mRNA_H-paniculata_contig4544.11411.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4544.11411.1
Unique NamemRNA_H-paniculata_contig4544.11411.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Match: D7FHS4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FHS4_ECTSI)

HSP 1 Score: 100 bits (248), Expect = 3.090e-20
Identity = 50/68 (73.53%), Postives = 59/68 (86.76%), Query Frame = 3 
Query:   18 LSIIPADQVLAVAIKDATKSTSTVNPARITTAIQKMRPDWSVNKRRVKRLLRSMNNDAWEAAVLPSSN 221
            ++++P D  L +AIKDAT STSTVNPARIT+A+QKMRPDW VNKRRVKRLLRSMNNDAW+AAV  + N
Sbjct:   31 MAMLPDDSTLTIAIKDATVSTSTVNPARITSAVQKMRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVN 98
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BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Match: A0A6H5K3S6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K3S6_9PHAE)

HSP 1 Score: 66.6 bits (161), Expect = 1.750e-8
Identity = 159/325 (48.92%), Postives = 182/325 (56.00%), Query Frame = 3 
Query:  123 MRPDWSVNKRRVKRLLRSMNNDAWEAAV---LPSSNPTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXANSGGNICDTAPASPGSPAAVAATGFSVTPIGHRTCSTSLPSTVVAAVNVPQDDDVLGATPTAATAMVEGN--PPLPYAATA----------SPWDER-MMGELDGAHGVLGEIPDELSDSLRLEPDIELEPGVDLKADLGL-----AVADESVVAMSTTMAVPVEHESGVSAGGKA---DDLGFEMIDKDEAAG 1025
            MRPDW VNKRRVKRLLRSMNNDAW+AAV   + + NP+                    XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXX           +C+TAPASPGSPA            G  T +T+       AV            P  + A   G+  P    +ATA          +PW++  ++  ++G     GE P  LS+SL L  D+ELEPGVDLKADLG+     A                    S VS  G+A   D+LGFEMIDK E  G
Sbjct:    1 MRPDWCVNKRRVKRLLRSMNNDAWKAAVNTTVNAGNPSGRGSSTTTIATASEPPSAEAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGXXX----------GVCETAPASPGSPA------------GPTTAATA----AATAVGSXXXXXXXXXAPLLSPAETVGSCQPGANCSATAGXXXXXXXXGAPWEDGGVVAPVEG-----GEEP--LSESLDLATDLELEPGVDLKADLGIVTNAPAAXXXXXXXXXXXXXXXXXXXSAVSDSGRAEAADNLGFEMIDKAEVVG 292
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4544.11411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FHS4_ECTSI3.090e-2073.53Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K3S6_9PHAE1.750e-848.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4544contigH-paniculata_contig4544:8292..11969 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_006590.1
Exons2
Model size1311
Cds size1134
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4544.11411.1prot_H-paniculata_contig4544.11411.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4544 8300..11800 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930362.6820223-UTR-H-paniculata_contig4544:8291..82991622930362.6820223-UTR-H-paniculata_contig4544:8291..8299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 8292..8299 +
1691481258.1436498-UTR-H-paniculata_contig4544:8291..82991691481258.1436498-UTR-H-paniculata_contig4544:8291..8299Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 8292..8299 +
1622930362.7240996-UTR-H-paniculata_contig4544:11800..119691622930362.7240996-UTR-H-paniculata_contig4544:11800..11969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 11801..11969 +
1691481258.1690674-UTR-H-paniculata_contig4544:11800..119691691481258.1690674-UTR-H-paniculata_contig4544:11800..11969Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4544 11801..11969 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930362.698257-CDS-H-paniculata_contig4544:8299..84221622930362.698257-CDS-H-paniculata_contig4544:8299..8422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 8300..8422 +
1691481258.1520371-CDS-H-paniculata_contig4544:8299..84221691481258.1520371-CDS-H-paniculata_contig4544:8299..8422Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 8300..8422 +
1622930362.712415-CDS-H-paniculata_contig4544:10789..118001622930362.712415-CDS-H-paniculata_contig4544:10789..11800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 10790..11800 +
1691481258.1595082-CDS-H-paniculata_contig4544:10789..118001691481258.1595082-CDS-H-paniculata_contig4544:10789..11800Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4544 10790..11800 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4544.11411.1

>prot_H-paniculata_contig4544.11411.1 ID=prot_H-paniculata_contig4544.11411.1|Name=mRNA_H-paniculata_contig4544.11411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=378bp
MPVLSIIPADQVLAVAIKDATKSTSTVNPARITTAIQKMRPDWSVNKRRV
KRLLRSMNNDAWEAAVLPSSNPTSSSNTTTINTTTSLPLAPDNTTPSSAA
SSTRAEAFTSPETSKASSGGGGSHGGRRPGRAARNAAARRSRNASLASST
PSSSAGGGTGGKESSANSGGNICDTAPASPGSPAAVAATGFSVTPIGHRT
CSTSLPSTVVAAVNVPQDDDVLGATPTAATAMVEGNPPLPYAATASPWDE
RMMGELDGAHGVLGEIPDELSDSLRLEPDIELEPGVDLKADLGLAVADES
VVAMSTTMAVPVEHESGVSAGGKADDLGFEMIDKDEAAGAALNAEGSERG
TDRSPVDSAPVSGKAARKAWPWIWGRN*
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mRNA from alignment at H-paniculata_contig4544:8292..11969+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4544.11411.1 ID=mRNA_H-paniculata_contig4544.11411.1|Name=mRNA_H-paniculata_contig4544.11411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3678bp|location=Sequence derived from alignment at H-paniculata_contig4544:8292..11969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
AAAAAAGAATGCCGGTTTTGAGCATCATCCCTGCGGATCAAGTGCTTGCT
GTGGCGATAAAGGATGCTACCAAAAGCACGTCCACCGTCAATCCGGCCAG
GATCACCACAGCGATTCAGAAGATGAGACCGGTGAGGACAACAGGCATCG
AGCAGCTCTTTCAAATCAATTGATGCTGATGATGAATGATGAGATGCGAA
TGCTTTTCGATCCAAGCCCCCCCGAAGAGCACAAATTTGGAGAAATACTG
CAAACGTACATCGCGTGAACGCTCTGCTTTTCTCTCATCATGTCTGCTTC
CTTCTCTCTCGCATGCGCGGTGAATGAGCTTGCAATCGAAAGCCCGGCCC
TCTGGATTGCAAGCCTCCATAGGTTTTGCATTCACAATCCATCGCTTGCC
ACACCGTAGAGGTGTGACTTTGAATGTTCTTCAATTCCTTGAAAATGAAG
GAAATTGCGTTGGTATCTTGCCTCCTGCGTATATTATTCGGCGTATCAGC
GGCAACACAACAAGGGCCTTACTGTATTCAGCACTTCAAGTTTGACAAGA
AGACACGTGTTGAACAGAGGAGCGCTCGCAACTGCATCGCGCCCTCTGTG
TTACCCAGTCCCGTCTATTATTTCCGCAGTGGCCAGGTTGCTCTGCTCTG
CCGCTAGTTACTCCGACAGCGGTTGAGCTTTTCTCTACATAGCAAACAGT
GCACGAAAAATCATCCCAATCACGCCTGGCTACAGCAGTCTGACCGTGTG
GGTAGCACTCTTCCCTACTCTTGTTTAATCTTTGATGATCTGTGCATTCA
GCAGGTCTTGGTTGCACAACGCACTTGTTTGGTAAAATGCAGCAGTCAGC
AGAGTACATCAACTCCAGTATGATGATTTGTTTGTTTTTAACGTGATGAT
CCAGGCGCTCACGTGTGCAATACGCGTACCGATTTTCACTGCACTGCGGA
ACTGGAGTACGACGGTTGGAATATACAGTGGTGTGTTTCGTGCTTTCGAG
TTCTCTCGAAGCTGTTACCTATGGACACCTATATTCGTTTTATTCGTGTT
TCGCTTCCGTGTGCTGATTTGTCCTATTAATAGAGTCTTTTGAACCTATG
CATGTGTTGTTGAACGAGATGGAGATGCCTACTAGTTCATATGGATTGAA
GCTACTGAACTACTTCTCCTGCCTGCGTAGCACGAGCAGATTGGACGTCG
CTACTCTTTCCATTGACTTCGAGGCAGCTCCTCTCCCACCAGAGCACAAC
ACATAACAAGCAACAACTGTCGCGCCTCTCTCCAAACAGATTCACGTTGT
TGGCTCATACTCTACTCTACTGTATACGGCTGCTCGTTTGTCTCTATCAC
GAGTAACACGCGGGATTCCACGAAAATACGATGTCCTGCGAGCAGTAATT
CCCGGTTTGCATTTCGATTTGTTGTTTGGCGATACTGTGTGTATTTTTCG
GTGATGCCAGTTTACCGCTACTTGCTGAGTCGGCGTATGGACTGTGTCGC
CTCTGCTTGCCCCCACCGTTGCCAACGGTTCCCTTCGCACAAGAGTATAT
GTGGAACCTTTTTGTCGGCGCCGCCTTCCTTTTTTTTATCCTCTAACGCG
TCAAAACTCATTTTTGTAATACGAAGTTCCAGGAGCAATTGCACCTAGTA
ATTGAGTGAGAAAAAGTATTCAACCAAGGATGTAGACGGTGTTTGGACCA
TAACCAAATCGTGCGTTAGATATAGGAGTCAAGAAGTAGTGAAACTCTCG
GAACCCCGCCGCGTAAAATCACATGTTTTGCTCTCTCCTCCCCTTTTCCC
CGCTCGCATGCAGCTTTGCCCAGAAAATTCCAATACTTGCCTACGACTTC
GAGGCAGACACTTGTTATATTATTTTTCAAATTCCAGACGTGCCTACTTT
TAATGTTTGCGGGATGCGGTAGGAACCACGCAACGTAGTGGTTTGGTTAA
TCAGAGTGCACGTTCCACGCACAATCCACGTCCCAATTGGCGGTGTTTGG
AATATTCAGTAAAGAATTCCTCTGCCTACATAACTCAACCGCAGCAGGAC
GTTGTCGTTGTCGATCAACCGCAAAAGCCCCTCCTTGCTCTACACCATCA
GTCGGCGGTTAGCTTGCCGTTCTACACGAGGTGCACGTATTCATCTATTT
TGGCGTTCTTATTTTTGTGCTCGCCTTCCAACGTACAAATGAAACCGTCT
GGATAAACCTCGAAATCTCCCAAAAACAAGTTAGACCTATACTCTATGTG
GGAATCGGGTTTCGTAACTGCCACATGGTAAAATTACTCACAAATCCACA
ACGCCAATACCGAATATATCACGTCGGCAGAGGACCTAAGCAGCTCTGGG
TAGCTGGTTGGCGCATCTCGGATGCAAAAAGAGGTAATTTTTTTGCCGTT
TGGGCTCTTCTGTTGAATTTAGTGCATAGCTGATTAGGAGGTCACAATTT
TGTAAAGGGCTAAATTACTCATCGCTACTACTCTCCCTCCGCCACCAGGA
CTGGTCCGTAAACAAGCGCCGCGTGAAGCGCTTGCTGCGTTCCATGAATA
ACGACGCTTGGGAAGCCGCAGTGCTCCCGTCGTCCAACCCCACTTCCTCC
AGCAACACGACCACCATCAACACCACAACTTCATTACCGTTAGCCCCGGA
CAACACGACCCCGTCGTCGGCCGCATCATCGACAAGGGCGGAAGCCTTCA
CTTCACCAGAAACGTCTAAGGCGTCGTCGGGCGGCGGCGGCAGCCACGGG
GGCCGCCGTCCCGGTCGCGCCGCTCGCAACGCGGCGGCCCGCCGCTCCAG
AAACGCCTCCTTGGCGTCGTCGACGCCCTCCTCTTCCGCCGGAGGTGGTA
CGGGGGGCAAGGAGTCGTCAGCCAACAGCGGTGGCAACATTTGCGACACT
GCGCCGGCTTCGCCCGGCTCCCCGGCGGCGGTGGCGGCCACCGGCTTCTC
GGTGACGCCCATTGGCCACCGTACTTGTAGCACATCATTGCCGAGCACGG
TGGTGGCGGCGGTCAATGTCCCACAGGATGATGACGTCTTGGGCGCTACG
CCGACGGCGGCGACGGCGATGGTGGAGGGGAACCCCCCGTTGCCATATGC
CGCCACCGCGTCTCCGTGGGACGAGAGGATGATGGGTGAGCTTGACGGGG
CGCATGGGGTTTTGGGGGAGATCCCGGACGAGTTAAGCGATAGCCTCAGG
CTGGAGCCCGACATCGAGCTTGAACCCGGGGTTGATCTGAAGGCTGATCT
CGGACTTGCGGTGGCGGATGAAAGCGTGGTGGCAATGTCGACGACGATGG
CCGTCCCCGTGGAGCATGAGTCAGGAGTGAGCGCTGGTGGTAAGGCGGAT
GATCTCGGGTTCGAGATGATCGATAAGGACGAGGCTGCTGGGGCGGCCTT
GAACGCCGAAGGCTCAGAGAGGGGCACGGACCGTTCCCCGGTGGACTCTG
CACCGGTTTCTGGGAAGGCTGCCCGTAAAGCGTGGCCGTGGATCTGGGGC
CGGAACTGATCTTATTTTTCTACCCTTGGGTGTGTTTTCTCCTCTCTGGT
CTTCACGTAGTGGAAGTATGCTCTGCCGTTATAGGATAGATCGAGTCGAT
GTATCTAATTCTGGTCAAGTGTTCACTTCTATCCCAAACGTTCTTCCTTT
TTTTCTCTGGCTTTTGTCCGTTTGCGCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4544:8292..11969+

>mRNA_H-paniculata_contig4544.11411.1 ID=mRNA_H-paniculata_contig4544.11411.1|Name=mRNA_H-paniculata_contig4544.11411.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=2268bp|location=Sequence derived from alignment at H-paniculata_contig4544:8292..11969+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCCGGTTTTGAGCATCATCCCTGCGGATCAAGTGCTTGCTGTGGCGAT
AAAGGATGCTACCAAAAGCACGTCCACCGTCAATCCGGCCAGGATCACCA
CAGCGATTCAGAAGATGAGACCGATGCCGGTTTTGAGCATCATCCCTGCG
GATCAAGTGCTTGCTGTGGCGATAAAGGATGCTACCAAAAGCACGTCCAC
CGTCAATCCGGCCAGGATCACCACAGCGATTCAGAAGATGAGACCGGACT
GGTCCGTAAACAAGCGCCGCGTGAAGCGCTTGCTGCGTTCCATGAATAAC
GACGCTTGGGAAGCCGCAGTGCTCCCGTCGTCCAACCCCACTTCCTCCAG
CAACACGACCACCATCAACACCACAACTTCATTACCGTTAGCCCCGGACA
ACACGACCCCGTCGTCGGCCGCATCATCGACAAGGGCGGAAGCCTTCACT
TCACCAGAAACGTCTAAGGCGTCGTCGGGCGGCGGCGGCAGCCACGGGGG
CCGCCGTCCCGGTCGCGCCGCTCGCAACGCGGCGGCCCGCCGCTCCAGAA
ACGCCTCCTTGGCGTCGTCGACGCCCTCCTCTTCCGCCGGAGGTGGTACG
GGGGGCAAGGAGTCGTCAGCCAACAGCGGTGGCAACATTTGCGACACTGC
GCCGGCTTCGCCCGGCTCCCCGGCGGCGGTGGCGGCCACCGGCTTCTCGG
TGACGCCCATTGGCCACCGTACTTGTAGCACATCATTGCCGAGCACGGTG
GTGGCGGCGGTCAATGTCCCACAGGATGATGACGTCTTGGGCGCTACGCC
GACGGCGGCGACGGCGATGGTGGAGGGGAACCCCCCGTTGCCATATGCCG
CCACCGCGTCTCCGTGGGACGAGAGGATGATGGGTGAGCTTGACGGGGCG
CATGGGGTTTTGGGGGAGATCCCGGACGAGTTAAGCGATAGCCTCAGGCT
GGAGCCCGACATCGAGCTTGAACCCGGGGTTGATCTGAAGGCTGATCTCG
GACTTGCGGTGGCGGATGAAAGCGTGGTGGCAATGTCGACGACGATGGCC
GTCCCCGTGGAGCATGAGTCAGGAGTGAGCGCTGGTGGTAAGGCGGATGA
TCTCGGGTTCGAGATGATCGATAAGGACGAGGCTGCTGGGGCGGCCTTGA
ACGCCGAAGGCTCAGAGAGGGGCACGGACCGTTCCCCGGTGGACTCTGCA
CCGGTTTCTGGGAAGGCTGCCCGTAAAGCGTGGCCGTGGATCTGGGGCCG
GAACTGAGACTGGTCCGTAAACAAGCGCCGCGTGAAGCGCTTGCTGCGTT
CCATGAATAACGACGCTTGGGAAGCCGCAGTGCTCCCGTCGTCCAACCCC
ACTTCCTCCAGCAACACGACCACCATCAACACCACAACTTCATTACCGTT
AGCCCCGGACAACACGACCCCGTCGTCGGCCGCATCATCGACAAGGGCGG
AAGCCTTCACTTCACCAGAAACGTCTAAGGCGTCGTCGGGCGGCGGCGGC
AGCCACGGGGGCCGCCGTCCCGGTCGCGCCGCTCGCAACGCGGCGGCCCG
CCGCTCCAGAAACGCCTCCTTGGCGTCGTCGACGCCCTCCTCTTCCGCCG
GAGGTGGTACGGGGGGCAAGGAGTCGTCAGCCAACAGCGGTGGCAACATT
TGCGACACTGCGCCGGCTTCGCCCGGCTCCCCGGCGGCGGTGGCGGCCAC
CGGCTTCTCGGTGACGCCCATTGGCCACCGTACTTGTAGCACATCATTGC
CGAGCACGGTGGTGGCGGCGGTCAATGTCCCACAGGATGATGACGTCTTG
GGCGCTACGCCGACGGCGGCGACGGCGATGGTGGAGGGGAACCCCCCGTT
GCCATATGCCGCCACCGCGTCTCCGTGGGACGAGAGGATGATGGGTGAGC
TTGACGGGGCGCATGGGGTTTTGGGGGAGATCCCGGACGAGTTAAGCGAT
AGCCTCAGGCTGGAGCCCGACATCGAGCTTGAACCCGGGGTTGATCTGAA
GGCTGATCTCGGACTTGCGGTGGCGGATGAAAGCGTGGTGGCAATGTCGA
CGACGATGGCCGTCCCCGTGGAGCATGAGTCAGGAGTGAGCGCTGGTGGT
AAGGCGGATGATCTCGGGTTCGAGATGATCGATAAGGACGAGGCTGCTGG
GGCGGCCTTGAACGCCGAAGGCTCAGAGAGGGGCACGGACCGTTCCCCGG
TGGACTCTGCACCGGTTTCTGGGAAGGCTGCCCGTAAAGCGTGGCCGTGG
ATCTGGGGCCGGAACTGA
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