prot_H-paniculata_contig5409.12850.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5409.12850.1
Unique Nameprot_H-paniculata_contig5409.12850.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length317
Homology
BLAST of mRNA_H-paniculata_contig5409.12850.1 vs. uniprot
Match: D7G122_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G122_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 2.360e-23
Identity = 50/144 (34.72%), Postives = 81/144 (56.25%), Query Frame = 0
Query:  166 LIDVSAMTLVRMSSPSYDPRTEQEGGCGVKMGCGPARTRDGKLKSTSRWSCSEKLGRGRCVVKYSFETPQDLHNLRMAFHEGDRSRHTLQVLADGKEIALVKTSGKTLDFQDWDIDAKAVSTLALQAVDLNPNYWIHVTEVEIL 309
            L+D    T V   + +YD RT + GGC    GC  + TRD   +  SRWSCSEKL   +C + Y FE PQD+  +++ F++GD    TL++         + +SG +  ++ WDI+      L+++A++L+ + WI +TEV  +
Sbjct:    4 LVDARKRTTVNKWANAYDDRTSEYGGCDPD-GCKASLTRDQSWQDESRWSCSEKLEDAQCKITYKFEEPQDIVRIKIKFYKGDERVRTLKLKGSDGFEKTITSSGTSSKYETWDINTDETKWLSMEALNLDDDEWISITEVRFM 146          
BLAST of mRNA_H-paniculata_contig5409.12850.1 vs. uniprot
Match: A0A6H5L4E8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4E8_9PHAE)

HSP 1 Score: 91.3 bits (225), Expect = 1.310e-16
Identity = 48/143 (33.57%), Postives = 78/143 (54.55%), Query Frame = 0
Query:  166 LIDVSAMTLVRMSSPSYDPRTEQEGGCGVKMGCGPARTRDGKLKSTSRWSCSEKLGRGRCVVKYSFETPQDLHNLRMAFHEGDRSRHTLQVLADGKEIALVKTSGKTLDFQDWDIDAKAVSTLALQAVDLNPNYWIHVTEVEI 308
            L+D    T V+  + +YD RT + GGC    GC  + TRD   K  SRWSCSEKL   +C + Y+FE PQD+  +++                +G+   ++ +SG +  ++ WDI+      L+++A++L+ + WI +TEV I
Sbjct:  608 LVDARKRTAVKKWANAYDDRTSEYGGCDPD-GCKASFTRDRSWKDESRWSCSEKLEDAQCNITYNFEEPQDIVRIKI----------------NGEFKKIITSSGTSSTYETWDINTDETKWLSMEALNLDDDEWISITEVRI 733          
BLAST of mRNA_H-paniculata_contig5409.12850.1 vs. uniprot
Match: A0A6H5J8U9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J8U9_9PHAE)

HSP 1 Score: 80.1 bits (196), Expect = 3.540e-13
Identity = 47/156 (30.13%), Postives = 90/156 (57.69%), Query Frame = 0
Query:  162 SSAGLIDVSAMTLVRMSSPSYDPRTEQEGG---CGVKMGCGPARTRDG--KLKSTSRWSCSEKL--GRGRCVVKYSFETPQDLHNLRMAFHEGDRSRHTLQVLADGKEIALVKT-SGKTLDFQDWDIDAKAVSTLALQAVDLNPNYWIHVTEVEIL 309
            ++A  ++  + T V +++ +YD R  +  G   CG +MGC P    DG  +  + SRWSC+E++    G+C + ++F++PQD+ ++++AF +GD    TL+V  +G +I   ++  G T  F  + I    V T+ +++V ++ + WI + EV  +
Sbjct:  247 NNAEFVEAGSKTTVGVTATAYDDRPGESAGDVGCG-EMGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEISFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVTMESVGIDRDDWISLLEVRFM 399          
BLAST of mRNA_H-paniculata_contig5409.12850.1 vs. uniprot
Match: D8LCQ5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCQ5_ECTSI)

HSP 1 Score: 70.9 bits (172), Expect = 1.220e-11
Identity = 39/119 (32.77%), Postives = 71/119 (59.66%), Query Frame = 0
Query:  196 MGCGPARTRDG--KLKSTSRWSCSEKL--GRGRCVVKYSFETPQDLHNLRMAFHEGDRSRHTLQVLADGKEIALVKT-SGKTLDFQDWDIDAKAVSTLALQAVDLNPNYWIHVTEVEIL 309
            MGC P    DG  +  + SRWSC+E++    G+C + ++F++PQD+ ++++AF +GD    TL+V  +G +I   ++  G T  F  + I    V T+A+++V ++ + WI + EV  +
Sbjct:    1 MGCLPDLAHDGVGEEDTESRWSCAEEIVPDGGQCEITFTFDSPQDITDVQVAFWKGDERTRTLKVKINGDKIGEYESYPGST--FNSFGIQENGVHTVAMESVGIDADDWISLLEVRFM 117          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5409.12850.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7G122_ECTSI2.360e-2334.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4E8_9PHAE1.310e-1633.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J8U9_9PHAE3.540e-1330.13Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCQ5_ECTSI1.220e-1132.77Uncharacterized protein n=2 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR008979Galactose-binding-like domain superfamilyGENE3D2.60.120.260coord: 193..314
e-value: 5.8E-5
score: 25.1
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 7..18
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..6
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..23
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 24..316
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 19..23
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..21
score: 0.79

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5409contigH-paniculata_contig5409:4664..12725 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5409.12850.1mRNA_H-paniculata_contig5409.12850.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5409 2398..12919 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5409.12850.1 ID=prot_H-paniculata_contig5409.12850.1|Name=mRNA_H-paniculata_contig5409.12850.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=317bp
MAKLLRLLVLLRLSIACLSEASSHECSPLGGLCSSETPCCERTHDCFAGN
CDLAVYIPSHGEKCDEKCGHSCSTRGEACVNGICTGPSEDCSSQGEECNV
EKGCCDPSHDCVPLSDAPLPPIWERAGVCKVSKAPSTGDKCDQKNPCRFR
FDACIDGVCKVSSAGLIDVSAMTLVRMSSPSYDPRTEQEGGCGVKMGCGP
ARTRDGKLKSTSRWSCSEKLGRGRCVVKYSFETPQDLHNLRMAFHEGDRS
RHTLQVLADGKEIALVKTSGKTLDFQDWDIDAKAVSTLALQAVDLNPNYW
IHVTEVEILTRNQMPC*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR008979Galactose-bd-like_sf