mRNA_H-paniculata_contig5259.12634.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: D7G0T4_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0T4_ECTSI) HSP 1 Score: 171 bits (433), Expect = 4.220e-44 Identity = 149/220 (67.73%), Postives = 168/220 (76.36%), Query Frame = 3
Query: 66 MRTVEFACVAVACVGGANAFVGGGMRPVSV---RSSSTASVRMTA--TVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDENDLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKNGSLVNLLTSS---KPAAA-PVSAPAAPM 698
M+TV FAC AC GGA+AFVG MRP S R+ ++SVRM A TVPDLLKQTE+LKLL XXXXXXXXXXXXXXXX DVEKLLPLVDENDLIGLA+ GP LL +APXXXXXXXXXXXXXXXXXXXXX G ALV+V+PDDSV IAI+TF+AFPL+FVLPAV GV GFAL LKNGSLV+ +TS+ KPAAA PV++ AP+
Sbjct: 1 MKTVAFACAVAACAGGADAFVGS-MRPASSSMRRAGPSSSVRMAADVTVPDLLKQTEKLKLLXXXXXXXXXXXXXXXXXTLKDVEKLLPLVDENDLIGLAKGVGPDLLKVAPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAALVTVLPDDSVSSIAIETFVAFPLLFVLPAVCGVAGFALTSLKNGSLVDFITSTASPKPAAASPVASSXAPV 219
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: A0A835Z532_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z532_9STRA) HSP 1 Score: 91.7 bits (226), Expect = 4.970e-17 Identity = 95/192 (49.48%), Postives = 117/192 (60.94%), Query Frame = 3
Query: 66 MRTVEFACVAVACVGGANAF-VGGGMRPVSVRSSSTASVRMTATVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDENDLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKNGSLV 638
++ + A AC A+AF V G +RP R T +V +V +LL +TEELKLLS XXXXXXXXXXXX D+E LP +D+ D I L + P LLAIAP XXXXXXXXXXXXXXXX AL A SV AGLA ++ IPDDS+ IA+Q F+A PL+ + P VG L +G+LV
Sbjct: 2 VKAIAAAAAIAACATSADAFAVPGSVRPAVARRGMTMAVSK-GSVQELLIKTEELKLLSTASXXXXXXXXXXXXLTLRDLEAALPFLDDIDAIALGKELSPDLLAIAPKALEAXXXXXXXXXXXXXXXXXALLTGAALSVVAGLAAIAAIPDDSIGAIALQAFLAVPLLVLAPGAAVVGAGVLTKANDGTLV 192
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Match: B8LBT9_THAPS (Predicted protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8LBT9_THAPS) HSP 1 Score: 55.1 bits (131), Expect = 8.260e-5 Identity = 72/165 (43.64%), Postives = 93/165 (56.36%), Query Frame = 3
Query: 144 PVSVRSSSTASVRMTATVPDLLKQTEELKLLSXXXXXXXXXXXXXXXXXXXDVEKLLPLVDEN----DLIGLAQASGPSLLAIAPXXXXXXXXXXXXXXXXXXXXXEALFIAALGSVGAGLALVSVIPDDSVPDIAIQTFIAFPLIFVLPAVLGVGGFALNGLKN 626
P ++ +S T SV V + L+ TEE LLS XXXXXXXXXX +EKL+ +++ LA+A+GP +L + P XXXXXXXXXXXXXXXX L SV A +VSVIPDD+V ++A QT L V+PA VG L +K+
Sbjct: 30 PSALTTSKTDSVGNNLAVKNFLESTEETGLLSQVANAXXXXXXXXXXITLAKLEKLIKAASAKGVLKEVLILAEAAGPEILPLLPGVVEYXXXXXXXXXXXXXXXXXXXXXXXLASVAASYGVVSVIPDDTVLEVAAQTIAVATLGVVVPAASLVGATVLGKIKS 194 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig5259.12634.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig5259.12634.1 >prot_H-paniculata_contig5259.12634.1 ID=prot_H-paniculata_contig5259.12634.1|Name=mRNA_H-paniculata_contig5259.12634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=279bp MRTVEFACVAVACVGGANAFVGGGMRPVSVRSSSTASVRMTATVPDLLKQback to top mRNA from alignment at H-paniculata_contig5259:462..14341+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig5259.12634.1 ID=mRNA_H-paniculata_contig5259.12634.1|Name=mRNA_H-paniculata_contig5259.12634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=13880bp|location=Sequence derived from alignment at H-paniculata_contig5259:462..14341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig5259:462..14341+ >mRNA_H-paniculata_contig5259.12634.1 ID=mRNA_H-paniculata_contig5259.12634.1|Name=mRNA_H-paniculata_contig5259.12634.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1674bp|location=Sequence derived from alignment at H-paniculata_contig5259:462..14341+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |