mRNA_H-paniculata_contig4885.12026.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4885.12026.1
Unique NamemRNA_H-paniculata_contig4885.12026.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Match: D8LG08_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG08_ECTSI)

HSP 1 Score: 105 bits (263), Expect = 3.040e-21
Identity = 58/88 (65.91%), Postives = 66/88 (75.00%), Query Frame = 1 
Query:    1 EMEMVRESRARDAKDGVDRNACIVDRNQFFNTQIGVGYQHKTVVRQRTAE-PESNGQRVIDMSVARLKEKRHXXXXXXXXADGGSESD 261
            EMEM+RES+AR+ KDGV+R ACIVDRNQFFNTQIG+GYQHKTVVRQRT E P   GQRV+DMSVA  + K+           GG ESD
Sbjct:   47 EMEMLRESKAREKKDGVERKACIVDRNQFFNTQIGIGYQHKTVVRQRTVEQPTGAGQRVVDMSVAAARGKK----GKRCARQGGRESD 130
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BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Match: A0A835Z3W9_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3W9_9STRA)

HSP 1 Score: 63.9 bits (154), Expect = 3.730e-8
Identity = 33/72 (45.83%), Postives = 49/72 (68.06%), Query Frame = 1 
Query:    1 EMEMVRESRARDAKDGVDRNA-CIVDRNQFFNTQIGVGYQHKTVVRQRTAEPESNGQRVIDMSVARLKEKRH 213
            EME+ R+ RAR+ ++G       IVD+ QF NT++G GYQHKTVVRQR+A   +   +++DM+ AR   ++H
Sbjct:   39 EMELTRDLRARELEEGDAAGGNFIVDQTQFRNTEVGKGYQHKTVVRQRSATNAARPMKIVDMTQARAPTEKH 110
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4885.12026.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LG08_ECTSI3.040e-2165.91Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3W9_9STRA3.730e-845.83Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4885contigH-paniculata_contig4885:11444..14485 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-21_005040.1
Exons3
Model size1520
Cds size927
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4885.12026.1prot_H-paniculata_contig4885.12026.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4885 12034..14482 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.392018-UTR-H-paniculata_contig4885:11443..120331622930443.392018-UTR-H-paniculata_contig4885:11443..12033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4885 11444..12033 -
1691481294.7089436-UTR-H-paniculata_contig4885:11443..120331691481294.7089436-UTR-H-paniculata_contig4885:11443..12033Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4885 11444..12033 -
1622930443.4609058-UTR-H-paniculata_contig4885:14482..144851622930443.4609058-UTR-H-paniculata_contig4885:14482..14485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4885 14483..14485 -
1691481294.7563107-UTR-H-paniculata_contig4885:14482..144851691481294.7563107-UTR-H-paniculata_contig4885:14482..14485Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4885 14483..14485 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930443.407619-CDS-H-paniculata_contig4885:12033..125881622930443.407619-CDS-H-paniculata_contig4885:12033..12588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 12034..12588 -
1691481294.7232525-CDS-H-paniculata_contig4885:12033..125881691481294.7232525-CDS-H-paniculata_contig4885:12033..12588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 12034..12588 -
1622930443.420919-CDS-H-paniculata_contig4885:13312..135881622930443.420919-CDS-H-paniculata_contig4885:13312..13588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 13313..13588 -
1691481294.7333627-CDS-H-paniculata_contig4885:13312..135881691481294.7333627-CDS-H-paniculata_contig4885:13312..13588Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 13313..13588 -
1622930443.4332187-CDS-H-paniculata_contig4885:14386..144821622930443.4332187-CDS-H-paniculata_contig4885:14386..14482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 14387..14482 -
1691481294.7467203-CDS-H-paniculata_contig4885:14386..144821691481294.7467203-CDS-H-paniculata_contig4885:14386..14482Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4885 14387..14482 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4885.12026.1

>prot_H-paniculata_contig4885.12026.1 ID=prot_H-paniculata_contig4885.12026.1|Name=mRNA_H-paniculata_contig4885.12026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=309bp
MEMVRESRARDAKDGVDRNACIVDRNQFFNTQIGVGYQHKTVVRQRTAEP
ESNGQRVIDMSVARLKEKRHRSREREREADGGSESDDGGDGGKTKSSKSG
RRKKSEKRKKGREGDKRSSKKQKKNKKDKRDKKSSRHRESGKSSRRSRHA
KGDSSDDDSGTKKGREGSSSRSRKHKKNSGSKHNGRKHASRGGTDRGDVD
EEMARKSSSCSSSSESSDSGGDSGDALGPSQASDSCGLIRPPQTGGDGGR
TDHGNTMTALDRAKEPLQRLRNLIEEKLRAKARESKAKGVKGEQGVTVEK
QRHKRVDC*
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mRNA from alignment at H-paniculata_contig4885:11444..14485-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4885.12026.1 ID=mRNA_H-paniculata_contig4885.12026.1|Name=mRNA_H-paniculata_contig4885.12026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3042bp|location=Sequence derived from alignment at H-paniculata_contig4885:11444..14485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GAAATGGAGATGGTGCGCGAAAGCAGGGCGAGGGATGCAAAGGACGGGGT
TGACAGGAACGCGTGTATAGTGGACCGTAACCAGTTCTTCAACACCCAGG
TATGCGATGTGCTGGGGAATGTCATGTTCAATATAGATCGTTTCACCAAG
CAGCATAGTACCCGTAGTTTCACCTGGCTGATATTGTGGAATGGTCCATT
TAAGGGATACTTCTACGAGTAGTCTTTAAGATACACTTTGGGAATACTCC
AATAAGGTCCGAGAATGTTCTCAAAGGGTTTGGGAATGTTCTCAAAGATA
TGGGAACTCTCATAGGTAGTCGGGATGGATAATCGGGTGATATTCCCGGG
AGATAGGCAAGGCTTCCTGTATGCCCTGTGCTCCTCCTCATGTTTCACTC
TCCCTTCTTCATCCATTTCTTCACCCATTCCCTTGGGTTAATTGTAATAG
AGACGATTTGAACCATCTACGCCATTCAGCATTCTGTCTTGCAGCAGTTT
TGCTTTCCATACAACGGATTCATCGAATATATCAGGCGTTCTTTTAGAGA
CCACCGAAGATCTTCCACTGGCAATGGTCCCGAAATGTTTCGTCAACCCT
CCCTCATGCATCACACCAGAGTGAGACTGATCAGATAGTGCTGCGGTGGG
AGAAAACATGCGTCCACTTGCATGTTCACAAATTCCCGTAGGAGAGGCAA
CGACATCACTGCTCTTGATTTGCTGTTTTTCATAAATTGTAGGCAGAGCT
GTGTGCGTGTATATCTGACAATGGTTGCGGTTGATTCGAGCTTTTGGCAA
GCACCTCGCGAAAATGTGTACGATATCCATACCTTTCATTTCGAGGCGAA
AAAAAGGACGGGCTCGCACCCTTTTCTGCCGTGTTCCCACACGTCAGATC
GGCGTCGGCTATCAACACAAAACCGTAGTGAGGCAAAGGACTGCAGAGCC
GGAGAGCAACGGCCAACGAGTCATAGACATGTCCGTGGCTCGCTTGAAGG
AGAAACGGCACCGTAGTCGAGAAAGAGAACGGGAAGCCGATGGAGGAAGC
GAGAGTGATGATGGGGGAGACGGAGGAAAGACGAAGAGCAGCAAGTCGGG
GAGGCGAAAGAAGTCAGAGAAGAGGAAAAAGGGGAGGGAGGGTGACAAGC
GCTCATCCAAAAAACAAAAAAAGGTGTTTTGGGATTGTGTCCTGGGAAAG
TCAGTTCCCAAACGTTGTGCTTAGGAAAGGAGGAATATGCAATGTTCGAT
GTTCCCAGAAGTCGGGTAACTCATCAAGGCTCTGTCCGTTCAGTGTCTCC
AGGCTGCTGTAGTATGCATCGAATTATTTTTTCGAGGTCTCGGTTGGACT
ATACGTGCTTGGAGATTTCTCGTCACTCGGTTGATCTCGTGAACACTCGC
GTCGTTACATGTTGTGTATTTGATACCGCGTGGGAGAGCATGATGTCTGT
CGTGACGCCTTTGTTTTGCGTTCGTTTTTTTCTTGTTTGTGCTTTCTCAG
GATACATCCTATGGTCATCAGCTAGGCTCTCTCCACGATTTCACGACAAT
ACCTTTGTCCTACACTAGACATTGAGAACGGCGGGTTGCGCGCACCGCTT
GCATCCAGCTCCGATACACCGATATAGCACTATTTTCCCCACGTAAACGA
AAACTCGATTGTGTGTTGGTACTGGAAAGTGGAGAAATTCACAAAACCCT
CTTGTGTTCGCAGTGAACTGGGGGTTTCAGGAGCGCAAAGGTGGACCCCT
TCAAGAGTGCTTCGATACACAGTTCACGCGCTGCGCATCGTAGTCTTTGG
CAGGAATACTGAATATTCGTGCACATCATGTTGCCAACCTTGACATGCGT
TATGTTCTTGCCGTGTGCTGGTGTTTTGTTCGCTCCTCGTACATCAGAAC
AAAAAGGATAAGCGAGATAAGAAAAGCAGTCGCCACCGAGAGAGTGGAAA
ATCCAGCCGGCGTAGCCGACATGCCAAAGGTGACTCGTCGGACGACGACA
GCGGGACAAAGAAAGGAAGGGAAGGATCTTCTTCTCGCTCGCGAAAACAC
AAGAAAAACAGCGGCAGCAAACACAACGGGAGAAAACACGCTTCGAGGGG
AGGGACGGATAGGGGAGATGTCGATGAAGAAATGGCACGAAAATCGTCCT
CGTGTTCTTCCTCGAGCGAGTCATCAGACTCCGGCGGCGACAGCGGCGAC
GCCCTAGGTCCTAGTCAGGCGTCAGACTCATGCGGTCTTATTCGTCCTCC
GCAGACCGGGGGTGACGGCGGCAGGACAGATCATGGTAATACTATGACAG
CTTTGGACAGAGCGAAAGAGCCGTTGCAGCGACTGAGGAACTTAATTGAG
GAAAAGCTGAGGGCGAAGGCGCGTGAAAGCAAGGCTAAGGGCGTCAAGGG
GGAGCAGGGAGTGACTGTAGAAAAACAGCGACATAAAAGGGTTGATTGTT
AGGCTGGGGGCTTTCCCCTCCTCCGTCATGGTTTGCTTCCCTCAAGTGAT
TATGACAGACTGAATGAATCTGTGACGGGCGAGCCAAAAACACGTCTAGA
TTTTCCGAAAAGAAATAAGGGAGCGGTGCTTATGATATGAAATAATACGA
GTGACGGGGAGCACGCAGGCATGTCTCATAGGCGATCTATTTTTATCCTC
AAGTTTGATTGTATGCTGGGCATATATATTTGAGACTCTACGGTATAGTT
GTGCGTAGCTCGTCTGCATTCATAATTCGCTTTATTATTAGTGATGGGCT
GAGGGAAATGGGAGACAGTGAGATGGTCCGATATGATGCGAACCATGTCA
GGTTTGTCAAGAGAATTTTCGCGTACGATCAAACATCGTCTTGCTGTCGA
TTTGGTCACTTCCCTGTGGTATTACGTTTTTGGTCCTTCATTTTGTGCTG
ACTTTCGTTTGTCTGTGCGCTGTAGACACAACAGTGTTTTGGGATGACTA
ATGATCTGTACAAAAATCCATGAAATTTCTTGGGCTGTGTGGATTTTTTC
CGAGAACGCATCGGGCCTGTCTTTTTAAAGACACTTGTGTCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4885:11444..14485-

>mRNA_H-paniculata_contig4885.12026.1 ID=mRNA_H-paniculata_contig4885.12026.1|Name=mRNA_H-paniculata_contig4885.12026.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1854bp|location=Sequence derived from alignment at H-paniculata_contig4885:11444..14485- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGGAGATGGTGCGCGAAAGCAGGGCGAGGGATGCAAAGGACGGGGTTGA
CAGGAACGCGTGTATAGTGGACCGTAACCAGTTCTTCAACACCCAGATGG
AGATGGTGCGCGAAAGCAGGGCGAGGGATGCAAAGGACGGGGTTGACAGG
AACGCGTGTATAGTGGACCGTAACCAGTTCTTCAACACCCAGATCGGCGT
CGGCTATCAACACAAAACCGTAGTGAGGCAAAGGACTGCAGAGCCGGAGA
GCAACGGCCAACGAGTCATAGACATGTCCGTGGCTCGCTTGAAGGAGAAA
CGGCACCGTAGTCGAGAAAGAGAACGGGAAGCCGATGGAGGAAGCGAGAG
TGATGATGGGGGAGACGGAGGAAAGACGAAGAGCAGCAAGTCGGGGAGGC
GAAAGAAGTCAGAGAAGAGGAAAAAGGGGAGGGAGGGTGACAAGCGCTCA
TCCAAAAAACAAAAAAAGATCGGCGTCGGCTATCAACACAAAACCGTAGT
GAGGCAAAGGACTGCAGAGCCGGAGAGCAACGGCCAACGAGTCATAGACA
TGTCCGTGGCTCGCTTGAAGGAGAAACGGCACCGTAGTCGAGAAAGAGAA
CGGGAAGCCGATGGAGGAAGCGAGAGTGATGATGGGGGAGACGGAGGAAA
GACGAAGAGCAGCAAGTCGGGGAGGCGAAAGAAGTCAGAGAAGAGGAAAA
AGGGGAGGGAGGGTGACAAGCGCTCATCCAAAAAACAAAAAAAGAACAAA
AAGGATAAGCGAGATAAGAAAAGCAGTCGCCACCGAGAGAGTGGAAAATC
CAGCCGGCGTAGCCGACATGCCAAAGGTGACTCGTCGGACGACGACAGCG
GGACAAAGAAAGGAAGGGAAGGATCTTCTTCTCGCTCGCGAAAACACAAG
AAAAACAGCGGCAGCAAACACAACGGGAGAAAACACGCTTCGAGGGGAGG
GACGGATAGGGGAGATGTCGATGAAGAAATGGCACGAAAATCGTCCTCGT
GTTCTTCCTCGAGCGAGTCATCAGACTCCGGCGGCGACAGCGGCGACGCC
CTAGGTCCTAGTCAGGCGTCAGACTCATGCGGTCTTATTCGTCCTCCGCA
GACCGGGGGTGACGGCGGCAGGACAGATCATGGTAATACTATGACAGCTT
TGGACAGAGCGAAAGAGCCGTTGCAGCGACTGAGGAACTTAATTGAGGAA
AAGCTGAGGGCGAAGGCGCGTGAAAGCAAGGCTAAGGGCGTCAAGGGGGA
GCAGGGAGTGACTGTAGAAAAACAGCGACATAAAAGGGTTGATTGTTAGA
ACAAAAAGGATAAGCGAGATAAGAAAAGCAGTCGCCACCGAGAGAGTGGA
AAATCCAGCCGGCGTAGCCGACATGCCAAAGGTGACTCGTCGGACGACGA
CAGCGGGACAAAGAAAGGAAGGGAAGGATCTTCTTCTCGCTCGCGAAAAC
ACAAGAAAAACAGCGGCAGCAAACACAACGGGAGAAAACACGCTTCGAGG
GGAGGGACGGATAGGGGAGATGTCGATGAAGAAATGGCACGAAAATCGTC
CTCGTGTTCTTCCTCGAGCGAGTCATCAGACTCCGGCGGCGACAGCGGCG
ACGCCCTAGGTCCTAGTCAGGCGTCAGACTCATGCGGTCTTATTCGTCCT
CCGCAGACCGGGGGTGACGGCGGCAGGACAGATCATGGTAATACTATGAC
AGCTTTGGACAGAGCGAAAGAGCCGTTGCAGCGACTGAGGAACTTAATTG
AGGAAAAGCTGAGGGCGAAGGCGCGTGAAAGCAAGGCTAAGGGCGTCAAG
GGGGAGCAGGGAGTGACTGTAGAAAAACAGCGACATAAAAGGGTTGATTG
TTAG
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