mRNA_H-paniculata_contig4552.11421.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0C2WN23_AMAMK (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Amanita muscaria (strain Koide BX008) TaxID=946122 RepID=A0A0C2WN23_AMAMK) HSP 1 Score: 114 bits (284), Expect = 1.300e-26 Identity = 54/136 (39.71%), Postives = 89/136 (65.44%), Query Frame = 1
Query: 13 GVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCDDM 420
GV+E++ RP D++++ +K +K K DG+VEKY+ R+VAQGF Q+EG++Y + + P + S R+LLA AA D E+ D + AF+ +++EE+Y+++P + + AV +L KA+YGL QA R K ++
Sbjct: 1025 GVFEEVPRPRDRKIIGSKWVFKTKTGPDGQVEKYKARLVAQGFSQVEGIDYNETFAPVTKSNSIRLLLALAARHDWEIHQMDVKSAFLNGELEEEIYMKVPPGHKASADAVWRLKKALYGLKQASREWYKKLSAEL 1160
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K725_LASNI (Gag-pol polyprotein n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K725_LASNI) HSP 1 Score: 107 bits (266), Expect = 3.410e-24 Identity = 51/133 (38.35%), Postives = 87/133 (65.41%), Query Frame = 1
Query: 10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
N WE + P DKR + +K +K K DG++++++ R+VA+GF QIEGV+Y++ Y PT + ++LL+ + ++ ++ FD + AF+ +++EEVY+++P ++ + V KL KA+YGL QA R N KF
Sbjct: 664 NDTWELVPLPPDKRSISSKWVFKVKRYPDGRIQRHKARLVARGFAQIEGVDYSETYAPTTRYDTIQVLLSLSVSRGLKISQFDVKTAFLHGELEEEVYMDLPDEVKESTNRVCKLKKALYGLKQAPRCWNRKF 796
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A0J7K690_LASNI (Retrovirus-related pol polyprotein from transposon tnt 1-94 (Fragment) n=1 Tax=Lasius niger TaxID=67767 RepID=A0A0J7K690_LASNI) HSP 1 Score: 106 bits (264), Expect = 6.260e-24 Identity = 51/136 (37.50%), Postives = 84/136 (61.76%), Query Frame = 1
Query: 1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
++ N W K PT ++ + KI +K+K DGKV +Y+ R+V +GF Q G++Y + Y P S R L + AA +D E+ FD + AF+ ++DEE+++++P R+ +G V KL K++YGL Q+ R+ N +F
Sbjct: 591 LIKNNTWTKTKLPTGRKAITAKIIFKKKRDADGKVHRYKARLVVRGFSQRPGIDYNETYAPVIRYESIRFLFSLAAKEDFEIAQFDIKTAFLNGELDEEIFMQLPTRVTD-AGNVVKLQKSLYGLKQSPRQWNKRF 725
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2Z7CXQ0_9LAMI (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Dorcoceras hygrometricum TaxID=472368 RepID=A0A2Z7CXQ0_9LAMI) HSP 1 Score: 98.6 bits (244), Expect = 5.490e-23 Identity = 52/137 (37.96%), Postives = 82/137 (59.85%), Query Frame = 1
Query: 1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
++ N WE + PT R + K YK K + DG +++Y+ R+VA+G+ QIEG +Y + ++PT + LLA A++++ L FD + F+ D+DEEVY++IP G +H V +L ++YGL QA R KF
Sbjct: 8 LIQNKSWEIVSLPTGHRPIGCKWVYKIKYNSDGSIDRYKVRLVAKGYMQIEGTDYFETFSPTAKLTTVCCLLAIASSRNWFLSHFDVQNTFLHGDLDEEVYMDIPLGLYRHGENMVCRLKISLYGLKQASRNWFAKF 144
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1R3IX18_COCAP (Integrase, catalytic core n=1 Tax=Corchorus capsularis TaxID=210143 RepID=A0A1R3IX18_COCAP) HSP 1 Score: 102 bits (255), Expect = 1.040e-22 Identity = 56/138 (40.58%), Postives = 84/138 (60.87%), Query Frame = 1
Query: 7 DNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGA----VGKLNKAIYGLAQAGRRLNTKF 408
+NG W+ + P DKR + +K YK K +G++E+Y+ R+VA+GF QIEGV++ + + P V+ R LLA AA + E+ D F+ D++EEV+++IP Q F+ A V KL K++YGL QA R KF
Sbjct: 773 ENGTWDLVPLPQDKRAIDSKWVYKVKFKPNGEIERYKARLVAKGFTQIEGVDFHETFAPVAKLVTVRCLLAIAAKRRWEVHQLDVNNVFLHGDLEEEVFMKIP---QGFAKAGETRVCKLKKSLYGLRQASRNWYHKF 907
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A2I0IH07_PUNGR (Reverse transcriptase Ty1/copia-type domain-containing protein n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0IH07_PUNGR) HSP 1 Score: 100 bits (250), Expect = 1.670e-22 Identity = 56/136 (41.18%), Postives = 76/136 (55.88%), Query Frame = 1
Query: 10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFCD 414
NG W P K+ V K YK K DG VE+Y+ +VA+GF Q+EGV++TK + P V+ R LA A K E+ D AF+ + EEVY+ +P G + SG V +L+K+IYGL QA R +K D
Sbjct: 11 NGTWTLSTLPYGKKPVDCKWVYKVKRHADGSVERYKAHLVAKGFTQVEGVDFTKTFAPVAKLVTVRCFLAVAVVKKWEIHQMDVHNAFLHGHLHEEVYMSLPPGLLATSSGQVCRLHKSIYGLRQASRNWFSKLAD 146
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A438GNV2_VITVI (Retrovirus-related Pol polyprotein from transposon RE1 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438GNV2_VITVI) HSP 1 Score: 100 bits (250), Expect = 4.310e-22 Identity = 54/134 (40.30%), Postives = 78/134 (58.21%), Query Frame = 1
Query: 10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
N W+ + P +K+ + K YK K + DG +E+Y+ R+VAQGF QIEG++Y + ++P S R LA A AK EL D AF+ D++EEVY+++P G V KL K++YGL QA R+ K
Sbjct: 110 NQTWKVVDLPPEKKAIGCKWIYKIKYNADGSIERYKARLVAQGFTQIEGIDYQETFSPVAKMTSVRCFLAIAVAKRWELHQMDVNNAFLHGDLEEEVYMKLPEGFKATGKNKVCKLQKSLYGLKQASRQWFAKL 243
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1C7MSU6_GRIFR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Grifola frondosa TaxID=5627 RepID=A0A1C7MSU6_GRIFR) HSP 1 Score: 100 bits (249), Expect = 6.400e-22 Identity = 51/131 (38.93%), Postives = 79/131 (60.31%), Query Frame = 1
Query: 16 VWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSGAVGKLNKAIYGLAQAGRRLNTKF 408
+++++ RP D+++V K ++ K DG++EKY+ R+VA+GF Q+EGV+YT + P S R LLA AA D E+ D + AF+ ++DEE+++ P Q V +L KA+YGL QA R K
Sbjct: 313 LYDEVERPRDRKVVGCKWVFRIKRGPDGEIEKYKARVVAKGFTQVEGVDYTDTFAPVTKFASIRALLALAAKLDLEIHQMDVKSAFLNGNLDEEIFMACPPGFQGARNIVWQLRKALYGLKQASREWYKKI 443
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: UPI000CE26BD7 (uncharacterized protein LOC111985884 n=1 Tax=Quercus suber TaxID=58331 RepID=UPI000CE26BD7) HSP 1 Score: 100 bits (249), Expect = 6.430e-22 Identity = 51/138 (36.96%), Postives = 80/138 (57.97%), Query Frame = 1
Query: 1 MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIPGRIQHFSG-AVGKLNKAIYGLAQAGRRLNTKFC 411
++ N W P++++ + K Y+ K DG VE+Y+ R+VA+GF Q EG+++T ++P + + LLA ++ K L D AF+ D+ EEVY+++P G V KLNK++YGL QA R+ N KFC
Sbjct: 650 LVSNHTWTLTPLPSNEKAIGCKWIYRVKYKADGSVERYKARLVAKGFTQQEGLDFTDTFSPVAKLTTVKTLLAISSVKGWHLVQLDVNNAFLNGDLHEEVYMQLPQGFHSKGGNVVCKLNKSLYGLKQASRQCNAKFC 787
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Match: A0A1U8BCN7_NELNU (uncharacterized protein LOC104609701 n=1 Tax=Nelumbo nucifera TaxID=4432 RepID=A0A1U8BCN7_NELNU) HSP 1 Score: 100 bits (248), Expect = 8.890e-22 Identity = 53/135 (39.26%), Postives = 78/135 (57.78%), Query Frame = 1
Query: 10 NGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIEGVNYTKKYTPTPATVSTRMLLATAAAKDGELRPFDAEPAFMKADIDEEVYIEIP-GRIQHFSGAVGKLNKAIYGLAQAGRRLNTKFC 411
N WE + P K+ + +K YK K DG ++ Y+ R+VA+G+ QIEGV+Y ++P V+ R+ LA A AK+ L D AF+ +DEEV+I+ P G + V L +++YGL QA R+ N KFC
Sbjct: 596 NNTWELVPLPPKKKAIGSKWVYKVKYLLDGTIDSYKARLVAKGYHQIEGVDYNDSFSPVAKVVTVRIFLAIAIAKNWALHQLDINNAFLHGYLDEEVFIQPPQGYTKAKPHEVSLLKRSLYGLKQASRQWNVKFC 730 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4552.11421.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4552.11421.1 >prot_H-paniculata_contig4552.11421.1 ID=prot_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=140bp MMDNGVWEKIVRPTDKRLVRTKIFYKRKISKDGKVEKYRCRIVAQGFRQIback to top mRNA from alignment at H-paniculata_contig4552:13120..13539+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4552.11421.1 ID=mRNA_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=420bp|location=Sequence derived from alignment at H-paniculata_contig4552:13120..13539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4552:13120..13539+ >mRNA_H-paniculata_contig4552.11421.1 ID=mRNA_H-paniculata_contig4552.11421.1|Name=mRNA_H-paniculata_contig4552.11421.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=840bp|location=Sequence derived from alignment at H-paniculata_contig4552:13120..13539+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |