prot_H-paniculata_contig4552.11421.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4552.11421.1
Unique Nameprot_H-paniculata_contig4552.11421.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length140
Homology
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 114 bits (284), Expect = 1.300e-26
Identity = 54/136 (39.71%), Postives = 89/136 (65.44%), Query Frame = 0
Query:    5 GVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCDDM 140
            GV+E++ RP D++++ +K  +K K   DG+VEKY+ R+VAQGF Q+EG++Y + + P   + S R+LLA AA  D E+   D + AF+  +++EE+Y+++P   +  + AV +L KA+YGL QA R    K   ++
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAEL 1160          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A401H123_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H123_9APHY)

HSP 1 Score: 108 bits (271), Expect = 7.210e-25
Identity = 51/131 (38.93%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            +++K+ RP +++++  K  +K K   DG++EKY+ R+VA+GF Q+EG+++ + + P     S R LLA AA  D E+   D + AF+  D+DEE+Y+++P   +  +  + KLNKA+YGL QAGR    K 
Sbjct:  634 LYDKVERPRNRKVIDCKWVFKIKRGLDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPSGFRRSNSLIWKLNKALYGLKQAGREWYKKI 764          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2I0I0U1_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0I0U1_PUNGR)

HSP 1 Score: 103 bits (256), Expect = 1.920e-24
Identity = 56/128 (43.75%), Postives = 75/128 (58.59%), Query Frame = 0
Query:    4 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGR 130
            NG W     P  KR +  K  YK K   DG VE+Y+ R+VA+GF Q+EGV++ + + P    V+ R LLA A AK  E+   D   AF+  D+DEEVY+ +P G     SG V +L K++YGL QA R
Sbjct:   11 NGTWTIEYLPPGKRPIDCKWVYKIKRRADGSVERYKARLVAKGFTQVEGVDFNETFAPVAKLVTVRCLLAVAVAKGWEIHQMDVNNAFLHGDLDEEVYMRLPPGYSSQRSGVVCRLRKSLYGLRQASR 138          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A401H317_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401H317_9APHY)

HSP 1 Score: 107 bits (267), Expect = 2.490e-24
Identity = 51/131 (38.93%), Postives = 84/131 (64.12%), Query Frame = 0
Query:    6 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            +++++ RP +++++  K  +K K   DG++EKY+ R+VA+GF Q+EG+++ + + P     S R LLA AA  D E+   D + AF+  D+DEE+Y+++P   +  +  V KLNKA+YGL QAGR    K 
Sbjct:  898 LYDEVERPQNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFRRSNSLVWKLNKALYGLKQAGREWYKKI 1028          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 107 bits (266), Expect = 3.410e-24
Identity = 51/133 (38.35%), Postives = 87/133 (65.41%), Query Frame = 0
Query:    4 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            N  WE +  P DKR + +K  +K K   DG++++++ R+VA+GF QIEGV+Y++ Y PT    + ++LL+ + ++  ++  FD + AF+  +++EEVY+++P  ++  +  V KL KA+YGL QA R  N KF
Sbjct:  664 NDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A401G4V0_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Sparassis crispa TaxID=139825 RepID=A0A401G4V0_9APHY)

HSP 1 Score: 107 bits (266), Expect = 3.480e-24
Identity = 51/131 (38.93%), Postives = 83/131 (63.36%), Query Frame = 0
Query:    6 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            +++++ RP +++++  K  +K K   DG++EKY+ R+VA+GF Q+EG+++ + + P     S R LLA AA  D E+   D + AF+  D+DEE+Y+++P      +  V KLNKA+YGL QAGR    K 
Sbjct:  957 LYDEVERPRNRKVIDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFASVRTLLALAAKLDLEIHQMDVKSAFLNGDLDEEIYMKVPPGFHRSNSLVWKLNKALYGLKQAGREWYKKI 1087          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 106 bits (264), Expect = 6.260e-24
Identity = 51/136 (37.50%), Postives = 84/136 (61.76%), Query Frame = 0
Query:    1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            ++ N  W K   PT ++ +  KI +K+K   DGKV +Y+ R+V +GF Q  G++Y + Y P     S R L + AA +D E+  FD + AF+  ++DEE+++++P R+   +G V KL K++YGL Q+ R+ N +F
Sbjct:  591 LIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQWNKRF 725          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A401GM49_9APHY (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Sparassis crispa TaxID=139825 RepID=A0A401GM49_9APHY)

HSP 1 Score: 105 bits (262), Expect = 1.190e-23
Identity = 50/132 (37.88%), Postives = 83/132 (62.88%), Query Frame = 0
Query:    6 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFC 137
            +++++ RP ++++V  K  +K K   DG++EKY+ R+VA+GF Q+EG+++ + + P     S R LLA  A  D E+   D + AF+  D+DEE+Y+ IP   +  +  + +LNKA+YGL QAG +   K C
Sbjct:  909 LYDEVERPRNRKVVDCKWVFKIKRGPDGEIEKYKARLVAKGFTQVEGLDFNETFAPVAKFTSIRTLLALTAKLDLEIHQMDVKSAFLNGDLDEEIYMNIPPSFRKDNKLIWRLNKALYGLKQAGHKWYKKIC 1040          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2K3JLR7_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3JLR7_TRIPR)

HSP 1 Score: 97.8 bits (242), Expect = 1.950e-23
Identity = 51/127 (40.16%), Postives = 76/127 (59.84%), Query Frame = 0
Query:    3 DNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQ-HFSGAVGKLNKAIYGLAQA 128
            DN  W+ ++ P  K++V  +  YK K    G+VEKY+ R+VA+GF QIEG ++ + + P     + R LL+ A AK  EL   D   AF+  D++EEVY+++P   Q    G V +L K++YGL QA
Sbjct:   10 DNKTWDVMLPPVGKKIVGCRWVYKVKYKASGEVEKYKARLVAKGFTQIEGEDFNETFAPVAKMTTVRCLLSVAVAKGWELHQMDVSNAFLHGDLEEEVYMQVPDGYQVPKEGMVCRLRKSLYGLKQA 136          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: UPI0008494023 (uncharacterized mitochondrial protein AtMg00810 n=1 Tax=Theobroma cacao TaxID=3641 RepID=UPI0008494023)

HSP 1 Score: 103 bits (257), Expect = 2.290e-23
Identity = 56/140 (40.00%), Postives = 81/140 (57.86%), Query Frame = 0
Query:    3 DNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP------GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 136
            DNG W  +  P++   V  K  YK K++ DGKVE+Y+ R+VA+G+ QIEG +Y K ++P     + RM  A AA ++  L   D   AF+  ++ EEVY+E+P      G     S  V KL+K++YGL QA R  N+K 
Sbjct:   10 DNGTWSIVQLPSNCHAVGCKWVYKVKLNADGKVERYKARLVAKGYNQIEGFDYQKTFSPVVRQTTVRMFFALAATQNWRLSQLDINNAFLNGELTEEVYMELPQGYTIKGEYPTSSRLVCKLHKSLYGLKQASRAWNSKL 149          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.300e-2639.71Integrase catalytic domain-containing protein (Fra... [more]
A0A401H123_9APHY7.210e-2538.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A2I0I0U1_PUNGR1.920e-2443.75Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A401H317_9APHY2.490e-2438.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K725_LASNI3.410e-2438.35Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A401G4V0_9APHY3.480e-2438.93Retrovirus-related Pol polyprotein from transposon... [more]
A0A0J7K690_LASNI6.260e-2437.50Retrovirus-related pol polyprotein from transposon... [more]
A0A401GM49_9APHY1.190e-2337.88Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3JLR7_TRIPR1.950e-2340.16Retrovirus-related Pol polyprotein from transposon... [more]
UPI00084940232.290e-2340.00uncharacterized mitochondrial protein AtMg00810 n=... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 6..136
e-value: 8.1E-25
score: 87.9
NoneNo IPR availablePANTHERPTHR11439:SF287coord: 7..134
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 7..134

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4552contigH-paniculata_contig4552:13120..13539 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4552.11421.1mRNA_H-paniculata_contig4552.11421.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4552 13120..13539 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4552.11421.1 ID=prot_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQI
EGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEV
YIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCDDM
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like