prot_H-paniculata_contig5259.12634.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig5259.12634.1
Unique Nameprot_H-paniculata_contig5259.12634.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length279
Homology
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI)

HSP 1 Score: 171 bits (432), Expect = 3.370e-48
Identity = 149/220 (67.73%), Postives = 168/220 (76.36%), Query Frame = 0
Query:    1 MRTVEFACVAVACVGGANAFVGGGMRPVSV---RSSSTASVRMTA--TVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDENDLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKNGSLVNLLTSS---KPAAA-PVSAPAAPM 211
            M+TV FAC   AC GGA+AFVG  MRP S    R+  ++SVRM A  TVPDLLKQTE+LKLL XXXXXXXXXXXXXXXX   DVEKLLPLVDENDLIGLA+  GP LL +APXXXXXXXXXXXXXXXXXXXXX             G ALV+V+PDDSV  IAI+TF+AFPL+FVLPAV GV GFAL  LKNGSLV+ +TS+   KPAAA PV++  AP+
Sbjct:    1 MKTVAFACAVAACAGGADAFVGS-MRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDFITSTASPKPAAASPVASSXAPV 219          
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 2.580e-18
Identity = 95/192 (49.48%), Postives = 117/192 (60.94%), Query Frame = 0
Query:    1 MRTVEFACVAVACVGGANAF-VGGGMRPVSVRSSSTASVRMTATVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDENDLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKNGSLV 191
            ++ +  A    AC   A+AF V G +RP   R   T +V    +V +LL +TEELKLLS   XXXXXXXXXXXX    D+E  LP +D+ D I L +   P LLAIAP     XXXXXXXXXXXXXXXX AL   A  SV AGLA ++ IPDDS+  IA+Q F+A PL+ + P    VG   L    +G+LV
Sbjct:    2 VKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSK-GSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLV 192          
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: B8LBT9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBT9_THAPS)

HSP 1 Score: 55.1 bits (131), Expect = 1.620e-5
Identity = 72/165 (43.64%), Postives = 93/165 (56.36%), Query Frame = 0
Query:   27 PVSVRSSSTASVRMTATVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDEN----DLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKN 187
            P ++ +S T SV     V + L+ TEE  LLS     XXXXXXXXXX     +EKL+          +++ LA+A+GP +L + P     XXXXXXXXXXXXXXXX       L SV A   +VSVIPDD+V ++A QT     L  V+PA   VG   L  +K+
Sbjct:   30 PSALTTSKTDSVGNNLAVKNFLESTEETGLLSQVANAXXXXXXXXXXITLAKLEKLIKAASAKGVLKEVLILAEAAGPEILPLLPGVVEYXXXXXXXXXXXXXXXXXXXXXXXLASVAASYGVVSVIPDDTVLEVAAQTIAVATLGVVVPAASLVGATVLGKIKS 194          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G0T4_ECTSI3.370e-4867.73Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835Z532_9STRA2.580e-1849.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
B8LBT9_THAPS1.620e-543.64Predicted protein n=1 Tax=Thalassiosira pseudonana... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR009500Protein of unknown function DUF1118PFAMPF06549DUF1118coord: 51..125
e-value: 1.6E-6
score: 28.4
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 20..90
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_H_REGIONSignal peptide H-regioncoord: 6..14
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDESignal Peptidecoord: 1..19
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 146..156
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 113..118
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 183..278
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 157..182
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_N_REGIONSignal peptide N-regioncoord: 1..5
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 91..112
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 119..145
NoneNo IPR availablePHOBIUSSIGNAL_PEPTIDE_C_REGIONSignal peptide C-regioncoord: 15..19
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..19
score: 0.454
NoneNo IPR availableTMHMMTMhelixcoord: 102..124
NoneNo IPR availableTMHMMTMhelixcoord: 7..29
NoneNo IPR availableTMHMMTMhelixcoord: 131..150
NoneNo IPR availableTMHMMTMhelixcoord: 160..182

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig5259contigH-paniculata_contig5259:527..12631 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig5259.12634.1mRNA_H-paniculata_contig5259.12634.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig5259 462..14341 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig5259.12634.1 ID=prot_H-paniculata_contig5259.12634.1|Name=mRNA_H-paniculata_contig5259.12634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp
MRTVEFACVAVACVGGANAFVGGGMRPVSVRSSSTASVRMTATVPDLLKQ
TEELKLLSKASELGLLSKLEKAGLTLKDVEKLLPLVDENDLIGLAQASGP
SLLAIAPAALAAAPNALPLLGAALAIPAEALFIAALGSVGAGLALVSVIP
DDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKNGSLVNLLTSSKPA
AAPVSAPAAPMMSSAPVAAAAPISKPSGGRPAAGGGRPAAAKKAAPAPKA
APKPKPVPKAKPMPVVPKGNLSNIPKAL*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR009500DUF1118