mRNA_H-paniculata_contig4552.11421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4552.11421.1
Unique NamemRNA_H-paniculata_contig4552.11421.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK)

HSP 1 Score: 114 bits (284), Expect = 1.300e-26
Identity = 54/136 (39.71%), Postives = 89/136 (65.44%), Query Frame = 1
Query:   13 GVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCDDM 420
            GV+E++ RP D++++ +K  +K K   DG+VEKY+ R+VAQGF Q+EG++Y + + P   + S R+LLA AA  D E+   D + AF+  +++EE+Y+++P   +  + AV +L KA+YGL QA R    K   ++
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAEL 1160          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI)

HSP 1 Score: 107 bits (266), Expect = 3.410e-24
Identity = 51/133 (38.35%), Postives = 87/133 (65.41%), Query Frame = 1
Query:   10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
            N  WE +  P DKR + +K  +K K   DG++++++ R+VA+GF QIEGV+Y++ Y PT    + ++LL+ + ++  ++  FD + AF+  +++EEVY+++P  ++  +  V KL KA+YGL QA R  N KF
Sbjct:  664 NDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI)

HSP 1 Score: 106 bits (264), Expect = 6.260e-24
Identity = 51/136 (37.50%), Postives = 84/136 (61.76%), Query Frame = 1
Query:    1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
            ++ N  W K   PT ++ +  KI +K+K   DGKV +Y+ R+V +GF Q  G++Y + Y P     S R L + AA +D E+  FD + AF+  ++DEE+++++P R+   +G V KL K++YGL Q+ R+ N +F
Sbjct:  591 LIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQWNKRF 725          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2Z7CXQ0_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CXQ0_9LAMI)

HSP 1 Score: 98.6 bits (244), Expect = 5.490e-23
Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 1
Query:    1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
            ++ N  WE +  PT  R +  K  YK K + DG +++Y+ R+VA+G+ QIEG +Y + ++PT    +   LLA A++++  L  FD +  F+  D+DEEVY++IP G  +H    V +L  ++YGL QA R    KF
Sbjct:    8 LIQNKSWEIVSLPTGHRPIGCKWVYKIKYNSDGSIDRYKVRLVAKGYMQIEGTDYFETFSPTAKLTTVCCLLAIASSRNWFLSHFDVQNTFLHGDLDEEVYMDIPLGLYRHGENMVCRLKISLYGLKQASRNWFAKF 144          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1R3IX18_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3IX18_COCAP)

HSP 1 Score: 102 bits (255), Expect = 1.040e-22
Identity = 56/138 (40.58%), Postives = 84/138 (60.87%), Query Frame = 1
Query:    7 DNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGA----VGKLNKAIYGLAQAGRRLNTKF 408
            +NG W+ +  P DKR + +K  YK K   +G++E+Y+ R+VA+GF QIEGV++ + + P    V+ R LLA AA +  E+   D    F+  D++EEV+++IP   Q F+ A    V KL K++YGL QA R    KF
Sbjct:  773 ENGTWDLVPLPQDKRAIDSKWVYKVKFKPNGEIERYKARLVAKGFTQIEGVDFHETFAPVAKLVTVRCLLAIAAKRRWEVHQLDVNNVFLHGDLEEEVFMKIP---QGFAKAGETRVCKLKKSLYGLRQASRNWYHKF 907          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2I0IH07_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IH07_PUNGR)

HSP 1 Score: 100 bits (250), Expect = 1.670e-22
Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 1
Query:   10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCD 414
            NG W     P  K+ V  K  YK K   DG VE+Y+  +VA+GF Q+EGV++TK + P    V+ R  LA A  K  E+   D   AF+   + EEVY+ +P G +   SG V +L+K+IYGL QA R   +K  D
Sbjct:   11 NGTWTLSTLPYGKKPVDCKWVYKVKRHADGSVERYKAHLVAKGFTQVEGVDFTKTFAPVAKLVTVRCFLAVAVVKKWEIHQMDVHNAFLHGHLHEEVYMSLPPGLLATSSGQVCRLHKSIYGLRQASRNWFSKLAD 146          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI)

HSP 1 Score: 100 bits (250), Expect = 4.310e-22
Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 1
Query:   10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
            N  W+ +  P +K+ +  K  YK K + DG +E+Y+ R+VAQGF QIEG++Y + ++P     S R  LA A AK  EL   D   AF+  D++EEVY+++P G        V KL K++YGL QA R+   K 
Sbjct:  110 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKL 243          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR)

HSP 1 Score: 100 bits (249), Expect = 6.400e-22
Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query:   16 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
            +++++ RP D+++V  K  ++ K   DG++EKY+ R+VA+GF Q+EGV+YT  + P     S R LLA AA  D E+   D + AF+  ++DEE+++  P   Q     V +L KA+YGL QA R    K 
Sbjct:  313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKI 443          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: UPI000CE26BD7 (uncharacterized protein LOC111985884 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE26BD7)

HSP 1 Score: 100 bits (249), Expect = 6.430e-22
Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 1
Query:    1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSG-AVGKLNKAIYGLAQAGRRLNTKFC 411
            ++ N  W     P++++ +  K  Y+ K   DG VE+Y+ R+VA+GF Q EG+++T  ++P     + + LLA ++ K   L   D   AF+  D+ EEVY+++P       G  V KLNK++YGL QA R+ N KFC
Sbjct:  650 LVSNHTWTLTPLPSNEKAIGCKWIYRVKYKADGSVERYKARLVAKGFTQQEGLDFTDTFSPVAKLTTVKTLLAISSVKGWHLVQLDVNNAFLNGDLHEEVYMQLPQGFHSKGGNVVCKLNKSLYGLKQASRQCNAKFC 787          
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1U8BCN7_NELNU (uncharacterized protein LOC104609701 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8BCN7_NELNU)

HSP 1 Score: 100 bits (248), Expect = 8.890e-22
Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query:   10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFC 411
            N  WE +  P  K+ + +K  YK K   DG ++ Y+ R+VA+G+ QIEGV+Y   ++P    V+ R+ LA A AK+  L   D   AF+   +DEEV+I+ P G  +     V  L +++YGL QA R+ N KFC
Sbjct:  596 NNTWELVPLPPKKKAIGSKWVYKVKYLLDGTIDSYKARLVAKGYHQIEGVDYNDSFSPVAKVVTVRIFLAIAIAKNWALHQLDINNAFLHGYLDEEVFIQPPQGYTKAKPHEVSLLKRSLYGLKQASRQWNVKFC 730          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A0C2WN23_AMAMK1.300e-2639.71Integrase catalytic domain-containing protein (Fra... [more]
A0A0J7K725_LASNI3.410e-2438.35Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=677... [more]
A0A0J7K690_LASNI6.260e-2437.50Retrovirus-related pol polyprotein from transposon... [more]
A0A2Z7CXQ0_9LAMI5.490e-2337.96Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A1R3IX18_COCAP1.040e-2240.58Integrase, catalytic core n=1 Tax=Corchorus capsul... [more]
A0A2I0IH07_PUNGR1.670e-2241.18Reverse transcriptase Ty1/copia-type domain-contai... [more]
A0A438GNV2_VITVI4.310e-2240.30Retrovirus-related Pol polyprotein from transposon... [more]
A0A1C7MSU6_GRIFR6.400e-2238.93Retrovirus-related Pol polyprotein from transposon... [more]
UPI000CE26BD76.430e-2236.96uncharacterized protein LOC111985884 n=1 Tax=Querc... [more]
A0A1U8BCN7_NELNU8.890e-2239.26uncharacterized protein LOC104609701 n=1 Tax=Nelum... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4552contigH-paniculata_contig4552:13120..13539 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score101.7
Seed ortholog evalue2.9e-19
Seed eggNOG ortholog3827.XP_004509218.1
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Reverse transcriptase (RNA-dependent DNA polymerase)
EggNOG OGs37RIF@33090,3GBWZ@35493,4JT11@91835,COG2801@1,KOG0017@2759
COG Functional cat.L
Best tax levelfabids
Best eggNOG OGNA|NA|NA
Exons1
Model size420
Cds size420
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930363.8270006-CDS-H-paniculata_contig4552:13119..135391622930363.8270006-CDS-H-paniculata_contig4552:13119..13539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4552 13120..13539 +
1691481258.6203804-CDS-H-paniculata_contig4552:13119..135391691481258.6203804-CDS-H-paniculata_contig4552:13119..13539Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4552 13120..13539 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4552.11421.1prot_H-paniculata_contig4552.11421.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4552 13120..13539 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4552.11421.1

>prot_H-paniculata_contig4552.11421.1 ID=prot_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp
MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQI
EGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEV
YIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCDDM
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mRNA from alignment at H-paniculata_contig4552:13120..13539+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4552.11421.1 ID=mRNA_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4552:13120..13539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACAACGGAGTATGGGAGAAGATAGTTCGACCAACGGACAAACG TTTGGTGCGAACGAAGATATTTTACAAACGCAAGATCAGCAAGGACGGCA AGGTGGAGAAGTACAGATGTAGAATTGTCGCCCAGGGCTTCCGGCAGATC GAAGGGGTAAATTACACCAAGAAGTACACACCTACCCCGGCGACAGTGTC CACCCGAATGCTCTTGGCGACCGCAGCCGCGAAGGATGGAGAGCTGCGGC CTTTCGATGCAGAACCGGCGTTTATGAAGGCGGACATTGACGAGGAGGTG TACATCGAGATCCCCGGAAGGATTCAACATTTTTCGGGAGCAGTGGGTAA GCTGAACAAGGCAATTTACGGGCTCGCTCAGGCGGGGCGACGCTTGAACA CCAAGTTCTGCGATGACATG
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Coding sequence (CDS) from alignment at H-paniculata_contig4552:13120..13539+

>mRNA_H-paniculata_contig4552.11421.1 ID=mRNA_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig4552:13120..13539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGATGGACAACGGAGTATGGGAGAAGATAGTTCGACCAACGGACAAACG
TTTGGTGCGAACGAAGATATTTTACAAACGCAAGATCAGCAAGGACGGCA
AGGTGGAGAAGTACAGATGTAGAATTGTCGCCCAGGGCTTCCGGCAGATC
GAAGGGGTAAATTACACCAAGAAGTACACACCTACCCCGGCGACAGTGTC
CACCCGAATGCTCTTGGCGACCGCAGCCGCGAAGGATGGAGAGCTGCGGC
CTTTCGATGCAGAACCGGCGTTTATGAAGGCGGACATTGACGAGGAGGTG
TACATCGAGATCCCCGGAAGGATTCAACATTTTTCGGGAGCAGTGGGTAA
GCTGAACAAGGCAATTTACGGGCTCGCTCAGGCGGGGCGACGCTTGAACA
CCAAGTTCTGCGATGACATGATGATGGACAACGGAGTATGGGAGAAGATA
GTTCGACCAACGGACAAACGTTTGGTGCGAACGAAGATATTTTACAAACG
CAAGATCAGCAAGGACGGCAAGGTGGAGAAGTACAGATGTAGAATTGTCG
CCCAGGGCTTCCGGCAGATCGAAGGGGTAAATTACACCAAGAAGTACACA
CCTACCCCGGCGACAGTGTCCACCCGAATGCTCTTGGCGACCGCAGCCGC
GAAGGATGGAGAGCTGCGGCCTTTCGATGCAGAACCGGCGTTTATGAAGG
CGGACATTGACGAGGAGGTGTACATCGAGATCCCCGGAAGGATTCAACAT
TTTTCGGGAGCAGTGGGTAAGCTGAACAAGGCAATTTACGGGCTCGCTCA
GGCGGGGCGACGCTTGAACACCAAGTTCTGCGATGACATG
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