prot_H-paniculata_contig41270.10620.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig41270.10620.1
Unique Nameprot_H-paniculata_contig41270.10620.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length249
Homology
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A445G8E4_GLYSO (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=2 Tax=Glycine soja TaxID=3848 RepID=A0A445G8E4_GLYSO)

HSP 1 Score: 104 bits (260), Expect = 7.110e-22
Identity = 82/250 (32.80%), Postives = 121/250 (48.40%), Query Frame = 0
Query:    7 RRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLNME--DLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ--------------TGILVAVYVDDLV---IAGRREKVDELKHNL 237
            R KLDDK+   +F GYD  S  Y+ Y   ++ +  S +V FDEED       + ++D  L  E  D    P +   +T        AS+    D TS+S+  P L +        +   EE K++ K  T E      LP G KAI  +W++K K      V RYKA+LVA+G+S+ + +D+ E  APVAR+ T+R +  LAA+                G L  VY++  +   + G+ EKV +LK  L
Sbjct:  668 RTKLDDKSEKYVFVGYDSRSKGYKHYNPNSRKIVISCDVEFDEEDCWDWSVQEDKYDFLLYFEEDDEIQQPIIEEHIT------PPASLTPRLDETSSSERTPRLRSIEEIYEWKDAMDEEIKSITKNDTWELTT---LPRGHKAIGVRWVYKAKKNAKRDVERYKARLVAKGYSQRQEIDYDEVFAPVARLETIRLIISLAAQNKWKIHQMDVKSAFLNGFLEEVYIEQPLGYEVKGQEEKVLKLKKAL 908          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A438E8Q2_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438E8Q2_VITVI)

HSP 1 Score: 100 bits (249), Expect = 1.940e-20
Identity = 93/292 (31.85%), Postives = 137/292 (46.92%), Query Frame = 0
Query:    1 MFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDF---VTGHRGQQEHDGTLNM---EDL------------FSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPA------------ASANPFG-----EEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQTGI-------LVAVYVDDLVIAGRREK-VDELKHNLSRRFRMKDLGSL 249
            + QS +  KL+ ++    F GY E    YR Y   +  ++ SRNV F E      ++  R    +   L +   E L            FS   +   + R   +     +P+ E   + S  P +L  H   A            AS +P       EE  AL K  T +      LP GQ  +  KWI+K K + D SV RYKA+LVA+GF++  G+D+ ET APVAR+S++R +  +AA +          L+ +YVDD++I G   + + ELK  LS++F MKDLG L
Sbjct:  663 LLQSHEHNKLESRSRLCCFLGYGETQKGYRCYDPVSHRLRVSRNVVFWEHRLFVELSHFRSSLTNSSVLEIFPDESLVPSTNTFDPPLDFSPDILMLLLDRLQMKQIDDELPHFE---TGSIPPHLLDYHCYTALATLHEPQTYREASTDPLWQIAMKEELDALTKNHTWDLVP---LPPGQSVVGCKWIYKIKTRSDGSVERYKARLVAKGFTQEYGIDYEETFAPVARISSVRALLAVAAARQWTFFRWMHYLLLLYVDDMIITGNDLRGIQELKDFLSQQFEMKDLGHL 948          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A8J5YMD5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YMD5_9ROSI)

HSP 1 Score: 98.6 bits (244), Expect = 8.200e-20
Identity = 72/217 (33.18%), Postives = 111/217 (51.15%), Query Frame = 0
Query:    4 SQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLN--MEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEE-W--------KALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ 209
            +++R KL+ ++  G+F GY      YRI+    K +  SR+V+F+EE       G  + DGT    +E+  ++P + P    + AE +    P    RT A        T   P+  A    EE W        K + K  T E  +    P  +K I  KW+F+ K   D  + ++KA+LV +G+S+ +GVDFFET APVAR+ T+R +F LAA++
Sbjct:  170 AEKRTKLEKRSMPGVFVGYSRVKKGYRIFDPLTKKIIVSRDVKFNEE-------GYWKWDGTNASLLEEDQNSPDLQPPEIEAEAEDDYDDAPIRGTRTLADIYERCAMTIVEPSCYAKAVKEECWQEAMEAELKMIQKNDTWELVN---RPENRKVIGVKWVFRTKTNSDGFLNKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRFLFALAAQK 376          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: Q53MQ5_ORYSJ (Retrotransposon protein, putative, Ty1-copia subclass n=2 Tax=Oryza sativa subsp. japonica TaxID=39947 RepID=Q53MQ5_ORYSJ)

HSP 1 Score: 97.4 bits (241), Expect = 2.280e-19
Identity = 82/278 (29.50%), Postives = 133/278 (47.84%), Query Frame = 0
Query:    7 RRKLDDKAWAGIFPGYDEDSPSYRIYISENK-------SVQSSRNVRFDEEDFVTGHRGQQEHDGTLNMEDLFS---TPPVTPAVTRSHA-EGEQASVPNTEDRTSASQ---------MPPILPTHSLPAASANPFGEEWK--------ALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLR--------TVFCLAAEQTGILVAVYVDDLVIAGRR-EKVDELKHNLSRRFRMKDLG 247
            + KL  K    IF GY   S +YR  I +++       ++  SR+  F E  F      +  H  +     +     TPP     T  H  E + +  P    R   ++         +    P  S+  A A+P  + WK        +++  GT E  +    P G K +  KW+FK+KL+ D ++ +YKA+LVA+G+++ EG DFF+T +PVAR++T+R         V+       G+++ +YVDD++I G   E ++E+K  L + F MKDLG
Sbjct:  657 KSKLGPKTVDCIFLGYAHHSIAYRFLIVKSEVPDMHVGTIMESRDATFFESFFPM----KDTHSSSSQPSKIIPSSITPPEQTEHTHEHVTEEDDSEAPRRSKRQRTTKSFGDDFTVYLVDDTPK-SISEAYASPDADYWKEAVHSEMDSIIANGTWEVTE---RPYGCKPVGCKWVFKKKLRPDGTIEKYKARLVAKGYTQKEGEDFFDTYSPVARLTTIRFAVNEADKCVYYRHGGGEGVILCLYVDDILIFGTNLEVINEVKSFLFQNFDMKDLG 926          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI)

HSP 1 Score: 97.4 bits (241), Expect = 2.310e-19
Identity = 70/215 (32.56%), Postives = 104/215 (48.37%), Query Frame = 0
Query:    7 RRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDF----VTGHRGQQEHDGTLNMEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEEWKALVKK--------GTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ 209
            R+KLD ++   IF G+ E     ++          SR+V FDE+ F    V       E D    +  L +  P  P+    H   +   V    D   ++  P      ++  A   P    W+  +KK        GT   ED   LP G++A+ +KW+FK KLK D +V +YKA+LVAQGF++  GVD+ ET APV + +TLR +  LAA++
Sbjct:  726 RQKLDARSAPYIFIGFQEGVKGVKVLHPIKMRSTFSRDVVFDEDTFGIPEVEADAFPDEDDEEAQVNALLNPAPTVPSTDDHHDADDDEEV----DFALSAHGPQDQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLED---LPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQE 933          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A6D2JCN6_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JCN6_9BRAS)

HSP 1 Score: 97.1 bits (240), Expect = 2.460e-19
Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 0
Query:  124 EEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAA-----------EQTGILVAVYVDDLVIAGRR-EKVDELKHNLSRRFRMKDLGSL 249
            EE  ++VK  T +  D   LPAG KAI  KW+FK K   D S+ ++K++LVA+G+ +  GVDF E  APVAR+ T+R +  LAA           E+  +LVAVYVDDL++ G   E + E K  +S  F M DLG L
Sbjct:  362 EEISSIVKNKTWDLVD---LPAGAKAIGLKWVFKIKRNSDGSLNKHKSRLVAKGYVQKFGVDFEEVFAPVARIKTIRFLIALAASNGWEIHHLDEEEHILLVAVYVDDLLVTGSSLEMIIEFKRGMSANFEMSDLGKL 496          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A438BNH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BNH9_VITVI)

HSP 1 Score: 97.1 bits (240), Expect = 2.740e-19
Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 0
Query:  104 QMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQTGILVA---------------VYVDDLVIAGR-REKVDELKHNLSRRFRMKDLGSL 249
            Q P     HS    +   +  E  AL K GT    D   LP G++ +  KWIF  K K D SV R+KA L+A+GF++  G+D+ ET APVA+++T+R +  LA  Q  +++                VYVDD++++G   E++ +LK  LS+ F +KDLG+L
Sbjct:  337 QFPTQYKRHSKFQNARRQYKIEIDALEKNGTWTITD---LPVGKRPVGCKWIFTIKYKADGSVERFKAHLLARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWLIILYLSRNLMPGKMAILIVYVDDIILSGNDMEELQKLKKYLSKEFEVKDLGNL 495          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A8J6CTJ0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CTJ0_9ROSI)

HSP 1 Score: 96.3 bits (238), Expect = 5.600e-19
Identity = 75/245 (30.61%), Postives = 119/245 (48.57%), Query Frame = 0
Query:    4 SQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLN--MEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGE---------EWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQTGILVAVYVDDLVIAGRREKVDELKHNL 237
            ++++ KL+ ++  G+F GY      YRI+    K +  SR+V+F+EE       G  + DGT    +E+  ++P + P    + AE +    P    R  A        T   P+  A    +         E K + K  T E  +    P  +K I  KW+F+ K   D S+ ++KA+LV +G+S+ +GVDFFET APVAR+ T+R +F LAA++         +   ++G   KV  LK  L
Sbjct:  514 AEKKTKLEKRSIPGVFVGYSSVKKGYRIFDPLTKKIIVSRDVKFNEE-------GYWKWDGTNASLLEEDQNSPDLQPTEIEAEAEDDYDDAPIRGTRILADIYERCAMTLVEPSCYAEAVKDKCWQEAMEAELKMIQKNDTWELVN---RPENRKVIGVKWVFRTKTNSDGSLKKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRLLFTLAAQKQW-----KPEGFEVSGEEHKVYRLKKAL 743          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: UPI00092F96E3 (uncharacterized protein LOC109344675 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F96E3)

HSP 1 Score: 90.9 bits (224), Expect = 6.000e-19
Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 0
Query:  143 LPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRT-----------VFCLAAEQTGI---LVAVYVDDLVIAGRREKVDELKHN---LSRRFRMKDLGSL 249
            LP  +KAIR KWIFK K   D SV RYKA+LVAQGF++ EGVD+ ET +PV +M+T+RT           V+ L     G+    + VYVDDL++ G    +D++ H    L  +F +KDLG L
Sbjct:   28 LPPDKKAIRCKWIFKTKHHVDGSVERYKARLVAQGFTQTEGVDYMETFSPVVKMTTIRTPPGLNISDPTLVYKLQKSIYGLKQATILVYVDDLILTGT--SIDQIIHTKTVLHNKFSIKDLGEL 149          
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: UPI001B3556EB (LOW QUALITY PROTEIN: uncharacterized protein LOC100794549 n=1 Tax=Glycine max TaxID=3847 RepID=UPI001B3556EB)

HSP 1 Score: 95.9 bits (237), Expect = 7.990e-19
Identity = 68/233 (29.18%), Postives = 109/233 (46.78%), Query Frame = 0
Query:    5 QQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLNMEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANP--------FG---------------------EEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAE 208
            ++R KLDDK+   +F GYD  S  Y++Y   ++ +  SR+V FDEED       + ++D     E+      +   +   H     +  P  ++ +S+ + P +     +   + N         FG                     EE K++ K  T E      LP G KAI  +W++K K      V RYKA+LVA+G+S+ +G+D+ E  APVAR+ T+R +  LAA+
Sbjct: 1187 EKRTKLDDKSEKYVFVGYDSRSKGYKLYNPNSRKIVISRDVEFDEEDCWDWSVQEDKYDFLPYFEEDDE---IEQPIIEEHITPPASPTPRLDETSSSERTPRLRSIEEIYEVTTNLNDINLFCLFGDCEPLSYQEAAENIKWKDAMDEEIKSITKNDTWELTT---LPRGHKAIGVRWVYKAKKNAKGDVERYKARLVAKGYSQRQGIDYDEVFAPVARLETIRLIISLAAQ 1413          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A445G8E4_GLYSO7.110e-2232.80Retrovirus-related Pol polyprotein from transposon... [more]
A0A438E8Q2_VITVI1.940e-2031.85Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J5YMD5_9ROSI8.200e-2033.18Integrase catalytic domain-containing protein n=1 ... [more]
Q53MQ5_ORYSJ2.280e-1929.50Retrotransposon protein, putative, Ty1-copia subcl... [more]
A0A5C3E5T1_9BASI2.310e-1932.56Uncharacterized protein n=2 Tax=Ustilago trichopho... [more]
A0A6D2JCN6_9BRAS2.460e-1944.20Integrase catalytic domain-containing protein n=1 ... [more]
A0A438BNH9_VITVI2.740e-1937.04Retrovirus-related Pol polyprotein from transposon... [more]
A0A8J6CTJ0_9ROSI5.600e-1930.61Integrase catalytic domain-containing protein n=1 ... [more]
UPI00092F96E36.000e-1945.16uncharacterized protein LOC109344675 n=1 Tax=Lupin... [more]
UPI001B3556EB7.990e-1929.18LOW QUALITY PROTEIN: uncharacterized protein LOC10... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 143..210
e-value: 1.6E-15
score: 57.4
NoneNo IPR availablePANTHERPTHR11439:SF265coord: 143..207
coord: 5..59
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 143..207
coord: 5..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig41270contigH-paniculata_contig41270:84..1436 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig41270.10620.1mRNA_H-paniculata_contig41270.10620.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig41270 78..1436 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig41270.10620.1 ID=prot_H-paniculata_contig41270.10620.1|Name=mRNA_H-paniculata_contig41270.10620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp
MFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEE
DFVTGHRGQQEHDGTLNMEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRT
SASQMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAI
RTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLR
TVFCLAAEQTGILVAVYVDDLVIAGRREKVDELKHNLSRRFRMKDLGSL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like