mRNA_H-paniculata_contig57565.13326.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1HEX2_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella zimbabwensis TaxID=268475 RepID=A0A0V1HEX2_9BILA) HSP 1 Score: 84.7 bits (208), Expect = 4.290e-15 Identity = 66/235 (28.09%), Postives = 110/235 (46.81%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKM--LVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R T + L++ + +S+LP EY + P+ LL ER+R + T V V +K+NV + R CF+C+ +GHL NC + K G S F + F + C W+ADSGA+ HMT + E + D+ T + V + NG+ +P+ G+G + V++K + +++ + V +VP L NLFS++ ++GF +G
Sbjct: 21 RLTATQLPDLLLMCRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRKCFKCHRIGHLAKNCTMK---TVKNAGQSRQS------FGGETFLCYRTEDNRNTCR-VWLADSGASQHMTRNKEYLADFVTFPQPVNVKIGNGDAIPVYGWGTVNFKVFIKGKWILNRMEV--VWYVPKLGLNLFSIEKAAEKGFNFTANVDG 243
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0WE00_9BILA (Copia protein n=4 Tax=Trichinella sp. T6 TaxID=92179 RepID=A0A0V0WE00_9BILA) HSP 1 Score: 84.3 bits (207), Expect = 6.280e-15 Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R GT + L++++ +S+LP +Y + P+ LL ER+R + T V V K+NV + R CF+C+ +GHL NC + + G + S F + F + C W+ADSGA+ HMT + E + D+ T + V V NG+ +P G+G + + +G+ + V +VP L NLFS+ ++GF G
Sbjct: 152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: Q967L5_AEDAE (Uncharacterized protein n=1 Tax=Aedes aegypti TaxID=7159 RepID=Q967L5_AEDAE) HSP 1 Score: 84.7 bits (208), Expect = 6.800e-15 Identity = 72/276 (26.09%), Postives = 123/276 (44.57%), Query Frame = 1
Query: 4 LKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVFV--------RDHLRMEPM---LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSS-------DGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSNLFVTVANGETLPIEGYGK-MLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAIALPNGN 774
+ S D ++ E++ + + GT + ++ I L SLP + + +D + +E + L+ E +R + RD + + ++T V E+RVCF C + GHL+ NC +++ K + SS P S R I V + W+ DSGA+AHMT +E ++T+A+G+ I G G +L + E+ + +S V +VPGL TNL S++ + ++ V +G I P GN
Sbjct: 108 INLSERGDLEQHLFEVDDLFDRLDAAGTTLDADTKICLLLRSLPPSFDGLVTALDSRSQDDITLEVVKSKLMDEFLRRLERDGHPVKKEKAMKTAV-----TKTGETRVCFYCKKPGHLQRNC-RKLLEAKKEENNTSSSGTKPKKSDSVKAKAVHSDTRGIAFVVNGENARS-WIIDSGASAHMTCDKSFFITFEESCGGYITLADGKKTQILGEGAGVLHGIDGDDEVIRIDISGVKYVPGLSTNLISVEKLAQKKLDVSFNSDGCRIIDPKGN 376
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1B5K0_TRISP (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=6 Tax=Trichinella TaxID=6333 RepID=A0A0V1B5K0_TRISP) HSP 1 Score: 84.3 bits (207), Expect = 9.520e-15 Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R GT + L++++ +S+LP +Y + P+ LL ER+R + T V V K+NV + R CF+C+ +GHL NC + + G + S F + F + C W+ADSGA+ HMT + E + D+ T + V V NG+ +P G+G + + +G+ + V +VP L NLFS+ ++GF G
Sbjct: 152 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTNTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 374
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1L945_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=3 Tax=Trichinella TaxID=6333 RepID=A0A0V1L945_9BILA) HSP 1 Score: 84.3 bits (207), Expect = 9.640e-15 Identity = 66/233 (28.33%), Postives = 105/233 (45.06%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R GT + L++++ +S+LP +Y + P+ LL ER+R + T V V K+NV + R CF+C+ +GHL NC + + G + S F + F + C W+ADSGA+ HMT + E + D+ T + V V NG+T+P G G + + +G+ + V +VP L NLFS+ ++GF G
Sbjct: 163 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 385
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0TK25_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=8 Tax=Trichinella TaxID=6333 RepID=A0A0V0TK25_9BILA) HSP 1 Score: 84.0 bits (206), Expect = 1.310e-14 Identity = 65/233 (27.90%), Postives = 105/233 (45.06%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R GT + L++++ +S+LP +Y + P+ LL ER+R + T V V K+NV + R CF+C+ +GHL NC + + G + S F + F + C W+ADSGA+ HMT + E + D+ T + V V NG+ +P G+G + + +G+ + V +VP L NLFS+ ++GF G
Sbjct: 945 RLTGTQLPDLLLMSRIMSTLPQDYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGQSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDAIPAYGHGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 1167
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V1M1K0_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=13 Tax=Trichinella TaxID=6333 RepID=A0A0V1M1K0_9BILA) HSP 1 Score: 81.6 bits (200), Expect = 7.590e-14 Identity = 67/233 (28.76%), Postives = 106/233 (45.49%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVA-ESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R GT + L++++ +S+LP EY + P+ LL ER+R + T V V +K+NV + R CF+C+ +GHL NC + K G S + F +R D + C W+ADSGA+ HMT + E + D+ T + V + NG+ +P G G + + +G+ + V +VP L NLFS+ +GF +G
Sbjct: 152 RLTGTQLPDLLLMSRIMSTLPQEYFEFKTVWESVPVGERSVNLLIERLRLIEMRLPEKTTDSSVALTVKADSKENVKKDKRRCFKCHRIGHLAKNCTMK---TVKNAGQSRQSFGGGSFFC---YRAEDNR---NTCR-MWLADSGASQHMTHNKEYLADFVTFPQPVNVKIRNGDAIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKAADKGFYFTANADG 374
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A3M6VPY8_9STRA (CCHC-type domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VPY8_9STRA) HSP 1 Score: 81.3 bits (199), Expect = 7.920e-14 Identity = 73/247 (29.55%), Postives = 112/247 (45.34%), Query Frame = 1
Query: 73 RSLGTDI--ASELVINKFLSSLPSEYVFVRDHLRMEPMLLPERVRAVVRDKY------------LSTAPEGVRTV-VFF-------GNKKNVAESRV-----CFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETC-SNLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTV 729
+SLG I A +LV+ LSSLP+EY + + + V+ + KY L G+++ F G K N++ R+ CF C++ GH+K R CP KG G E A+F++ R W+ DSGATAHMTP E +FDY+ +++ VT+A+G+ + + G G + + D I V H+PGLD L S+ + ++G V
Sbjct: 22 QSLGEPIDEARQLVV--LLSSLPAEYEIIASIVENAKDVTLIEVKEKLLKKYKRQDKKEATERALKVTTHGIKSKNARFDKSGRNNGRKDNISRKRIGFEGKCFNCDKFGHMK-----RECPDFKGPGKNEED----AVFAAGESR-----------SSGWLIDSGATAHMTPHREDLFDYKNLVTSIEVTIADGKKIRVVGTGSVRLTGIDGKRIRMLD---VLHIPGLDRRLLSVGKLAERGLNV 243
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A0V0Z7R7_9BILA (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trichinella patagoniensis TaxID=990121 RepID=A0A0V0Z7R7_9BILA) HSP 1 Score: 79.7 bits (195), Expect = 2.750e-13 Identity = 65/233 (27.90%), Postives = 104/233 (44.64%), Query Frame = 1
Query: 73 RSLGTDIASELVINKFLSSLPSEYVFVRDHLRMEPM------LLPERVRAVVRDKYLSTAPEGVRTVVFFGNKKNVAESR-VCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCSN-LFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEG 747
R T + L++++ +S+LP +Y + P+ LL ER+R + T V V K+NV + R CF+C+ +GHL NC + + G + S F + F + C W+ADSGA+ HMT + E + D+ T + V V NG+T+P G G + + +G+ + V +VP L NLFS+ ++GF G
Sbjct: 151 RLTSTQLPDLLLMSRIMSTLPQDYFEFKIVWESLPVGERSVNLLIERLRLIEMRLPEKTTDSSVVLTVKTDTKENVKKDRRKCFKCHRIGHLAKNCTMK---TVRNAGKSQQS------FGGESFFCYHAEDNRNTCR-MWLADSGASQHMTRNKEYLSDFVTFPKPVNVKVGNGDTIPAYGRGTVNFKVFIKGKWILNRMEDVWYVPKLGLNLFSIGKATEKGFNFTANAAG 373
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Match: A0A329SN38_9STRA (Uncharacterized protein n=1 Tax=Phytophthora cactorum TaxID=29920 RepID=A0A329SN38_9STRA) HSP 1 Score: 78.2 bits (191), Expect = 8.470e-13 Identity = 70/244 (28.69%), Postives = 110/244 (45.08%), Query Frame = 1
Query: 88 DIASELVINKFLSSLPSEYVFVRDH---------LRMEPMLLPERVRAVVRD------KYLSTAPEGVRTVVFFGNK-----KNVAESRVCFQCNELGHLKMNCPQRICPICKGIGHGESSHRLPAMFSSDGFRDIDKPVPVDGCEEFWVADSGATAHMTPSNELMFDYETCS-NLFVTVANGETLPIEGYGKMLVWMKDRGEIHKFSLSRVAHVPGLDTNLFSLQVVVKQGFTVCLKEEGAAI 756
D A +LVI LSSLP+EY + + ++ LL E R +D K + + F G K KN A C+ C+++GH+K +CP + + E A+F+ + K G W+ DSGATAHMTP +F+YE N+ VT+A+G+ + + G G + + D I + V H+PGLD L S+ + ++G +V ++ I
Sbjct: 139 DEARQLVI--LLSSLPTEYELISSIVENSKDVTLIEVKERLLKEYERLEKKDGTESALKATANGGKFKNAKSFKGRKGNSARKNNAFKGKCYNCDQIGHMKRDCPS------SNVSNDEE-----AVFA------VGK-----GRSAGWLIDSGATAHMTPHRNDLFEYEDLEENIEVTIADGKKIRVVGTGSVRLMGIDGKRI---KMVEVLHIPGLDRRLLSVGKLAERGMSVEFQQNSCVI 355 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig57565.13326.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig57565.13326.1 >prot_H-paniculata_contig57565.13326.1 ID=prot_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=261bp QLKYSRGQDPDEFWVELEKVQTHARSLGTDIASELVINKFLSSLPSEYVFback to top mRNA from alignment at H-paniculata_contig57565:13..1017- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig57565.13326.1 ID=mRNA_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1005bp|location=Sequence derived from alignment at H-paniculata_contig57565:13..1017- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig57565:13..1017- >mRNA_H-paniculata_contig57565.13326.1 ID=mRNA_H-paniculata_contig57565.13326.1|Name=mRNA_H-paniculata_contig57565.13326.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1566bp|location=Sequence derived from alignment at H-paniculata_contig57565:13..1017- (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |