prot_H-paniculata_contig4544.11411.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4544.11411.1
Unique Nameprot_H-paniculata_contig4544.11411.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length378
Homology
BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 4.100e-20
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 0
Query:    4 LSIIPADQVLAVAIKDATKSTSTVNPARITTAIQKMRPDWSVNKRRVKRLLRSMNNDAWEAAVLPSSN 71
            ++++P D  L +AIKDAT STSTVNPARIT+A+QKMRPDW VNKRRVKRLLRSMNNDAW+AAV  + N
Sbjct:   31 MAMLPDDSTLTIAIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVN 98          
BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Match: A0A6H5K3S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.290e-8
Identity = 159/325 (48.92%), Postives = 182/325 (56.00%), Query Frame = 0
Query:   39 MRPDWSVNKRRVKRLLRSMNNDAWEAAV---LPSSNPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSGGNICDTAPASPGSPAAVAATGFSVTPIGHRTCSTSLPSTVVAAVNVPQDDDVLGATPTAATAMVEGN--PPLPYAATA----------SPWDER-MMGELDGAHGVLGEIPDELSDSLRLEPDIELEPGVDLKADLGL-----AVADESVVAMSTTMAVPVEHESGVSAGGKA---DDLGFEMIDKDEAAG 339
            MRPDW VNKRRVKRLLRSMNNDAW+AAV   + + NP+                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX           +C+TAPASPGSPA            G  T +T+       AV            P  + A   G+  P    +ATA          +PW++  ++  ++G     GE P  LS+SL L  D+ELEPGVDLKADLG+     A                    S VS  G+A   D+LGFEMIDK E  G
Sbjct:    1 MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSGRGSSTTTIATASEPPSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXX----------GVCETAPASPGSPA------------GPTTAATA----AATAVGSXXXXXXXXXAPLLSPAETVGSCQPGANCSATAGXXXXXXXXGAPWEDGGVVAPVEG-----GEEP--LSESLDLATDLELEPGVDLKADLGIVTNAPAAXXXXXXXXXXXXXXXXXXXSAVSDSGRAEAADNLGFEMIDKAEVVG 292          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHS4_ECTSI4.100e-2073.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3S6_9PHAE1.290e-848.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4544contigH-paniculata_contig4544:8300..11800 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4544.11411.1mRNA_H-paniculata_contig4544.11411.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4544 8292..11969 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4544.11411.1 ID=prot_H-paniculata_contig4544.11411.1|Name=mRNA_H-paniculata_contig4544.11411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=378bp
MPVLSIIPADQVLAVAIKDATKSTSTVNPARITTAIQKMRPDWSVNKRRV
KRLLRSMNNDAWEAAVLPSSNPTSSSNTTTINTTTSLPLAPDNTTPSSAA
SSTRAEAFTSPETSKASSGGGGSHGGRRPGRAARNAAARRSRNASLASST
PSSSAGGGTGGKESSANSGGNICDTAPASPGSPAAVAATGFSVTPIGHRT
CSTSLPSTVVAAVNVPQDDDVLGATPTAATAMVEGNPPLPYAATASPWDE
RMMGELDGAHGVLGEIPDELSDSLRLEPDIELEPGVDLKADLGLAVADES
VVAMSTTMAVPVEHESGVSAGGKADDLGFEMIDKDEAAGAALNAEGSERG
TDRSPVDSAPVSGKAARKAWPWIWGRN*
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