prot_H-paniculata_contig4074.10524.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4074.10524.1
Unique Name	prot_H-paniculata_contig4074.10524.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	181

Homology

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 2.610e-87
Identity = 125/179 (69.83%), Postives = 144/179 (80.45%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQPPLGFWDPLGL+ED DQE+F+ LR  EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI  FI F+E+ VMK VEGSFPGD T GG NP+   W  MS E QA KR+IELNNGRAAQMGI  L+VHE +N  PYVINDLLG  YNF
Sbjct:    3 MSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNF 180

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 259 bits (663), Expect = 1.500e-85
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQPPLGFWDPLGL+ D DQE+F+ LR  EVKHGRIAM+A+ GH+T QNVR PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI  F+ F+E+ VMK VEGSFPGD T GG NP+A  W  MS E Q  KR+IELNNGRAAQMGI  L+VHE +N  PY+INDLLG SY F
Sbjct:   40 MSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTF 217

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 258 bits (660), Expect = 4.750e-85
Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQPPLGFWDPLGL+ D DQE+F+ LR  EVKHGRIAM+A+ GH+T QNVR PG+LS+S +L+FADMPNG+ AL+KIPPAG+ QI  F+ F+E+ VMK VEGSFPGD T GG NP+A  W  MS E QA KR+IELNNGRAAQMGI  L+VHE +N  PYVINDLLG  Y F
Sbjct:   43 MSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 220

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 255 bits (651), Expect = 3.000e-84
Identity = 123/179 (68.72%), Postives = 142/179 (79.33%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR  EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI  FI F+E+ VMK VEGSFPGD T GG NP+A  W  MS E Q  KR+IELNNGRAAQMGI  L+VHE +N  PYVINDLLG SYNF
Sbjct:    4 MSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 181

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 255 bits (651), Expect = 9.720e-84
Identity = 122/179 (68.16%), Postives = 142/179 (79.33%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR  EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI  FI F+E+ VMK VEGSFPGD T GG NP+   W  MS E QA KR+IELNNGRAAQMGI  L+VHE +N  PYVINDL+G SY F
Sbjct:   39 MSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTF 216

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 260 bits (665), Expect = 1.180e-83
Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQPPLGFWDPLGL+ED DQE+F+ LR  EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI  FI F+E+ VMK VEGSFPGD T GG NP+   W  MS E QA KR+IELNNGRAAQMGI  L+VHE +N  PYVINDLLG  Y F
Sbjct:  199 MSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 376

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 254 bits (648), Expect = 2.690e-83
Identity = 123/179 (68.72%), Postives = 142/179 (79.33%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQ PLGFWDPLGL+ED DQ+ F+ LR  EVK GRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI  FI F+E+ VMK VEGSFPGD T GG NP+A  W  MS E QA KR+IELNNGRAAQMGI  L+VHE +N  PYVINDLLG SYNF
Sbjct:   38 MSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 215

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 251 bits (641), Expect = 2.640e-82
Identity = 119/179 (66.48%), Postives = 141/179 (78.77%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR  EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI  FI F+E+ VMK VEGSFPGD   GG NP+A  W  MS E QA KR+IELNNGRAAQMGI G++VHE ++  PY+ NDLLG SY F
Sbjct:   33 MSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGG-NPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTF 210

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 242 bits (618), Expect = 8.590e-79
Identity = 118/179 (65.92%), Postives = 138/179 (77.09%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 179
            MS+E EIGAQPP+GFWDPLGLV D DQE+FD LR  E+KHGRIAM+AV+GHIT QN R PG+LS  ENLAFAD PNG+ A +KIPP G LQI+L I   E+ V+KQVEGSFPGD T GG N +   W  MS E QA KR+IELNNGRAAQMGI  ++VHE ++  PY+INDL G +Y F
Sbjct:   34 MSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGG-NIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQF 211

[Close]

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA)

HSP 1 Score: 231 bits (588), Expect = 1.910e-74
Identity = 111/174 (63.79%), Postives = 137/174 (78.74%), Query Frame = 0

Query:    1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLG 174
            MS+E E+G Q PLG+WDPL  +E+ DQE+FD LR  E+KHGRI M+A+LGHI  +NVR PG+LS S + +FADMPNGLGAL+K+ P G+ QI++FI F+EV VMKQ EGSFPGDM+    NP+ KQW     E + +KR+IELNNGRAAQMGIFGL+VHE IN  PYVIN+LLG
Sbjct:   19 MSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRV--NPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLG 190

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5JDS8_9PHAE	2.610e-87	69.83	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
A0A6H5KCX6_9PHAE	1.500e-85	68.72	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	4.750e-85	68.72	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPD_MACPY	3.000e-84	68.72	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPB_MACPY	9.720e-84	68.16	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
D8LNK6_ECTSI	1.180e-83	69.27	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPC_MACPY	2.690e-83	68.72	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
FCPF_MACPY	2.640e-82	66.48	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPE_MACPY	8.590e-79	65.92	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]
Q9FEP5_SACLA	1.910e-74	63.79	Light harvesting protein lhcf3 (Fragment) n=1 Tax=...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 6..176 e-value: 2.4E-27 score: 97.9
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 8..160 e-value: 2.9E-30 score: 106.0
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 6..165
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 2..172
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 6..165

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4074	contig	H-paniculata_contig4074:12870..13412 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4074.10524.1	mRNA_H-paniculata_contig4074.10524.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4074 12870..14323 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4074.10524.1 ID=prot_H-paniculata_contig4074.10524.1|Name=mRNA_H-paniculata_contig4074.10524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp
MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLG
HITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFME
VGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQ
MGIFGLVVHESINGHPYVINDLLGMSYNFP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln