prot_H-paniculata_contig40807.10535.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig40807.10535.1
Unique Nameprot_H-paniculata_contig40807.10535.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length63
Homology
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.030e-31
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INFLLLISRQGKTRLTKWYQTYSAKEKARTVRE+TSTVLARA KMCNFVEWRDKKIVYKR
Sbjct:    2 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.610e-30
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INFLLL+SRQGKTRLTKWY++Y+AKEKAR VRE+TSTVLARAPKMCNFVEWR+KKI+YKR
Sbjct:    2 INFLLLVSRQGKTRLTKWYESYAAKEKARIVREITSTVLARAPKMCNFVEWRNKKIIYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.000e-27
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            +NFLLL+SRQGKTRLTKWY+ Y++KEKAR VRE+T+ VLAR PKMCNF+EWRDKKIVYKR
Sbjct:    2 LNFLLLVSRQGKTRLTKWYEAYTSKEKARIVREITTLVLARPPKMCNFLEWRDKKIVYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.060e-26
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INFLLL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARAPKMCNF+EWRDKK++YKR
Sbjct:    2 INFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.510e-26
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INF+LLISRQGKTRLTKWY +Y  KEKAR +RE+TS VL R PKMCNF+EW+DKKIVYKR
Sbjct:    2 INFMLLISRQGKTRLTKWYDSYGTKEKARIMREITSMVLNRPPKMCNFIEWKDKKIVYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.850e-25
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTY-SAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INF+LLISRQGKTRLTKWY++Y S KEKAR VRE+T+ VL+R PK+CNF+EWRDKK++YKR
Sbjct:   15 INFMLLISRQGKTRLTKWYESYGSTKEKARIVREITAMVLSRPPKLCNFIEWRDKKVIYKR 75          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.990e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWR-DKKIVYKR 62
            INF+LL+SRQGKTRLTKWY++YS KEKAR VRE  +TVLARAPKMCNF+EWR DKKIVYKR
Sbjct:    2 INFMLLVSRQGKTRLTKWYESYSTKEKARIVRE--ATVLARAPKMCNFIEWRADKKIVYKR 60          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.500e-23
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INF+LL+SRQGKTRL+KW+   +AKEK R VRE+T+TVL+R PKMCNF+EW+DKK++YKR
Sbjct:   19 INFILLVSRQGKTRLSKWFVQMTAKEKTRAVRELTATVLSRPPKMCNFIEWQDKKVIYKR 78          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A0G4J7R0_PLABS (AP complex subunit sigma n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7R0_PLABS)

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-22
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 0
Query:    3 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            INF+LLISRQGK RLTKWY TY+AK+KAR +REV+  VL+R  K CN VEWRD+KIVYKR
Sbjct:    2 INFMLLISRQGKVRLTKWYNTYAAKDKARFIREVSGLVLSRPAKACNVVEWRDEKIVYKR 61          
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A444BY63_ENSVE (AP complex subunit sigma (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444BY63_ENSVE)

HSP 1 Score: 90.9 bits (224), Expect = 7.850e-22
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 0
Query:    2 QINFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 62
            QINF+LLISRQGK RLTKWY  YS KE+++ +RE++  +LAR PK+CNFVEWR  K+VY+R
Sbjct:    1 QINFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGLILARGPKLCNFVEWRGYKVVYRR 61          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI1.030e-3196.67AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4A8C4_9STRA9.610e-3086.67AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A835Z7C9_9STRA3.000e-2780.00AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T3W8_9STRA1.060e-2676.67AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S2XUT6_9STRA7.510e-2678.33AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A7S2SD76_9STRA6.850e-2575.41AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
F0Y8T1_AURAN1.990e-2481.97AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A7S3LZF2_9STRA2.500e-2370.00AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
A0A0G4J7R0_PLABS1.900e-2273.33AP complex subunit sigma n=1 Tax=Plasmodiophora br... [more]
A0A444BY63_ENSVE7.850e-2265.57AP complex subunit sigma (Fragment) n=1 Tax=Ensete... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR022775AP complex, mu/sigma subunitPFAMPF01217Clat_adaptor_scoord: 2..62
e-value: 1.5E-18
score: 67.1
NoneNo IPR availableGENE3D3.30.450.60coord: 2..62
e-value: 1.5E-18
score: 68.9
NoneNo IPR availablePANTHERPTHR11753:SF39coord: 3..62
IPR016635Adaptor protein complex, sigma subunitPANTHERPTHR11753CLATHRIN COAT ASSEMBLY PROTEINcoord: 3..62
IPR011012Longin-like domain superfamilySUPERFAMILY64356SNARE-likecoord: 3..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40807contigH-paniculata_contig40807:117..654 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40807.10535.1mRNA_H-paniculata_contig40807.10535.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig40807 117..654 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig40807.10535.1 ID=prot_H-paniculata_contig40807.10535.1|Name=mRNA_H-paniculata_contig40807.10535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MQINFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNF
VEWRDKKIVYKR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR022775AP_mu_sigma_su
IPR016635AP_complex_ssu
IPR011012Longin-like_dom_sf