mRNA_H-paniculata_contig4080.10532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4080.10532.1
Unique NamemRNA_H-paniculata_contig4080.10532.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA)

HSP 1 Score: 91.3 bits (225), Expect = 4.290e-21
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query:   10 GEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 288
            G ++  T APVA + T+R IL++A   D EL+ MDVD AYL + +EE++ +K PP          E V  LHKSLYGLKQSG NW+  +D +  G G   S+T
Sbjct:   35 GYEYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSST 137          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE)

HSP 1 Score: 90.9 bits (224), Expect = 7.350e-21
Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR--------RLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 285
            Q++G+D+  T +PV    +LR +LS+A +++ ++E MDV  AYL   +EEE+ +  PPE +         RLHK++YGLKQSG+ WNN +D  L  +GL++S+
Sbjct:   53 QIQGQDYQDTFSPVVKYASLRYLLSLAVQNNLDIEHMDVKTAYLYGDIEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSS 155          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 4.230e-19
Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query:   16 DFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 285
            D+  T APVA M  +R IL++A   D EL+ MDVD AYL + +EE++ +K PP          E + RLHKSLYGLKQSG+NW+  +D++  G     S+
Sbjct:   95 DYLHTYAPVASMTRIRLILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSS 194          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI)

HSP 1 Score: 87.0 bits (214), Expect = 6.750e-18
Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQR 279
            Q EG D+F+T APVA   + R IL++ AE D  L  MD  +A+LN P+ E++ ++ PP F      V +L KS+YGLKQSG+NWN  L+  L   GL+R
Sbjct:   19 QREGIDYFETFAPVAKYTSFRYILALTAEMDLHLTQMDAVSAFLNGPLNEDVYMEQPPNFEDKSNRVCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKR 117          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2I0LF58_PUNGR (Uncharacterized protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0LF58_PUNGR)

HSP 1 Score: 86.3 bits (212), Expect = 1.560e-17
Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
            QVEG DF +T APVA ++T+R +L+VA    +E+  MDV  A+L+  ++EE+ ++LPP F       V RL KSLYGL+Q+ +NW +   D L G G  +S
Sbjct:  870 QVEGIDFHETFAPVAKLVTVRCLLTVAVARGWEMHQMDVQNAFLHGNLDEEVYMRLPPGFFSRRKEVVCRLRKSLYGLRQASRNWYSKFADALRGYGFHQS 970          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3KXP2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KXP2_TRIPR)

HSP 1 Score: 81.3 bits (199), Expect = 1.760e-17
Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR-------RLHKSLYGLKQSGQNW 234
            QVEG D+F T APVA ++T+R +LSVAA  ++ L  +DV+ A+L+  + E++ ++LPP F R       +LHKSLYGLKQ+ +NW
Sbjct:   39 QVEGIDYFDTFAPVAKLVTVRVLLSVAAGKNWPLHQLDVNNAFLHGDLHEDVYMQLPPGFRRQGEPLVCKLHKSLYGLKQASRNW 123          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3N4Z1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N4Z1_TRIPR)

HSP 1 Score: 85.9 bits (211), Expect = 1.930e-17
Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
            QVEG ++ +T APVA M+T+RT+L+VAA  D+EL  MDV   +L+  + EE+ +K+PP F       V +LHKSLYGLKQ+ + W   L   L   G Q+S
Sbjct:   65 QVEGVNYTETFAPVAKMVTVRTVLAVAAAKDWELHQMDVHNXFLHGDLHEEVFMKMPPGFSTSEQNMVCKLHKSLYGLKQAPRCWFAKLSAALKSYGFQQS 165          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2P6QR46_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QR46_ROSCH)

HSP 1 Score: 85.9 bits (211), Expect = 1.990e-17
Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP--------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
            Q  G D+ +T APVA M T+R +LSVA  H + L  MDV  A+L+  +EEE+ +KLPP        E V +LHKS+YGLKQS + W   L   L  +G QRS
Sbjct:   98 QTYGVDYKETFAPVAKMSTVRVLLSVAVNHAWPLYQMDVKNAFLHGDLEEEVYMKLPPGHPQSHDLEIVCKLHKSIYGLKQSPRAWYAKLSSVLEEVGFQRS 199          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A1A8UYT1_NOTFU (Uncharacterized protein n=5 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8UYT1_NOTFU)

HSP 1 Score: 85.5 bits (210), Expect = 2.940e-17
Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 288
            QV+G D+++T +P A + +LR ++ +AA+H+ +L  MDV AAYL+AP++ E+ ++ P  F          V +L+KS+YGLKQSG+NWN  L   L   G  +S T
Sbjct:  926 QVQGVDYYETFSPTANLTSLRVLMQLAAQHNLKLHQMDVKAAYLHAPIDCEVYMEQPQGFHEGPKGERKMVWKLNKSIYGLKQSGRNWNQMLHGSLIKNGFVQSAT 1031          
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A7D9DFN2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DFN2_PARCT)

HSP 1 Score: 84.0 bits (206), Expect = 3.530e-17
Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query:    1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
            QV+G D+ +T AP A + ++R ++ +A +HD  +  MDV  AYL+AP+ +EL I  P  F          V RL KSLYGLKQSG+NWN  L + LA  G  R+
Sbjct:  142 QVKGIDYQETFAPTASITSIRVLMQLAVKHDLIVHQMDVKTAYLHAPITQELYIDQPQGFEEVSESGERLVYRLKKSLYGLKQSGRNWNILLHEHLANDGFVRN 245          
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
W7T9Y7_9STRA4.290e-2145.63Retrotransposon ty1-copia subclass n=1 Tax=Nannoch... [more]
A0A0A9X2C2_LYGHE7.350e-2141.75Retrovirus-related Pol polyprotein from transposon... [more]
W7TJI6_9STRA4.230e-1945.00Retrotransposon ty1-copia subclass n=2 Tax=Nannoch... [more]
A0A4Q3EC79_9SPHI6.750e-1846.46Transposon Pol polyprotein (Fragment) n=1 Tax=Sphi... [more]
A0A2I0LF58_PUNGR1.560e-1744.55Uncharacterized protein (Fragment) n=1 Tax=Punica ... [more]
A0A2K3KXP2_TRIPR1.760e-1748.24Retrovirus-related Pol polyprotein from transposon... [more]
A0A2K3N4Z1_TRIPR1.930e-1746.53Retrovirus-related Pol polyprotein from transposon... [more]
A0A2P6QR46_ROSCH1.990e-1747.06Putative RNA-directed DNA polymerase n=1 Tax=Rosa ... [more]
A0A1A8UYT1_NOTFU2.940e-1741.51Uncharacterized protein n=5 Tax=Nothobranchius Tax... [more]
A0A7D9DFN2_PARCT3.530e-1744.23Reverse transcriptase Ty1/copia-type domain-contai... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4080contigH-paniculata_contig4080:5173..5478 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score85.9
Seed ortholog evalue1.2e-14
Seed eggNOG ortholog15368.BRADI1G31490.1
KEGG koko:K20093
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Mitochondrial protein
EggNOG OGs37THH@33090,3GG2K@35493,COG2801@1,KOG0017@2759
EC3.6.4.12
COG Functional cat.O
Best tax levelStreptophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03036
Exons1
Model size306
Cds size306
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930247.6937113-CDS-H-paniculata_contig4080:5172..54781622930247.6937113-CDS-H-paniculata_contig4080:5172..5478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 5173..5478 +
1691481209.0994844-CDS-H-paniculata_contig4080:5172..54781691481209.0994844-CDS-H-paniculata_contig4080:5172..5478Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4080 5173..5478 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4080.10532.1prot_H-paniculata_contig4080.10532.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4080 5173..5478 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4080.10532.1

>prot_H-paniculata_contig4080.10532.1 ID=prot_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp
QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEE
ELLIKLPPEFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTTFLAQ
T*
back to top

mRNA from alignment at H-paniculata_contig4080:5173..5478+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4080.10532.1 ID=mRNA_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4080:5173..5478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGAGGGTGAAGATTTCTTTAAAACCAGTGCCCCCGTAGCTCTCAT GTTGACTTTACGTACTATTCTTAGCGTGGCCGCCGAACATGATTTCGAAT TAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCCGTAGAAGAA GAACTGTTGATTAAGCTACCCCCCGAGTTTGTGCGCCGCCTGCATAAAAG CCTGTACGGCCTCAAGCAGAGCGGTCAAAACTGGAATAACAATCTTGACG ATTTTCTTGCTGGGATAGGACTTCAACGTTCCACTACTTTCCTCGCACAA ACGTAA
back to top

Coding sequence (CDS) from alignment at H-paniculata_contig4080:5173..5478+

>mRNA_H-paniculata_contig4080.10532.1 ID=mRNA_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4080:5173..5478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CAGGTGGAGGGTGAAGATTTCTTTAAAACCAGTGCCCCCGTAGCTCTCAT
GTTGACTTTACGTACTATTCTTAGCGTGGCCGCCGAACATGATTTCGAAT
TAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCCGTAGAAGAA
GAACTGTTGATTAAGCTACCCCCCGAGTTTGTGCGCCGCCTGCATAAAAG
CCTGTACGGCCTCAAGCAGAGCGGTCAAAACTGGAATAACAATCTTGACG
ATTTTCTTGCTGGGATAGGACTTCAACGTTCCACTACTTTCCTCGCACAA
ACGTAACAGGTGGAGGGTGAAGATTTCTTTAAAACCAGTGCCCCCGTAGC
TCTCATGTTGACTTTACGTACTATTCTTAGCGTGGCCGCCGAACATGATT
TCGAATTAGAAGGCATGGACGTAGATGCGGCGTATTTGAACGCCCCCGTA
GAAGAAGAACTGTTGATTAAGCTACCCCCCGAGTTTGTGCGCCGCCTGCA
TAAAAGCCTGTACGGCCTCAAGCAGAGCGGTCAAAACTGGAATAACAATC
TTGACGATTTTCTTGCTGGGATAGGACTTCAACGTTCCACTACTTTCCTC
GCACAAACGTAA
back to top