mRNA_H-paniculata_contig4080.10532.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7T9Y7_9STRA (Retrotransposon ty1-copia subclass n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T9Y7_9STRA) HSP 1 Score: 91.3 bits (225), Expect = 4.290e-21 Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 10 GEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 288
G ++ T APVA + T+R IL++A D EL+ MDVD AYL + +EE++ +K PP E V LHKSLYGLKQSG NW+ +D + G G S+T
Sbjct: 35 GYEYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELVCLLHKSLYGLKQSGINWHKKIDGWFRGYGFHSSST 137
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A0A9X2C2_LYGHE (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9X2C2_LYGHE) HSP 1 Score: 90.9 bits (224), Expect = 7.350e-21 Identity = 43/103 (41.75%), Postives = 68/103 (66.02%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR--------RLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 285
Q++G+D+ T +PV +LR +LS+A +++ ++E MDV AYL +EEE+ + PPE + RLHK++YGLKQSG+ WNN +D L +GL++S+
Sbjct: 53 QIQGQDYQDTFSPVVKYASLRYLLSLAVQNNLDIEHMDVKTAYLYGDIEEEIYVLPPPELLEPAENGKVWRLHKAMYGLKQSGRCWNNKIDSVLRELGLKQSS 155
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: W7TJI6_9STRA (Retrotransposon ty1-copia subclass n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJI6_9STRA) HSP 1 Score: 87.8 bits (216), Expect = 4.230e-19 Identity = 45/100 (45.00%), Postives = 62/100 (62.00%), Query Frame = 1
Query: 16 DFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP----------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRST 285
D+ T APVA M +R IL++A D EL+ MDVD AYL + +EE++ +K PP E + RLHKSLYGLKQSG+NW+ +D++ G S+
Sbjct: 95 DYLHTYAPVASMTRIRLILALACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQYGPNGEELLCRLHKSLYGLKQSGRNWHKKIDEWFRGYCFHSSS 194
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A4Q3EC79_9SPHI (Transposon Pol polyprotein (Fragment) n=1 Tax=Sphingobacteriaceae bacterium TaxID=2021370 RepID=A0A4Q3EC79_9SPHI) HSP 1 Score: 87.0 bits (214), Expect = 6.750e-18 Identity = 46/99 (46.46%), Postives = 63/99 (63.64%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQR 279
Q EG D+F+T APVA + R IL++ AE D L MD +A+LN P+ E++ ++ PP F V +L KS+YGLKQSG+NWN L+ L GL+R
Sbjct: 19 QREGIDYFETFAPVAKYTSFRYILALTAEMDLHLTQMDAVSAFLNGPLNEDVYMEQPPNFEDKSNRVCKLKKSIYGLKQSGRNWNQLLNQTLIDFGLKR 117
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2I0LF58_PUNGR (Uncharacterized protein (Fragment) n=1 Tax=Punica granatum TaxID=22663 RepID=A0A2I0LF58_PUNGR) HSP 1 Score: 86.3 bits (212), Expect = 1.560e-17 Identity = 45/101 (44.55%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
QVEG DF +T APVA ++T+R +L+VA +E+ MDV A+L+ ++EE+ ++LPP F V RL KSLYGL+Q+ +NW + D L G G +S
Sbjct: 870 QVEGIDFHETFAPVAKLVTVRCLLTVAVARGWEMHQMDVQNAFLHGNLDEEVYMRLPPGFFSRRKEVVCRLRKSLYGLRQASRNWYSKFADALRGYGFHQS 970
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3KXP2_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 (Fragment) n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3KXP2_TRIPR) HSP 1 Score: 81.3 bits (199), Expect = 1.760e-17 Identity = 41/85 (48.24%), Postives = 60/85 (70.59%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEFVR-------RLHKSLYGLKQSGQNW 234
QVEG D+F T APVA ++T+R +LSVAA ++ L +DV+ A+L+ + E++ ++LPP F R +LHKSLYGLKQ+ +NW
Sbjct: 39 QVEGIDYFDTFAPVAKLVTVRVLLSVAAGKNWPLHQLDVNNAFLHGDLHEDVYMQLPPGFRRQGEPLVCKLHKSLYGLKQASRNW 123
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2K3N4Z1_TRIPR (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=1 Tax=Trifolium pratense TaxID=57577 RepID=A0A2K3N4Z1_TRIPR) HSP 1 Score: 85.9 bits (211), Expect = 1.930e-17 Identity = 47/101 (46.53%), Postives = 65/101 (64.36%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF-------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
QVEG ++ +T APVA M+T+RT+L+VAA D+EL MDV +L+ + EE+ +K+PP F V +LHKSLYGLKQ+ + W L L G Q+S
Sbjct: 65 QVEGVNYTETFAPVAKMVTVRTVLAVAAAKDWELHQMDVHNXFLHGDLHEEVFMKMPPGFSTSEQNMVCKLHKSLYGLKQAPRCWFAKLSAALKSYGFQQS 165
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A2P6QR46_ROSCH (Putative RNA-directed DNA polymerase n=1 Tax=Rosa chinensis TaxID=74649 RepID=A0A2P6QR46_ROSCH) HSP 1 Score: 85.9 bits (211), Expect = 1.990e-17 Identity = 48/102 (47.06%), Postives = 62/102 (60.78%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPP--------EFVRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
Q G D+ +T APVA M T+R +LSVA H + L MDV A+L+ +EEE+ +KLPP E V +LHKS+YGLKQS + W L L +G QRS
Sbjct: 98 QTYGVDYKETFAPVAKMSTVRVLLSVAVNHAWPLYQMDVKNAFLHGDLEEEVYMKLPPGHPQSHDLEIVCKLHKSIYGLKQSPRAWYAKLSSVLEEVGFQRS 199
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A1A8UYT1_NOTFU (Uncharacterized protein n=5 Tax=Nothobranchius TaxID=28779 RepID=A0A1A8UYT1_NOTFU) HSP 1 Score: 85.5 bits (210), Expect = 2.940e-17 Identity = 44/106 (41.51%), Postives = 68/106 (64.15%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRSTT 288
QV+G D+++T +P A + +LR ++ +AA+H+ +L MDV AAYL+AP++ E+ ++ P F V +L+KS+YGLKQSG+NWN L L G +S T
Sbjct: 926 QVQGVDYYETFSPTANLTSLRVLMQLAAQHNLKLHQMDVKAAYLHAPIDCEVYMEQPQGFHEGPKGERKMVWKLNKSIYGLKQSGRNWNQMLHGSLIKNGFVQSAT 1031
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Match: A0A7D9DFN2_PARCT (Reverse transcriptase Ty1/copia-type domain-containing protein n=2 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9DFN2_PARCT) HSP 1 Score: 84.0 bits (206), Expect = 3.530e-17 Identity = 46/104 (44.23%), Postives = 63/104 (60.58%), Query Frame = 1
Query: 1 QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEELLIKLPPEF----------VRRLHKSLYGLKQSGQNWNNNLDDFLAGIGLQRS 282
QV+G D+ +T AP A + ++R ++ +A +HD + MDV AYL+AP+ +EL I P F V RL KSLYGLKQSG+NWN L + LA G R+
Sbjct: 142 QVKGIDYQETFAPTASITSIRVLMQLAVKHDLIVHQMDVKTAYLHAPITQELYIDQPQGFEEVSESGERLVYRLKKSLYGLKQSGRNWNILLHEHLANDGFVRN 245 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4080.10532.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4080.10532.1 >prot_H-paniculata_contig4080.10532.1 ID=prot_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=102bp QVEGEDFFKTSAPVALMLTLRTILSVAAEHDFELEGMDVDAAYLNAPVEEback to top mRNA from alignment at H-paniculata_contig4080:5173..5478+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4080.10532.1 ID=mRNA_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=306bp|location=Sequence derived from alignment at H-paniculata_contig4080:5173..5478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4080:5173..5478+ >mRNA_H-paniculata_contig4080.10532.1 ID=mRNA_H-paniculata_contig4080.10532.1|Name=mRNA_H-paniculata_contig4080.10532.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=612bp|location=Sequence derived from alignment at H-paniculata_contig4080:5173..5478+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |