prot_H-paniculata_contig4885.12026.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4885.12026.1
Unique Nameprot_H-paniculata_contig4885.12026.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length309
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Match: D8LG08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG08_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.530e-22
Identity = 57/87 (65.52%), Postives = 65/87 (74.71%), Query Frame = 0 
Query:    1 MEMVRESRARDAKDGVDRNACIVDRNQFFNTQIGVGYQHKTVVRQRTAE-PESNGQRVIDMSVARLKEKRHXXXXXXXXADGGSESD 86
            MEM+RES+AR+ KDGV+R ACIVDRNQFFNTQIG+GYQHKTVVRQRT E P   GQRV+DMSVA  + K+           GG ESD
Sbjct:   48 MEMLRESKAREKKDGVERKACIVDRNQFFNTQIGIGYQHKTVVRQRTVEQPTGAGQRVVDMSVAAARGKK----GKRCARQGGRESD 130
[Close]
BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Match: A0A835Z3W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W9_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 3.970e-8
Identity = 32/71 (45.07%), Postives = 48/71 (67.61%), Query Frame = 0 
Query:    1 MEMVRESRARDAKDGVDRNA-CIVDRNQFFNTQIGVGYQHKTVVRQRTAEPESNGQRVIDMSVARLKEKRH 70
            ME+ R+ RAR+ ++G       IVD+ QF NT++G GYQHKTVVRQR+A   +   +++DM+ AR   ++H
Sbjct:   40 MELTRDLRARELEEGDAAGGNFIVDQTQFRNTEVGKGYQHKTVVRQRSATNAARPMKIVDMTQARAPTEKH 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG08_ECTSI5.530e-2265.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3W9_9STRA3.970e-845.07Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 267..287

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4885contigH-paniculata_contig4885:12034..14482 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4885.12026.1mRNA_H-paniculata_contig4885.12026.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4885 11444..14485 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4885.12026.1 ID=prot_H-paniculata_contig4885.12026.1|Name=mRNA_H-paniculata_contig4885.12026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MEMVRESRARDAKDGVDRNACIVDRNQFFNTQIGVGYQHKTVVRQRTAEP
ESNGQRVIDMSVARLKEKRHRSREREREADGGSESDDGGDGGKTKSSKSG
RRKKSEKRKKGREGDKRSSKKQKKNKKDKRDKKSSRHRESGKSSRRSRHA
KGDSSDDDSGTKKGREGSSSRSRKHKKNSGSKHNGRKHASRGGTDRGDVD
EEMARKSSSCSSSSESSDSGGDSGDALGPSQASDSCGLIRPPQTGGDGGR
TDHGNTMTALDRAKEPLQRLRNLIEEKLRAKARESKAKGVKGEQGVTVEK
QRHKRVDC*
back to top