prot_H-paniculata_contig4080.10532.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_H-paniculata_contig4080.10532.1
Unique Nameprot_H-paniculata_contig4080.10532.1
Typepolypeptide
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length102
Homology
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.290e-21
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 0
Query:    4 GEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 96
            G ++  T APVA + T+R IL++A   D EL+ MDVD AYL + +EE++ +K PP          E V  LHKSLYGLKQSG NW+  +D +  G G   S+T
Sbjct:   35 GYEYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSST 137          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE)

HSP 1 Score: 90.9 bits (224), Expect = 7.350e-21
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR--------RLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 95
            Q++G+D+  T +PV    +LR +LS+A +++ ++E MDV  AYL   +EEE+ +  PPE +         RLHK++YGLKQSG+ WNN +D  L  +GL++S+
Sbjct:   53 QIQGQDYQDTFSPVVKYASLRYLLSLAVQNNLDIEHMDVKTAYLYGDIEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSS 155          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.230e-19
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 0
Query:    6 DFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 95
            D+  T APVA M  +R IL++A   D EL+ MDVD AYL + +EE++ +K PP          E + RLHKSLYGLKQSG+NW+  +D++  G     S+
Sbjct:   95 DYLHTYAPVASMTRIRLILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSS 194          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 87.0 bits (214), Expect = 6.750e-18
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQR 93
            Q EG D+F+T APVA   + R IL++ AE D  L  MD  +A+LN P+ E++ ++ PP F      V +L KS+YGLKQSG+NWN  L+  L   GL+R
Sbjct:   19 QREGIDYFETFAPVAKYTSFRYILALTAEMDLHLTQMDAVSAFLNGPLNEDVYMEQPPNFEDKSNRVCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKR 117          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2I0LF58_PUNGR (Uncharacterized protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0LF58_PUNGR)

HSP 1 Score: 86.3 bits (212), Expect = 1.560e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 94
            QVEG DF +T APVA ++T+R +L+VA    +E+  MDV  A+L+  ++EE+ ++LPP F       V RL KSLYGL+Q+ +NW +   D L G G  +S
Sbjct:  870 QVEGIDFHETFAPVAKLVTVRCLLTVAVARGWEMHQMDVQNAFLHGNLDEEVYMRLPPGFFSRRKEVVCRLRKSLYGLRQASRNWYSKFADALRGYGFHQS 970          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3KXP2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KXP2_TRIPR)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-17
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR-------RLHKSLYGLKQSGQNW 78
            QVEG D+F T APVA ++T+R +LSVAA  ++ L  +DV+ A+L+  + E++ ++LPP F R       +LHKSLYGLKQ+ +NW
Sbjct:   39 QVEGIDYFDTFAPVAKLVTVRVLLSVAAGKNWPLHQLDVNNAFLHGDLHEDVYMQLPPGFRRQGEPLVCKLHKSLYGLKQASRNW 123          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3N4Z1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N4Z1_TRIPR)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-17
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 94
            QVEG ++ +T APVA M+T+RT+L+VAA  D+EL  MDV   +L+  + EE+ +K+PP F       V +LHKSLYGLKQ+ + W   L   L   G Q+S
Sbjct:   65 QVEGVNYTETFAPVAKMVTVRTVLAVAAAKDWELHQMDVHNXFLHGDLHEEVFMKMPPGFSTSEQNMVCKLHKSLYGLKQAPRCWFAKLSAALKSYGFQQS 165          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2P6QR46_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QR46_ROSCH)

HSP 1 Score: 85.9 bits (211), Expect = 1.990e-17
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP--------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 94
            Q  G D+ +T APVA M T+R +LSVA  H + L  MDV  A+L+  +EEE+ +KLPP        E V +LHKS+YGLKQS + W   L   L  +G QRS
Sbjct:   98 QTYGVDYKETFAPVAKMSTVRVLLSVAVNHAWPLYQMDVKNAFLHGDLEEEVYMKLPPGHPQSHDLEIVCKLHKSIYGLKQSPRAWYAKLSSVLEEVGFQRS 199          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A1A8UYT1_NOTFU (Uncharacterized protein n=5 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8UYT1_NOTFU)

HSP 1 Score: 85.5 bits (210), Expect = 2.940e-17
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 96
            QV+G D+++T +P A + +LR ++ +AA+H+ +L  MDV AAYL+AP++ E+ ++ P  F          V +L+KS+YGLKQSG+NWN  L   L   G  +S T
Sbjct:  926 QVQGVDYYETFSPTANLTSLRVLMQLAAQHNLKLHQMDVKAAYLHAPIDCEVYMEQPQGFHEGPKGERKMVWKLNKSIYGLKQSGRNWNQMLHGSLIKNGFVQSAT 1031          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A7D9DFN2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DFN2_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 3.530e-17
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 0
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 94
            QV+G D+ +T AP A + ++R ++ +A +HD  +  MDV  AYL+AP+ +EL I  P  F          V RL KSLYGLKQSG+NWN  L + LA  G  R+
Sbjct:  142 QVKGIDYQETFAPTASITSIRVLMQLAVKHDLIVHQMDVKTAYLHAPITQELYIDQPQGFEEVSESGERLVYRLKKSLYGLKQSGRNWNILLHEHLANDGFVRN 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T9Y7_9STRA4.290e-2145.63Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
A0A0A9X2C2_LYGHE7.350e-2141.75Retrovirus-related Pol polyprotein from transposon... [more]
W7TJI6_9STRA4.230e-1945.00Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
A0A4Q3EC79_9SPHI6.750e-1846.46Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A2I0LF58_PUNGR1.560e-1744.55Uncharacterized protein (Fragment) n=1 Tax=Punica ... [more]
A0A2K3KXP2_TRIPR1.760e-1748.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3N4Z1_TRIPR1.930e-1746.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6QR46_ROSCH1.990e-1747.06Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A1A8UYT1_NOTFU2.940e-1741.51Uncharacterized protein n=5 Tax=Nothobranchius Tax... [more]
A0A7D9DFN2_PARCT3.530e-1744.23Reverse transcriptase Ty1/copia-type domain-contai... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013103Reverse transcriptase, RNA-dependent DNA polymerasePFAMPF07727RVT_2coord: 1..96
e-value: 1.7E-20
score: 73.7
NoneNo IPR availablePANTHERPTHR11439:SF273coord: 1..89
IPR039537Retrotransposon Ty1/copia-likePANTHERPTHR11439GAG-POL-RELATED RETROTRANSPOSONcoord: 1..89

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4080contigH-paniculata_contig4080:5173..5478 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4080.10532.1mRNA_H-paniculata_contig4080.10532.1Halopteris paniculata Hal_grac_a_UBK monoicousmRNAH-paniculata_contig4080 5173..5478 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_H-paniculata_contig4080.10532.1 ID=prot_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEE
ELLIKLPPEFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTTFLAQ
T*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013103RVT_2
IPR039537Retrotran_Ty1/copia-like