mRNA_H-paniculata_contig40807.10535.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig40807.10535.1
Unique NamemRNA_H-paniculata_contig40807.10535.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: D8LBL7_ECTSI (AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LBL7_ECTSI)

HSP 1 Score: 116 bits (290), Expect = 1.030e-31
Identity = 58/60 (96.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INFLLLISRQGKTRLTKWYQTYSAKEKARTVRE+TSTVLARA KMCNFVEWRDKKIVYKR
Sbjct:    2 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREITSTVLARALKMCNFVEWRDKKIVYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S4A8C4_9STRA (AP complex subunit sigma n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A8C4_9STRA)

HSP 1 Score: 111 bits (277), Expect = 9.610e-30
Identity = 52/60 (86.67%), Postives = 59/60 (98.33%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INFLLL+SRQGKTRLTKWY++Y+AKEKAR VRE+TSTVLARAPKMCNFVEWR+KKI+YKR
Sbjct:    2 INFLLLVSRQGKTRLTKWYESYAAKEKARIVREITSTVLARAPKMCNFVEWRNKKIIYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A835Z7C9_9STRA (AP complex subunit sigma n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z7C9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.000e-27
Identity = 48/60 (80.00%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            +NFLLL+SRQGKTRLTKWY+ Y++KEKAR VRE+T+ VLAR PKMCNF+EWRDKKIVYKR
Sbjct:    2 LNFLLLVSRQGKTRLTKWYEAYTSKEKARIVREITTLVLARPPKMCNFLEWRDKKIVYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: W7T3W8_9STRA (AP complex subunit sigma n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7T3W8_9STRA)

HSP 1 Score: 103 bits (257), Expect = 1.060e-26
Identity = 46/60 (76.67%), Postives = 56/60 (93.33%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INFLLL+SRQGKTRL+KWY+ Y+ KEKAR +RE+T+ VLARAPKMCNF+EWRDKK++YKR
Sbjct:    2 INFLLLVSRQGKTRLSKWYKHYTTKEKARAIRELTNLVLARAPKMCNFIEWRDKKVIYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S2XUT6_9STRA (AP complex subunit sigma n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2XUT6_9STRA)

HSP 1 Score: 101 bits (251), Expect = 7.510e-26
Identity = 47/60 (78.33%), Postives = 53/60 (88.33%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INF+LLISRQGKTRLTKWY +Y  KEKAR +RE+TS VL R PKMCNF+EW+DKKIVYKR
Sbjct:    2 INFMLLISRQGKTRLTKWYDSYGTKEKARIMREITSMVLNRPPKMCNFIEWKDKKIVYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S2SD76_9STRA (AP complex subunit sigma n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SD76_9STRA)

HSP 1 Score: 99.4 bits (246), Expect = 6.850e-25
Identity = 46/61 (75.41%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTY-SAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INF+LLISRQGKTRLTKWY++Y S KEKAR VRE+T+ VL+R PK+CNF+EWRDKK++YKR
Sbjct:   15 INFMLLISRQGKTRLTKWYESYGSTKEKARIVREITAMVLSRPPKLCNFIEWRDKKVIYKR 75
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: F0Y8T1_AURAN (AP complex subunit sigma n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y8T1_AURAN)

HSP 1 Score: 98.2 bits (243), Expect = 1.990e-24
Identity = 50/61 (81.97%), Postives = 56/61 (91.80%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWR-DKKIVYKR 186
            INF+LL+SRQGKTRLTKWY++YS KEKAR VRE  +TVLARAPKMCNF+EWR DKKIVYKR
Sbjct:    2 INFMLLVSRQGKTRLTKWYESYSTKEKARIVRE--ATVLARAPKMCNFIEWRADKKIVYKR 60
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A7S3LZF2_9STRA (AP complex subunit sigma n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3LZF2_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 2.500e-23
Identity = 42/60 (70.00%), Postives = 54/60 (90.00%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INF+LL+SRQGKTRL+KW+   +AKEK R VRE+T+TVL+R PKMCNF+EW+DKK++YKR
Sbjct:   19 INFILLVSRQGKTRLSKWFVQMTAKEKTRAVRELTATVLSRPPKMCNFIEWQDKKVIYKR 78
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A0G4J7R0_PLABS (AP complex subunit sigma n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4J7R0_PLABS)

HSP 1 Score: 92.4 bits (228), Expect = 1.900e-22
Identity = 44/60 (73.33%), Postives = 51/60 (85.00%), Query Frame = 1 
Query:    7 INFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            INF+LLISRQGK RLTKWY TY+AK+KAR +REV+  VL+R  K CN VEWRD+KIVYKR
Sbjct:    2 INFMLLISRQGKVRLTKWYNTYAAKDKARFIREVSGLVLSRPAKACNVVEWRDEKIVYKR 61
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BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Match: A0A444BY63_ENSVE (AP complex subunit sigma (Fragment) n=1 Tax=Ensete ventricosum TaxID=4639 RepID=A0A444BY63_ENSVE)

HSP 1 Score: 90.9 bits (224), Expect = 7.850e-22
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 1 
Query:    4 QINFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNFVEWRDKKIVYKR 186
            QINF+LLISRQGK RLTKWY  YS KE+++ +RE++  +LAR PK+CNFVEWR  K+VY+R
Sbjct:    1 QINFVLLISRQGKVRLTKWYSPYSQKERSKVIRELSGLILARGPKLCNFVEWRGYKVVYRR 61
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40807.10535.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LBL7_ECTSI1.030e-3196.67AP complex subunit sigma n=2 Tax=Ectocarpus TaxID=... [more]
A0A7S4A8C4_9STRA9.610e-3086.67AP complex subunit sigma n=1 Tax=Pelagomonas calce... [more]
A0A835Z7C9_9STRA3.000e-2780.00AP complex subunit sigma n=1 Tax=Tribonema minus T... [more]
W7T3W8_9STRA1.060e-2676.67AP complex subunit sigma n=2 Tax=Monodopsidaceae T... [more]
A0A7S2XUT6_9STRA7.510e-2678.33AP complex subunit sigma n=1 Tax=Fibrocapsa japoni... [more]
A0A7S2SD76_9STRA6.850e-2575.41AP complex subunit sigma n=1 Tax=Rhizochromulina m... [more]
F0Y8T1_AURAN1.990e-2481.97AP complex subunit sigma n=1 Tax=Aureococcus anoph... [more]
A0A7S3LZF2_9STRA2.500e-2370.00AP complex subunit sigma n=1 Tax=Spumella elongata... [more]
A0A0G4J7R0_PLABS1.900e-2273.33AP complex subunit sigma n=1 Tax=Plasmodiophora br... [more]
A0A444BY63_ENSVE7.850e-2265.57AP complex subunit sigma (Fragment) n=1 Tax=Ensete... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig40807contigH-paniculata_contig40807:117..654 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.2
Seed ortholog evalue1.3e-24
Seed eggNOG ortholog2880.D8LBL7
Preferred nameAP1S2
KEGG koko:K12394,ko:K12395
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0000139,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001745,GO:0001751,GO:0001754,GO:0002376,GO:0002478,GO:0002495,GO:0002504,GO:0003008,GO:0003674,GO:0005215,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005765,GO:0005768,GO:0005773,GO:0005774,GO:0005794,GO:0005798,GO:0005802,GO:0005829,GO:0005886,GO:0005905,GO:0006605,GO:0006810,GO:0006886,GO:0006892,GO:0006896,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0007034,GO:0007275,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007610,GO:0007611,GO:0007612,GO:0007632,GO:0008104,GO:0008150,GO:0008306,GO:0008542,GO:0008565,GO:0009314,GO:0009416,GO:0009605,GO:0009607,GO:0009615,GO:0009628,GO:0009653,GO:0009887,GO:0009888,GO:0009987,GO:0012505,GO:0012506,GO:0012510,GO:0015031,GO:0015833,GO:0016020,GO:0016032,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019882,GO:0019884,GO:0019886,GO:0022008,GO:0030030,GO:0030117,GO:0030118,GO:0030119,GO:0030120,GO:0030121,GO:0030122,GO:0030125,GO:0030128,GO:0030130,GO:0030131,GO:0030132,GO:0030133,GO:0030135,GO:0030136,GO:0030139,GO:0030140,GO:0030154,GO:0030182,GO:0030276,GO:0030424,GO:0030658,GO:0030659,GO:0030660,GO:0030662,GO:0030665,GO:0030666,GO:0030669,GO:0031090,GO:0031175,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0032588,GO:0032989,GO:0032990,GO:0032991,GO:0033036,GO:0033267,GO:0034613,GO:0036465,GO:0040011,GO:0042051,GO:0042147,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042886,GO:0042995,GO:0043005,GO:0043195,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043679,GO:0044306,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044456,GO:0044459,GO:0044463,GO:0044464,GO:0045176,GO:0045184,GO:0045202,GO:0045334,GO:0045444,GO:0046530,GO:0046907,GO:0048002,GO:0048193,GO:0048468,GO:0048475,GO:0048513,GO:0048592,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0050690,GO:0050877,GO:0050885,GO:0050890,GO:0050896,GO:0050905,GO:0051179,GO:0051234,GO:0051641,GO:0051649,GO:0051704,GO:0051707,GO:0060612,GO:0061448,GO:0061564,GO:0070727,GO:0071702,GO:0071705,GO:0071840,GO:0071944,GO:0090596,GO:0097458,GO:0097485,GO:0097708,GO:0098588,GO:0098657,GO:0098791,GO:0098793,GO:0098796,GO:0098797,GO:0098805,GO:0098852,GO:0099504,GO:0120025,GO:0120036,GO:0120038,GO:0120039,GO:0150034
EggNOG free text desc.protein transport
EggNOG OGsCOG5030@1,KOG0934@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko04131
Exons2
Model size189
Cds size189
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.8133059-CDS-H-paniculata_contig40807:116..2241622930247.8133059-CDS-H-paniculata_contig40807:116..224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40807 117..224 -
1691481209.1241667-CDS-H-paniculata_contig40807:116..2241691481209.1241667-CDS-H-paniculata_contig40807:116..224Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40807 117..224 -
1622930247.94428-CDS-H-paniculata_contig40807:573..6541622930247.94428-CDS-H-paniculata_contig40807:573..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40807 574..654 -
1691481209.1350489-CDS-H-paniculata_contig40807:573..6541691481209.1350489-CDS-H-paniculata_contig40807:573..654Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig40807 574..654 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig40807.10535.1prot_H-paniculata_contig40807.10535.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig40807 117..654 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig40807.10535.1

>prot_H-paniculata_contig40807.10535.1 ID=prot_H-paniculata_contig40807.10535.1|Name=mRNA_H-paniculata_contig40807.10535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=63bp
MQINFLLLISRQGKTRLTKWYQTYSAKEKARTVREVTSTVLARAPKMCNF
VEWRDKKIVYKR*
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mRNA from alignment at H-paniculata_contig40807:117..654-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig40807.10535.1 ID=mRNA_H-paniculata_contig40807.10535.1|Name=mRNA_H-paniculata_contig40807.10535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=538bp|location=Sequence derived from alignment at H-paniculata_contig40807:117..654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATTAACTTCTTGCTGCTGATCAGCCGACAAGGCAAGACCCGACT
AACGAAGTGGTACCAAACCTACTCGGCGAAGGTGTGAAGATTTGATAGAT
GCATTCGTCTCGTCCTTGTACCTTCCATATATGGAGGTACCGAAGGCTTT
TTTGGGTGCTTTGAAACGAAAACATGATGAGTTCTCGACACAGGAAGTCA
TTCGATGGTTTGGGGATTTGCTGCGCTGTATCCAGCCCCTTCCCTCCTAA
GAACAAATGGGTGAATAAATGAAAAAAAAGGCAATCGGTGTGTAGAGGTG
TGTAGAGGTGGGGCGGAGGATGATGCTTGTTTGATGTCGTGGGTAGATGT
AGGTTTCACTTGGGTGCTCATTACGTGCGGTCCTGTTGTTGTTGTTGTTT
CCTGTTTTTACTCCGCTGTCGCCGGTGCAGGAGAAAGCGCGTACCGTTCG
AGAGGTTACCTCCACGGTGCTGGCACGCGCGCCTAAGATGTGCAATTTCG
TCGAGTGGCGAGACAAGAAGATCGTGTACAAGAGGTAA
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Coding sequence (CDS) from alignment at H-paniculata_contig40807:117..654-

>mRNA_H-paniculata_contig40807.10535.1 ID=mRNA_H-paniculata_contig40807.10535.1|Name=mRNA_H-paniculata_contig40807.10535.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=378bp|location=Sequence derived from alignment at H-paniculata_contig40807:117..654- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGCAGATTAACTTCTTGCTGCTGATCAGCCGACAAGGCAAGACCCGACT
AACGAAGTGGTACCAAACCTACTCGGCGAAGATGCAGATTAACTTCTTGC
TGCTGATCAGCCGACAAGGCAAGACCCGACTAACGAAGTGGTACCAAACC
TACTCGGCGAAGGAGAAAGCGCGTACCGTTCGAGAGGTTACCTCCACGGT
GCTGGCACGCGCGCCTAAGATGTGCAATTTCGTCGAGTGGCGAGACAAGA
AGATCGTGTACAAGAGGTAAGAGAAAGCGCGTACCGTTCGAGAGGTTACC
TCCACGGTGCTGGCACGCGCGCCTAAGATGTGCAATTTCGTCGAGTGGCG
AGACAAGAAGATCGTGTACAAGAGGTAA
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