mRNA_H-paniculata_contig4074.10524.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE) HSP 1 Score: 263 bits (671), Expect = 8.130e-83 Identity = 125/179 (69.83%), Postives = 144/179 (80.45%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQPPLGFWDPLGL+ED DQE+F+ LR EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI FI F+E+ VMK VEGSFPGD T GG NP+ W MS E QA KR+IELNNGRAAQMGI L+VHE +N PYVINDLLG YNF
Sbjct: 3 MSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNF 180
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE) HSP 1 Score: 259 bits (663), Expect = 4.500e-81 Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQPPLGFWDPLGL+ D DQE+F+ LR EVKHGRIAM+A+ GH+T QNVR PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI F+ F+E+ VMK VEGSFPGD T GG NP+A W MS E Q KR+IELNNGRAAQMGI L+VHE +N PY+INDLLG SY F
Sbjct: 40 MSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTF 217
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE) HSP 1 Score: 258 bits (660), Expect = 1.400e-80 Identity = 123/179 (68.72%), Postives = 144/179 (80.45%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQPPLGFWDPLGL+ D DQE+F+ LR EVKHGRIAM+A+ GH+T QNVR PG+LS+S +L+FADMPNG+ AL+KIPPAG+ QI F+ F+E+ VMK VEGSFPGD T GG NP+A W MS E QA KR+IELNNGRAAQMGI L+VHE +N PYVINDLLG Y F
Sbjct: 43 MSFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGG-NPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 220
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY) HSP 1 Score: 255 bits (651), Expect = 8.460e-80 Identity = 123/179 (68.72%), Postives = 142/179 (79.33%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI FI F+E+ VMK VEGSFPGD T GG NP+A W MS E Q KR+IELNNGRAAQMGI L+VHE +N PYVINDLLG SYNF
Sbjct: 4 MSFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 181
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY) HSP 1 Score: 255 bits (651), Expect = 2.740e-79 Identity = 122/179 (68.16%), Postives = 142/179 (79.33%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI FI F+E+ VMK VEGSFPGD T GG NP+ W MS E QA KR+IELNNGRAAQMGI L+VHE +N PYVINDL+G SY F
Sbjct: 39 MSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTF 216
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI) HSP 1 Score: 260 bits (665), Expect = 3.570e-79 Identity = 124/179 (69.27%), Postives = 143/179 (79.89%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQPPLGFWDPLGL+ED DQE+F+ LR EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPPAG+ QI FI F+E+ VMK VEGSFPGD T GG NP+ W MS E QA KR+IELNNGRAAQMGI L+VHE +N PYVINDLLG Y F
Sbjct: 199 MSFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGG-NPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTF 376
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY) HSP 1 Score: 254 bits (648), Expect = 7.480e-79 Identity = 123/179 (68.72%), Postives = 142/179 (79.33%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQ PLGFWDPLGL+ED DQ+ F+ LR EVK GRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI FI F+E+ VMK VEGSFPGD T GG NP+A W MS E QA KR+IELNNGRAAQMGI L+VHE +N PYVINDLLG SYNF
Sbjct: 38 MSFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGG-NPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNF 215
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY) HSP 1 Score: 251 bits (641), Expect = 7.090e-78 Identity = 119/179 (66.48%), Postives = 141/179 (78.77%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQ PLGFWDPLGL+ D DQE+F+ LR EVKHGRIAM+A+ GH+T QN R PG+LS+S NL+FADMPNG+ AL+KIPP G+ QI FI F+E+ VMK VEGSFPGD GG NP+A W MS E QA KR+IELNNGRAAQMGI G++VHE ++ PY+ NDLLG SY F
Sbjct: 33 MSFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGG-NPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTF 210
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY) HSP 1 Score: 242 bits (618), Expect = 2.040e-74 Identity = 118/179 (65.92%), Postives = 138/179 (77.09%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLGMSYNF 537
MS+E EIGAQPP+GFWDPLGLV D DQE+FD LR E+KHGRIAM+AV+GHIT QN R PG+LS ENLAFAD PNG+ A +KIPP G LQI+L I E+ V+KQVEGSFPGD T GG N + W MS E QA KR+IELNNGRAAQMGI ++VHE ++ PY+INDL G +Y F
Sbjct: 34 MSFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGG-NIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQF 211
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Match: Q9FEP5_SACLA (Light harvesting protein lhcf3 (Fragment) n=1 Tax=Saccharina latissima TaxID=309358 RepID=Q9FEP5_SACLA) HSP 1 Score: 231 bits (588), Expect = 3.790e-70 Identity = 111/174 (63.79%), Postives = 137/174 (78.74%), Query Frame = 1
Query: 1 MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGHITAQNVRFPGLLSSSENLAFADMPNGLGALAKIPPAGILQILLFIFFMEVGVMKQVEGSFPGDMTYGGQNPWAKQWAKMSPEQQAKKRSIELNNGRAAQMGIFGLVVHESINGHPYVINDLLG 522
MS+E E+G Q PLG+WDPL +E+ DQE+FD LR E+KHGRI M+A+LGHI +NVR PG+LS S + +FADMPNGLGAL+K+ P G+ QI++FI F+EV VMKQ EGSFPGDM+ NP+ KQW E + +KR+IELNNGRAAQMGIFGL+VHE IN PYVIN+LLG
Sbjct: 19 MSFENELGVQAPLGYWDPLYWLENADQERFDRLRYVEIKHGRICMLAILGHIVQENVRLPGMLSFSNDQSFADMPNGLGALSKMGPIGVAQIVIFIGFLEVFVMKQKEGSFPGDMSRV--NPFEKQWDSFDEETKLRKRAIELNNGRAAQMGIFGLIVHEVINNQPYVINNLLG 190 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4074.10524.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig4074.10524.1 >prot_H-paniculata_contig4074.10524.1 ID=prot_H-paniculata_contig4074.10524.1|Name=mRNA_H-paniculata_contig4074.10524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=181bp MSYEKEIGAQPPLGFWDPLGLVEDVDQEQFDYLRLAEVKHGRIAMIAVLGback to top mRNA from alignment at H-paniculata_contig4074:12870..14323+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig4074.10524.1 ID=mRNA_H-paniculata_contig4074.10524.1|Name=mRNA_H-paniculata_contig4074.10524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=1454bp|location=Sequence derived from alignment at H-paniculata_contig4074:12870..14323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig4074:12870..14323+ >mRNA_H-paniculata_contig4074.10524.1 ID=mRNA_H-paniculata_contig4074.10524.1|Name=mRNA_H-paniculata_contig4074.10524.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1086bp|location=Sequence derived from alignment at H-paniculata_contig4074:12870..14323+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |