mRNA_H-paniculata_contig53823.12812.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig53823.12812.1
Unique NamemRNA_H-paniculata_contig53823.12812.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A5N6M6A7_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M6A7_9ASTR)

HSP 1 Score: 96.7 bits (239), Expect = 5.060e-21
Identity = 45/96 (46.88%), Postives = 63/96 (65.62%), Query Frame = 1 
Query:    1 KKSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 288
            +K+M  E E L      + ++E+PEG + +DSKWVYK KY P G I+R K+R++ KG++Q+EGIDYH TFAP A + + RCL  I    DW L  +
Sbjct:  227 RKAMQREIEALEQNETWT-LEELPEGKHVIDSKWVYKIKYKPNGDIERYKARLIAKGFTQVEGIDYHDTFAPVAKLVTVRCLLSIAVKRDWILHQL 321
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5JV80_9PHAE (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JV80_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.400e-21
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  230 KAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFFQSKLDH 337
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BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5LDZ0_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDZ0_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.580e-21
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  435 KAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDH 542
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5J594_9PHAE (Integrase catalytic domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J594_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.620e-21
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  499 KAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDH 606
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5KHE8_9PHAE (CCHC-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHE8_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.630e-21
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  643 KAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDH 750
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5K622_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K622_9PHAE)

HSP 1 Score: 95.9 bits (237), Expect = 9.750e-21
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  849 KAMSAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDH 956
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A6H5JP36_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP36_9PHAE)

HSP 1 Score: 94.7 bits (234), Expect = 2.430e-20
Identity = 42/108 (38.89%), Postives = 64/108 (59.26%), Query Frame = 1 
Query:    4 KSMDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIRAI*LGH 327
            K+M +E E L+ A   +   ++PEGCN +D++WV+KWK D  G I +AK+R+V KG+ Q  G+DY  TF+PTA+  S R +  + C  + +L H+          L H
Sbjct:  163 KAMCAEVEGLIRAGTFTLAAKIPEGCNVIDARWVFKWKADETGKIVKAKARLVAKGFKQKHGVDYLETFSPTANAASIRLVVALACKYNLELLHLDIEQAFVQSKLDH 270
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A2N9HWT4_FAGSY (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Fagus sylvatica TaxID=28930 RepID=A0A2N9HWT4_FAGSY)

HSP 1 Score: 90.9 bits (224), Expect = 7.190e-20
Identity = 37/77 (48.05%), Postives = 52/77 (67.53%), Query Frame = 1 
Query:   58 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 288
            ++ +P G   + SKWVYK KY P G ++R K+R+V KGYSQ+EG+DYH TFAP A + + RCL  I  +  W+L  +
Sbjct:  138 LETLPPGKRPIQSKWVYKIKYKPDGTVERYKARLVAKGYSQVEGLDYHETFAPVAKLVTVRCLLAIASIRQWELHQL 214
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A5N6M0Y2_9ASTR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6M0Y2_9ASTR)

HSP 1 Score: 90.9 bits (224), Expect = 1.950e-19
Identity = 38/77 (49.35%), Postives = 53/77 (68.83%), Query Frame = 1 
Query:   58 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 288
            ++E+PEG   +DSKWVYK KY P G I+R K+R+V KGY+Q+EG+DYH TFAP A + + R L  I    +W +  +
Sbjct:   90 IEELPEGKRAIDSKWVYKIKYKPNGEIERYKARLVAKGYTQMEGVDYHDTFAPVAKLVTVRSLLAIAVKKEWIVHQL 166
[Close]
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Match: A0A5N6NJS0_9ASTR (Integrase catalytic domain-containing protein n=1 Tax=Mikania micrantha TaxID=192012 RepID=A0A5N6NJS0_9ASTR)

HSP 1 Score: 91.3 bits (225), Expect = 3.990e-19
Identity = 39/77 (50.65%), Postives = 54/77 (70.13%), Query Frame = 1 
Query:   58 VQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRIVGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHI 288
            +QE+PEG + +DSKWVYK KY P G ++R K+R+V KGY+Q+EG+DYH TFAP A + + R L  I    +W L  +
Sbjct:  333 LQELPEGKHAIDSKWVYKIKYKPDGTVERYKARLVTKGYTQIEGVDYHDTFAPVAKLVTVRTLITIAVKRNWLLHQL 409
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig53823.12812.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5N6M6A7_9ASTR5.060e-2146.88Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5JV80_9PHAE9.400e-2138.89Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A6H5LDZ0_9PHAE9.580e-2138.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5J594_9PHAE9.620e-2138.89Integrase catalytic domain-containing protein n=1 ... [more]
A0A6H5KHE8_9PHAE9.630e-2138.89CCHC-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5K622_9PHAE9.750e-2138.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JP36_9PHAE2.430e-2038.89Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A2N9HWT4_FAGSY7.190e-2048.05Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6M0Y2_9ASTR1.950e-1949.35Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A5N6NJS0_9ASTR3.990e-1950.65Integrase catalytic domain-containing protein n=1 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig53823contigH-paniculata_contig53823:3..339 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score87.4
Seed ortholog evalue4.2e-15
Seed eggNOG ortholog3641.EOY05030
Hectar predicted targeting categoryother localisation
EggNOG free text desc.cysteine-rich RLK (RECEPTOR-like protein kinase) 8
EggNOG OGs37RIF@33090,3GBWZ@35493,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
Exons1
Model size337
Cds size309
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig53823.12812.1prot_H-paniculata_contig53823.12812.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig53823 22..330 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930550.5360727-UTR-H-paniculata_contig53823:2..211622930550.5360727-UTR-H-paniculata_contig53823:2..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53823 3..21 -
1691481344.2222645-UTR-H-paniculata_contig53823:2..211691481344.2222645-UTR-H-paniculata_contig53823:2..21Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53823 3..21 -
1622930550.5805957-UTR-H-paniculata_contig53823:330..3391622930550.5805957-UTR-H-paniculata_contig53823:330..339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53823 331..339 -
1691481344.2396705-UTR-H-paniculata_contig53823:330..3391691481344.2396705-UTR-H-paniculata_contig53823:330..339Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig53823 331..339 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930550.5612738-CDS-H-paniculata_contig53823:21..3301622930550.5612738-CDS-H-paniculata_contig53823:21..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53823 22..330 -
1691481344.2318769-CDS-H-paniculata_contig53823:21..3301691481344.2318769-CDS-H-paniculata_contig53823:21..330Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig53823 22..330 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig53823.12812.1

>prot_H-paniculata_contig53823.12812.1 ID=prot_H-paniculata_contig53823.12812.1|Name=mRNA_H-paniculata_contig53823.12812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=103bp
MDSEFEVLVSAVNLSEVQEVPEGCNFVDSKWVYKWKYDPQGMIDRAKSRI
VGKGYSQLEGIDYHATFAPTASVTSNRCLAVIVCLLDWDLRHIRCRTGIR
AI*
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mRNA from alignment at H-paniculata_contig53823:3..339-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig53823.12812.1 ID=mRNA_H-paniculata_contig53823.12812.1|Name=mRNA_H-paniculata_contig53823.12812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=337bp|location=Sequence derived from alignment at H-paniculata_contig53823:3..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAGAAGTCGATGGATTCAGAGTTTGAGGTACTTGTGTCAGCAGTAAATCT
TTCTGAAGTACAAGAGGTGCCGGAGGGATGCAATTTTGTGGATTCGAAGT
GGGTGTACAAGTGGAAGTATGATCCACAGGGCATGATTGACAGAGCAAAA
TCTAGAATAGTGGGGAAGGGATACAGCCAACTAGAAGGAATCGACTACCA
TGCGACTTTCGCTCCTACAGCGTCGGTAACGTCTAACAGATGTTTGGCAG
TGATTGTGTGTTTGCTTGACTGGGATTTGAGACATATTCGATGTAGAACA
GGCATTCGTGCAATCTGACTTGGACACTGAGATTTAC
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Coding sequence (CDS) from alignment at H-paniculata_contig53823:3..339-

>mRNA_H-paniculata_contig53823.12812.1 ID=mRNA_H-paniculata_contig53823.12812.1|Name=mRNA_H-paniculata_contig53823.12812.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=618bp|location=Sequence derived from alignment at H-paniculata_contig53823:3..339- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGATTCAGAGTTTGAGGTACTTGTGTCAGCAGTAAATCTTTCTGAAGT
ACAAGAGGTGCCGGAGGGATGCAATTTTGTGGATTCGAAGTGGGTGTACA
AGTGGAAGTATGATCCACAGGGCATGATTGACAGAGCAAAATCTAGAATA
GTGGGGAAGGGATACAGCCAACTAGAAGGAATCGACTACCATGCGACTTT
CGCTCCTACAGCGTCGGTAACGTCTAACAGATGTTTGGCAGTGATTGTGT
GTTTGCTTGACTGGGATTTGAGACATATTCGATGTAGAACAGGCATTCGT
GCAATCTGAATGGATTCAGAGTTTGAGGTACTTGTGTCAGCAGTAAATCT
TTCTGAAGTACAAGAGGTGCCGGAGGGATGCAATTTTGTGGATTCGAAGT
GGGTGTACAAGTGGAAGTATGATCCACAGGGCATGATTGACAGAGCAAAA
TCTAGAATAGTGGGGAAGGGATACAGCCAACTAGAAGGAATCGACTACCA
TGCGACTTTCGCTCCTACAGCGTCGGTAACGTCTAACAGATGTTTGGCAG
TGATTGTGTGTTTGCTTGACTGGGATTTGAGACATATTCGATGTAGAACA
GGCATTCGTGCAATCTGA
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