-SCTICLSVYENEEVIKVLPCGHDFHAECLDPWLQLKATCPLCKTQPFIKAKERSRRGH 161
            + +N+TG++GAM+ + ++LNV NR  NRRRS+KL++SIFTLP YVY  S  +RA+A R AR +L+APLD ++ I+    A                         +  SP +C ICL+ Y+ EEVIKVLPCGHDFH++CLDPWL++KA CPLCK   F K+++R    H
Sbjct:   29 IFKNITGILGAMVGVALLLNVFNRVSNRRRSRKLKKSIFTLPVYVYNSSTRERAKAARTARPQLQAPLDSSQGIEDVGSARSSXXXXXXXXXXXXXXXXXXXXXXDSASPITCAICLAAYQEEEVIKVLPCGHDFHSDCLDPWLEVKAECPLCKAPAFTKSRDRDEVAH 197          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A4S8ICW5_MUSBA (RING-type domain-containing protein n=2 Tax=Musa TaxID=4640 RepID=A0A4S8ICW5_MUSBA)

HSP 1 Score: 75.1 bits (183), Expect = 2.170e-12
Identity = 30/55 (54.55%), Postives = 41/55 (74.55%), Query Frame = 0
Query:   97 DSNMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPF 150
            D    +  C+ICLS YE+ +V++VLP CGH FH +C+DPWL+L+ TCPLC+T P 
Sbjct:   93 DEGGAASRCSICLSEYEDADVLRVLPDCGHLFHLKCVDPWLRLRPTCPLCRTSPL 147          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A835HCR3_9MAGN (RING-type domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835HCR3_9MAGN)

HSP 1 Score: 74.3 bits (181), Expect = 3.880e-12
Identity = 29/47 (61.70%), Postives = 38/47 (80.85%), Query Frame = 0
Query:  105 CTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPF 150
            C+ICLS YEN ++++VLP CGH FH +C+DPWLQL+ TCPLC+  P 
Sbjct:  100 CSICLSDYENTDMLRVLPDCGHLFHEKCVDPWLQLRPTCPLCRKSPI 146          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A444E142_ENSVE (RING-type domain-containing protein n=2 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444E142_ENSVE)

HSP 1 Score: 73.6 bits (179), Expect = 7.560e-12
Identity = 30/54 (55.56%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   97 DSNMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQP 149
            D    +  C ICLS YE+ +V++VLP CGH FH  C+DPWL+L+ TCPLC+T P
Sbjct:   93 DEGGAASRCPICLSEYEDADVLRVLPECGHLFHLNCVDPWLRLRPTCPLCRTSP 146          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A2P5G1E6_TREOI (43kDa postsynaptic protein n=2 Tax=Cannabaceae TaxID=3481 RepID=A0A2P5G1E6_TREOI)

HSP 1 Score: 73.9 bits (180), Expect = 8.660e-12
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 0
Query:   86 EEQASDGEASDDSNMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPFIKAKERS 157
            E +   G+ S  ++    +C++CL+ Y+  +V++VLP CGH FH  C+DPWL+L+ TCPLC+  P + A   S
Sbjct:   77 ESRGGGGDCSRAADKAFSTCSVCLADYQGSDVLRVLPDCGHVFHVRCVDPWLRLRPTCPLCRNTPNVAASVES 149          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A1J7HEV8_LUPAN (RING-type domain-containing protein n=2 Tax=Lupinus TaxID=3869 RepID=A0A1J7HEV8_LUPAN)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   98 SNMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPF 150
            S+  +  CTICLS Y   ++I+VLP C H FH +C+DPWL+L  TCP+C+T PF
Sbjct:   98 SDSTATCCTICLSDYMGSDMIRVLPDCDHQFHLKCIDPWLRLHPTCPVCRTSPF 151          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: UPI0005278723 (RING-H2 finger protein ATL70-like n=2 Tax=Eucalyptus grandis TaxID=71139 RepID=UPI0005278723)

HSP 1 Score: 73.2 bits (178), Expect = 1.230e-11
Identity = 29/52 (55.77%), Postives = 39/52 (75.00%), Query Frame = 0
Query:  102 SPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPFIK 152
            S SC+ICL  YE  +V+++LP CGH FH EC+DPWL+L ATCP+C+  P  +
Sbjct:   99 SCSCSICLGEYEESDVLRLLPECGHFFHMECVDPWLRLHATCPVCRKSPVAQ 150          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A8J5F8E6_ZINOF (RING-type domain-containing protein n=4 Tax=Zingiber officinale TaxID=94328 RepID=A0A8J5F8E6_ZINOF)

HSP 1 Score: 73.6 bits (179), Expect = 1.360e-11
Identity = 29/54 (53.70%), Postives = 39/54 (72.22%), Query Frame = 0
Query:   98 SNMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPF 150
            S   +  C+ICLS Y+  +V++VLP CGH FH  C+DPWL+L+ TCPLC+T P 
Sbjct:  120 STPAAACCSICLSDYKESDVVRVLPECGHVFHLRCVDPWLRLRPTCPLCRTSPL 173          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: A0A7N2RD72_QUELO (RING-type domain-containing protein n=5 Tax=Fagaceae TaxID=3503 RepID=A0A7N2RD72_QUELO)

HSP 1 Score: 72.0 bits (175), Expect = 1.790e-11
Identity = 30/61 (49.18%), Postives = 43/61 (70.49%), Query Frame = 0
Query:   99 NMVSPSCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPFIKAKERSR 158
            N VS SC+ICL  Y++ +V+++LP CGH FH +C+D WL+L ATCPLC+  P  +    +R
Sbjct:   83 NSVSSSCSICLGDYKDTDVLRLLPDCGHLFHLKCVDSWLRLHATCPLCRKSPLDEVASSTR 143          
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Match: S8C9B8_9LAMI (RING-type domain-containing protein (Fragment) n=1 Tax=Genlisea aurea TaxID=192259 RepID=S8C9B8_9LAMI)

HSP 1 Score: 71.6 bits (174), Expect = 1.980e-11
Identity = 29/48 (60.42%), Postives = 36/48 (75.00%), Query Frame = 0
Query:  104 SCTICLSVYENEEVIKVLP-CGHDFHAECLDPWLQLKATCPLCKTQPF 150
            SCTICL+ Y N +VI+ LP CGH FH  C+DPWL+L  TCP+C+T P 
Sbjct:   80 SCTICLADYRNADVIRRLPKCGHLFHVTCIDPWLRLHPTCPVCRTPPL 127          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig584.13444.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LQ38_ECTSI4.040e-3746.75RING-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A4S8ICW5_MUSBA2.170e-1254.55RING-type domain-containing protein n=2 Tax=Musa T... [more]
A0A835HCR3_9MAGN3.880e-1261.70RING-type domain-containing protein n=1 Tax=Coptis... [more]
A0A444E142_ENSVE7.560e-1255.56RING-type domain-containing protein n=2 Tax=Ensete... [more]
A0A2P5G1E6_TREOI8.660e-1241.1043kDa postsynaptic protein n=2 Tax=Cannabaceae Tax... [more]
A0A1J7HEV8_LUPAN1.230e-1153.70RING-type domain-containing protein n=2 Tax=Lupinu... [more]
UPI00052787231.230e-1155.77RING-H2 finger protein ATL70-like n=2 Tax=Eucalypt... [more]
A0A8J5F8E6_ZINOF1.360e-1153.70RING-type domain-containing protein n=4 Tax=Zingib... [more]
A0A7N2RD72_QUELO1.790e-1149.18RING-type domain-containing protein n=5 Tax=Fagace... [more]
S8C9B8_9LAMI1.980e-1160.42RING-type domain-containing protein (Fragment) n=1... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011016Zinc finger, RING-CH-typeSMARTSM00744ringv_2coord: 104..146
e-value: 0.0064
score: 8.8
IPR001841Zinc finger, RING-typeSMARTSM00184ring_2coord: 105..145
e-value: 9.4E-9
score: 45.1
IPR001841Zinc finger, RING-typePFAMPF13639zf-RING_2coord: 104..146
e-value: 1.1E-12
score: 48.0
IPR001841Zinc finger, RING-typePROSITEPS50089ZF_RING_2coord: 105..146
score: 13.286
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 61..150
e-value: 8.6E-19
score: 69.0
NoneNo IPR availablePANTHERPTHR14155RING FINGER DOMAIN-CONTAININGcoord: 19..176
NoneNo IPR availablePANTHERPTHR14155:SF496E3 UBIQUITIN-PROTEIN LIGASE ATL41coord: 19..176
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 33..411
NoneNo IPR availableSUPERFAMILY57850RING/U-boxcoord: 104..152
NoneNo IPR availableTMHMMTMhelixcoord: 15..32

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig584contigH-paniculata_contig584:26053..30837 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig584.13444.1mRNA_H-paniculata_contig584.13444.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig584 24121..33443 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig584.13444.1 ID=prot_H-paniculata_contig584.13444.1|Name=mRNA_H-paniculata_contig584.13444.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=412bp
MCNLCLEVQQVLRNVTGLMGAMLALIVMLNVINRCQNRRRSKKLEQSIFT
LPCYVYPSREKRAEAMREARGRLRAPLDVARDIDLEEQASDGEASDDSNM
VSPSCTICLSVYENEEVIKVLPCGHDFHAECLDPWLQLKATCPLCKTQPF
IKAKERSRRGHSHGNGQSQAHVAAESGQPATQASVHPRRGQALLREPPFV
AGPRDMVDGGVARVGVVNGGVNLGVGLILPEGTEECAGGRGEERNEILMD
GGKAAGVIGEDGITVTAQQQQQEDDNDEEDGLGSEELAGGAEGVVECDNV
DDSIQKKPGHDTEVKIRDAGNDDVAVAVRTAAAAAAAVDEPEVSVGNATG
PAREMTRIVGDDRQLGHAGLRNTMEGSDNGDAAGRFVKVAKQEGKLGRVG
VGAPFQTSTPR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011016Znf_RING-CH
IPR001841Znf_RING
IPR013083Znf_RING/FYVE/PHD