mRNA_H-paniculata_contig41270.10620.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
|
Overview
Homology
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A8J5YMD5_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YMD5_9ROSI) HSP 1 Score: 102 bits (254), Expect = 4.100e-21 Identity = 73/222 (32.88%), Postives = 113/222 (50.90%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLN--MEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEE-W--------KALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ 633
Y + +++R KL+ ++ G+F GY YRI+ K + SR+V+F+EE G + DGT +E+ ++P + P + AE + P RT A T P+ A EE W K + K T E + P +K I KW+F+ K D + ++KA+LV +G+S+ +GVDFFET APVAR+ T+R +F LAA++
Sbjct: 165 YALVPAEKRTKLEKRSMPGVFVGYSRVKKGYRIFDPLTKKIIVSRDVKFNEE-------GYWKWDGTNASLLEEDQNSPDLQPPEIEAEAEDDYDDAPIRGTRTLADIYERCAMTIVEPSCYAKAVKEECWQEAMEAELKMIQKNDTWELVN---RPENRKVIGVKWVFRTKTNSDGFLNKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRFLFALAAQK 376
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A8J6CTJ0_9ROSI (Integrase catalytic domain-containing protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J6CTJ0_9ROSI) HSP 1 Score: 100 bits (248), Expect = 2.810e-20 Identity = 76/250 (30.40%), Postives = 121/250 (48.40%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLN--MEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGE---------EWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQTGILVAVYVDDLVIAGRREKVDELKHNL 717
Y + ++++ KL+ ++ G+F GY YRI+ K + SR+V+F+EE G + DGT +E+ ++P + P + AE + P R A T P+ A + E K + K T E + P +K I KW+F+ K D S+ ++KA+LV +G+S+ +GVDFFET APVAR+ T+R +F LAA++ + ++G KV LK L
Sbjct: 509 YALVPAEKKTKLEKRSIPGVFVGYSSVKKGYRIFDPLTKKIIVSRDVKFNEE-------GYWKWDGTNASLLEEDQNSPDLQPTEIEAEAEDDYDDAPIRGTRILADIYERCAMTLVEPSCYAEAVKDKCWQEAMEAELKMIQKNDTWELVN---RPENRKVIGVKWVFRTKTNSDGSLKKHKARLVVKGYSQQQGVDFFETFAPVARLDTIRLLFTLAAQKQW-----KPEGFEVSGEEHKVYRLKKAL 743
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A5C3E5T1_9BASI (Uncharacterized protein n=2 Tax=Ustilago trichophora TaxID=86804 RepID=A0A5C3E5T1_9BASI) HSP 1 Score: 99.0 bits (245), Expect = 7.200e-20 Identity = 70/223 (31.39%), Postives = 107/223 (47.98%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDF----VTGHRGQQEHDGTLNMEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEEWKALVKK--------GTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ 633
++ +R+KLD ++ IF G+ E ++ SR+V FDE+ F V E D + L + P P+ H + V D ++ P ++ A P W+ +KK GT ED LP G++A+ +KW+FK KLK D +V +YKA+LVAQGF++ GVD+ ET APV + +TLR + LAA++
Sbjct: 718 WIRVPEDRRQKLDARSAPYIFIGFQEGVKGVKVLHPIKMRSTFSRDVVFDEDTFGIPEVEADAFPDEDDEEAQVNALLNPAPTVPSTDDHHDADDDEEV----DFALSAHGPQDQEPKTIEEAKRRPDWPHWETAIKKELASLSENGTWTLED---LPPGRRAVGSKWVFKIKLKADGTVDKYKARLVAQGFTQQHGVDYDETFAPVLKFATLRLLIALAAQE 933
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A8J5YXK5_9ROSI (Uncharacterized protein n=1 Tax=Gossypium anomalum TaxID=47600 RepID=A0A8J5YXK5_9ROSI) HSP 1 Score: 98.2 bits (243), Expect = 1.350e-19 Identity = 70/222 (31.53%), Postives = 110/222 (49.55%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLN--MEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGE---------EWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQ 633
Y + +++R KL+ ++ G+F GY YRI+ K + SR+V+F+EE G + DGT +E+ ++P + P + + + P RT A P+ A E E K + K T E + P +K I KW+F+ K D S+ +KA+LV +G+S+ +GVDFFET APVAR+ T+R +F LAA++
Sbjct: 585 YALVPAEKRTKLEKRSMPGVFVGYSSVKKGYRIFDPLTKKIIVSRDVKFNEE-------GYWKWDGTNASLLEEDQNSPDLQPTEIEAEVDDDYDDAPIRGTRTLADIYERCAMIIVEPSCYAEVVKEKCWQEALEAELKMIQKNDTWELVN---RPENRKVIGVKWVFRTKTNSDGSLNEHKARLVVKGYSQQQGVDFFETFAPVARLDTIRFLFALAAQK 796
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A6D2JCN6_9BRAS (Integrase catalytic domain-containing protein n=1 Tax=Microthlaspi erraticum TaxID=1685480 RepID=A0A6D2JCN6_9BRAS) HSP 1 Score: 97.1 bits (240), Expect = 2.580e-19 Identity = 61/138 (44.20%), Postives = 82/138 (59.42%), Query Frame = 1
Query: 376 EEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAA-----------EQTGILVAVYVDDLVIAGRR-EKVDELKHNLSRRFRMKDLGSL 753
EE ++VK T + D LPAG KAI KW+FK K D S+ ++K++LVA+G+ + GVDF E APVAR+ T+R + LAA E+ +LVAVYVDDL++ G E + E K +S F M DLG L
Sbjct: 362 EEISSIVKNKTWDLVD---LPAGAKAIGLKWVFKIKRNSDGSLNKHKSRLVAKGYVQKFGVDFEEVFAPVARIKTIRFLIALAASNGWEIHHLDEEEHILLVAVYVDDLLVTGSSLEMIIEFKRGMSANFEMSDLGKL 496
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A438BNH9_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438BNH9_VITVI) HSP 1 Score: 97.1 bits (240), Expect = 2.890e-19 Identity = 60/162 (37.04%), Postives = 90/162 (55.56%), Query Frame = 1
Query: 316 QMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAAEQTGILVA---------------VYVDDLVIAGR-REKVDELKHNLSRRFRMKDLGSL 753
Q P HS + + E AL K GT D LP G++ + KWIF K K D SV R+KA L+A+GF++ G+D+ ET APVA+++T+R + LA Q +++ VYVDD++++G E++ +LK LS+ F +KDLG+L
Sbjct: 337 QFPTQYKRHSKFQNARRQYKIEIDALEKNGTWTITD---LPVGKRPVGCKWIFTIKYKADGSVERFKAHLLARGFTQSYGIDYQETFAPVAKLNTIRILLSLAVNQDWLIILYLSRNLMPGKMAILIVYVDDIILSGNDMEELQKLKKYLSKEFEVKDLGNL 495
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: UPI00092F96E3 (uncharacterized protein LOC109344675 n=1 Tax=Lupinus angustifolius TaxID=3871 RepID=UPI00092F96E3) HSP 1 Score: 90.9 bits (224), Expect = 6.280e-19 Identity = 56/124 (45.16%), Postives = 75/124 (60.48%), Query Frame = 1
Query: 433 LPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRT-----------VFCLAAEQTGI---LVAVYVDDLVIAGRREKVDELKHN---LSRRFRMKDLGSL 753
LP +KAIR KWIFK K D SV RYKA+LVAQGF++ EGVD+ ET +PV +M+T+RT V+ L G+ + VYVDDL++ G +D++ H L +F +KDLG L
Sbjct: 28 LPPDKKAIRCKWIFKTKHHVDGSVERYKARLVAQGFTQTEGVDYMETFSPVVKMTTIRTPPGLNISDPTLVYKLQKSIYGLKQATILVYVDDLILTGT--SIDQIIHTKTVLHNKFSIKDLGEL 149
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A438CQR1_VITVI (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Vitis vinifera TaxID=29760 RepID=A0A438CQR1_VITVI) HSP 1 Score: 95.5 bits (236), Expect = 9.970e-19 Identity = 86/296 (29.05%), Postives = 137/296 (46.28%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDF---VTGHRGQQEHDGTLNM---EDLFST-----PPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAA---------------------------------EQTGILVAVYVDDLVIAGRR-EKVDELKHNLSRRFRMKDLGSL 753
+V+FQ + KL+ ++ F GYDE YR Y + ++ RNV F E ++ R + L + E L S+ PP+ ++ +A Q + +D ++P P PA +P + + + + + D LP GQ + KWI+K K + D SV RYKA+ VA+GF++ G+D+ ET A VAR+S++R + +AA ++ IL+ +YVDD++I G + ELK LS++F MKDLG L
Sbjct: 250 FVLFQPHEHNKLEPRSRLCCFLGYDETQKGYRCYDPVSHRLRVFRNVVFWEHRLFVKLSHFRFSLTNSSVLEIFPNESLVSSTNTFDPPLDFSLDIFYASPRQVADEQIDD-----ELPHFEPGSPAPALPEDPPQD----IPPRHS--TRDLVTLPPGQSVVGCKWIYKIKTRSDGSVERYKARFVAKGFTQEYGIDYEETFALVARISSVRALLAVAAAPPRAWFAKFNSTIFHLGYTASPYDSALFLRRTDKGTILLLLYVDDMIITGDDLSGIQELKDFLSQQFEMKDLGHL 534
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A4Y2GYT7_ARAVE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Araneus ventricosus TaxID=182803 RepID=A0A4Y2GYT7_ARAVE) HSP 1 Score: 95.1 bits (235), Expect = 1.290e-18 Identity = 74/209 (35.41%), Postives = 100/209 (47.85%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEDFVTGHRGQQEHDGTLNMEDLFSTPPVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPFGEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLAA 627
Y Q Q+RRKLD KA GIF GYD S YRIY+ +NK + SR V+F E + +E L +D + V + H E +RT P + + EE ++L K T + P P+G+K I +W FK K ++ RYKA+LVAQGFS+ G D+ ET APV +T+RT AA
Sbjct: 279 YAYIQKQKRRKLDSKAIEGIFLGYDYRSKGYRIYLGDNK-IMISRTVKFIENPPPYAKKEAKE----LQKQDETTQQLVE--LELEHEENHSMEEGEINERTEMEN--PYEKQKWIESTK-----EEMESLQKNETWKLVTP---PSGKKVIGCRWTFKAKYDSKGNIERYKARLVAQGFSQKFGTDYDETFAPVVTYTTIRTFLAAAA 470
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Match: A0A2Z6MT47_TRISU (Integrase catalytic domain-containing protein n=1 Tax=Trifolium subterraneum TaxID=3900 RepID=A0A2Z6MT47_TRISU) HSP 1 Score: 94.7 bits (234), Expect = 2.040e-18 Identity = 67/219 (30.59%), Postives = 107/219 (48.86%), Query Frame = 1
Query: 1 YVMFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDE-------EDFVTGHRGQQEHDGTLNMEDLFSTP--PVTPAVTRSHAEGEQASVPNTEDRTSASQMPPILPTHSLPAASANPF--GEEWKALVKKGTCESEDPGRLPAGQKAIRTKWIFKRKLKKDDSVARYKAQLVAQGFSKVEGVDFFETSAPVARMSTLRTVFCLA 624
Y++ +QRRK+D K+ GIF GY +S +YR+Y S + + S NV D+ ++ Q + + T ++E+L TP P+T ++G V + P T N F E W + + P G I TKW++K K ++ ++ R KA+LVAQG+++VEG+DF ET APVAR+ ++R + +A
Sbjct: 753 YILIDREQRRKMDPKSDEGIFLGYSTNSRAYRVYNSRTQVMMESMNVVIDDVPSDPKTDESPDAEAFQFQPEETASVEELEVTPDSPITDNTIAPGSKGPSIRVQKNHPKDLIIGNPDEGITTRRNQEELNQFERSEVWDLVPR------------PKGMNVIGTKWVYKNKSDENGTITRNKARLVAQGYTQVEGLDFDETFAPVARLESIRLLLGVA 959 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig41270.10620.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig41270.10620.1 >prot_H-paniculata_contig41270.10620.1 ID=prot_H-paniculata_contig41270.10620.1|Name=mRNA_H-paniculata_contig41270.10620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=249bp MFQSQQRRKLDDKAWAGIFPGYDEDSPSYRIYISENKSVQSSRNVRFDEEback to top mRNA from alignment at H-paniculata_contig41270:78..1436+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig41270.10620.1 ID=mRNA_H-paniculata_contig41270.10620.1|Name=mRNA_H-paniculata_contig41270.10620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1359bp|location=Sequence derived from alignment at H-paniculata_contig41270:78..1436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig41270:78..1436+ >mRNA_H-paniculata_contig41270.10620.1 ID=mRNA_H-paniculata_contig41270.10620.1|Name=mRNA_H-paniculata_contig41270.10620.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1494bp|location=Sequence derived from alignment at H-paniculata_contig41270:78..1436+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |