prot_H-paniculata_contig53823.12812.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig53823.12812.1
Unique Nameprot_H-paniculata_contig53823.12812.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length103
Homology
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A5N6M6A7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M6A7_9ASTR)

HSP 1 Score: 94.4 bits (233), Expect = 2.320e-20
Identity = 40/77 (51.95%), Postives = 55/77 (71.43%), Query Frame = 0
Query:   17 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            ++E+PEG + +DSKWVYK KY P G I+R K+R++ KG++Q+EGIDYH TFAP A + + RCL  I    DW L  +
Sbjct:  245 LEELPEGKHVIDSKWVYKIKYKPNGDIERYKARLIAKGFTQVEGIDYHDTFAPVAKLVTVRCLLSIAVKRDWILHQL 321          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.310e-20
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  232 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 324          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.380e-20
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  437 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 529          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.390e-20
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  501 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 593          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.390e-20
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  645 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 737          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 93.6 bits (231), Expect = 4.440e-20
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  851 MSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 943          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A2N9HWT4_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HWT4_FAGSY)

HSP 1 Score: 90.9 bits (224), Expect = 5.160e-20
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 0
Query:   17 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            ++ +P G   + SKWVYK KY P G ++R K+R+V KGYSQ+EG+DYH TFAP A + + RCL  I  +  W+L  +
Sbjct:  138 LETLPPGKRPIQSKWVYKIKYKPDGTVERYKARLVAKGYSQVEGLDYHETFAPVAKLVTVRCLLAIASIRQWELHQL 214          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 92.4 bits (228), Expect = 1.110e-19
Identity = 39/93 (41.94%), Postives = 60/93 (64.52%), Query Frame = 0
Query:    1 MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+
Sbjct:  165 MCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHL 257          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A5N6M0Y2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M0Y2_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 1.400e-19
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 0
Query:   17 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            ++E+PEG   +DSKWVYK KY P G I+R K+R+V KGY+Q+EG+DYH TFAP A + + R L  I    +W +  +
Sbjct:   90 IEELPEGKRAIDSKWVYKIKYKPNGEIERYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRSLLAIAVKKEWIVHQL 166          
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A2N9EQL3_FAGSY (Integrase catalytic domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9EQL3_FAGSY)

HSP 1 Score: 91.3 bits (225), Expect = 2.780e-19
Identity = 38/85 (44.71%), Postives = 56/85 (65.88%), Query Frame = 0
Query:    9 VSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 93
            + A N   ++ +P G   + SKWVYK KY P G I+R K+R+V KGY+Q+EG+DYH TFAP A + + RCL  +  + +W+L  +
Sbjct:  291 LEANNTWTLETLPPGKRPIPSKWVYKIKYKPDGTIERHKARLVAKGYTQVEGLDYHETFAPVAKLVTVRCLLAVAAIRNWELHQL 375          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6M6A7_9ASTR2.320e-2051.95Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE4.310e-2041.94Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE4.380e-2041.94CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE4.390e-2041.94Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE4.390e-2041.94CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE4.440e-2041.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N9HWT4_FAGSY5.160e-2048.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JP36_9PHAE1.110e-1941.94Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A5N6M0Y2_9ASTR1.400e-1949.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A2N9EQL3_FAGSY2.780e-1944.71Integrase catalytic domain-containing protein n=1 ... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 17..94
e-value: 8.8E-12
score: 45.2
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 21..92
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 21..92

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53823contigH-paniculata_contig53823:22..330 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53823.12812.1mRNA_H-paniculata_contig53823.12812.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig53823 3..339 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig53823.12812.1 ID=prot_H-paniculata_contig53823.12812.1|Name=mRNA_H-paniculata_contig53823.12812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRI
VGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIR
AI*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like