mRNA_H-paniculata_contig40715.10520.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous
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Overview
Homology
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7T0D1_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T0D1_9STRA) HSP 1 Score: 106 bits (264), Expect = 5.200e-23 Identity = 57/132 (43.18%), Postives = 76/132 (57.58%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNFWWSF 417
+A G+SQ G D+ PVA ++TIR V +LA D EL+ MDVD A+L +EE++++K PP + S V RLRKSLYG+KQ GRN + +D + G G S+TDPC Y GE SF
Sbjct: 300 IAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSTDPCLYVKFGSSGEMEMVNSF 431
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A6A4ZM73_9STRA (Integrase catalytic domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A6A4ZM73_9STRA) HSP 1 Score: 104 bits (260), Expect = 1.760e-22 Identity = 55/124 (44.35%), Postives = 76/124 (61.29%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI---PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDE 387
VA GFSQ G D+ E PVA+ ++IR + SLA +Y +L+ MDV AFLNG ++EE+++K+P L + D P V RL+KSLYG+KQ R N DDF++ G + S D C Y R +
Sbjct: 370 VAKGFSQQYGVDYEETFAPVAKFASIRILLSLAAQYSLDLQQMDVKTAFLNGTLDEEIYMKIPEGLDVNNGDSKSGPLVLRLKKSLYGLKQAPRLWNKTFDDFMLSNGFNKSEADHCIYSKRTD 493
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TII5_9STRA (Gag-pol polyprotein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TII5_9STRA) HSP 1 Score: 100 bits (250), Expect = 4.450e-22 Identity = 53/127 (41.73%), Postives = 74/127 (58.27%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPP---DLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
+A G+SQ G D+ PVA ++TIR + ++A D EL+ MDVD A+L +EE+++VK PP P ++ V RLRKSLYG+KQ GRN + +D + G G S+ DPC Y GE
Sbjct: 42 IAKGYSQEYGYDYLNTYAPVASITTIRLILAIACILDLELDNMDVDTAYLQSDLEEKIYVKQPPGYEQCGPNGEEL--VCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHSSSADPCLYVKFGSSGE 166
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TH08_9STRA (RNA-dependent DNA polymerase n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TH08_9STRA) HSP 1 Score: 99.8 bits (247), Expect = 5.420e-22 Identity = 53/125 (42.40%), Postives = 72/125 (57.60%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
+A G+SQ G D+ + PVA M+TIR V +LA D EL+ MDVD A+L +EE++ +K PP + + V RLRKSLYG+KQ GRN + +D + G S+ DPC Y GE
Sbjct: 127 IAKGYSQKYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVHIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYAFHPSSADPCLYVKFGSSGE 251
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TJ26_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TJ26_9STRA) HSP 1 Score: 102 bits (254), Expect = 1.120e-21 Identity = 55/125 (44.00%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
+A G+SQ G D+ PVA M+TIR V +LA D EL+ MDVD A+L +EE++++K PP + + V RLRKSLYG+KQ GRN + +D + G GL S DPC Y GE
Sbjct: 262 IAKGYSQEFGYDYLHTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPPGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGLHPSYADPCLYVKFASSGE 386
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7TCB8_9STRA (Gag-pol polyprotein n=3 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TCB8_9STRA) HSP 1 Score: 101 bits (251), Expect = 1.600e-21 Identity = 54/125 (43.20%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPF-SRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
+A G+SQ G D+ PVA ++TIR V +LA D EL+ MDV+ A+L +EE+++VK PP + S V RLRKSLYG+KQ GRN + +D + G G S+ DPC Y GE
Sbjct: 42 IAKGYSQEFGYDYLHTYAPVASITTIRLVLALACILDLELDNMDVEPAYLQSDLEEKVYVKQPPGYEQYGSNGEELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE 166
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A7D9L0S1_PARCT (Retrovirus-related Pol poly from transposon TNT 1-94 n=1 Tax=Paramuricea clavata TaxID=317549 RepID=A0A7D9L0S1_PARCT) HSP 1 Score: 97.1 bits (240), Expect = 2.050e-21 Identity = 59/158 (37.34%), Postives = 87/158 (55.06%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPF-VRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNFWWSFILTTWSSLDAVRK*TNSSTTLVGVVG 495
VA G+SQ+ G D+ E +P ARM++IR + LA++Y+ + MDV A+LN ++ EL+V+ P + +D + V +LRKSLYG+KQ GRN N+ L LV G S +D C Y T I+ W +D + +N + TL V G
Sbjct: 49 VAKGYSQIPGVDYHETFSPTARMTSIRILMQLAMQYNLTIHQMDVKTAYLNAPIDCELYVEQPEGFTMTGKDGEYLVYKLRKSLYGLKQSGRNWNSVLHSHLVSEGFIQSQSDSCVYTKISGKSMT------IVIIW--VDDIIIASNCTVTLTNVKG 198
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: A0A1M2VT18_TRAPU (Retrovirus-related Pol polyprotein from transposon TNT 1-94 n=3 Tax=Trametes TaxID=5324 RepID=A0A1M2VT18_TRAPU) HSP 1 Score: 101 bits (251), Expect = 3.170e-21 Identity = 53/127 (41.73%), Postives = 80/127 (62.99%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGETNF 405
VA GF+Q G D+ ++ PVA + ++R + +LA YD EL+ MDV AA+LNG ++EEL++ +PPD + + RL++SLYG+KQ GR N LD L G+G + ++ C Y RD+ G+ F
Sbjct: 1051 VARGFTQKPGIDYQDVFAPVANLESVRIILALAARYDLELDQMDVSAAYLNGELDEELYL-MPPD--GVAIEPGHCWRLKRSLYGLKQAGRTWNKTLDRKLTGLGFNRLDSETCLYVFRDDKGQLCF 1174
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: UPI0013E91BFE (hypothetical protein n=1 Tax=Klebsiella pneumoniae TaxID=573 RepID=UPI0013E91BFE) HSP 1 Score: 94.0 bits (232), Expect = 6.790e-21 Identity = 47/116 (40.52%), Postives = 75/116 (64.66%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDIPFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSY 372
VA GF+Q EG D+ E +PV R ST+R +F+L+++ F + +DV AFLNG ++E +++++PP+L S V +LR+++YG+KQ R N +DD L+ +G S +PC Y
Sbjct: 10 VAKGFTQKEGVDYKETYSPVLRYSTLRLLFALSVKLKFTITHLDVTTAFLNGYLDENVYMQVPPNLECKSNS---VLKLRRAIYGLKQSARAWNKRVDDCLLELGYVKSKLEPCLY 122
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Match: W7T174_9STRA (Gag-pol polyprotein n=2 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T174_9STRA) HSP 1 Score: 100 bits (248), Expect = 7.580e-21 Identity = 53/125 (42.40%), Postives = 73/125 (58.40%), Query Frame = 1
Query: 25 VAPGFSQVEGEDFFEISTPVARMSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDI-PFVRRLRKSLYGIKQRGRN*NNALDDFLVGIGLDCSTTDPCSYFSRDEGGE 396
+A G+SQ G D+ + PVA M+TIR V +LA D EL+ MDVD A+L +EE++++K P + + V RLRKSLYG+KQ GRN + +D + G G S+ DPC Y GE
Sbjct: 560 IAKGYSQEYGYDYLQTYAPVASMTTIRLVLALACILDLELDNMDVDTAYLQSDLEEKVYIKQPHGYEKYGPNGGELVCRLRKSLYGLKQSGRNWHKKIDGWFRGYGFHPSSADPCLYVKFGSSGE 684 The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig40715.10520.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_H-paniculata_contig40715.10520.1 >prot_H-paniculata_contig40715.10520.1 ID=prot_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=71bp MSTIRTVFSLALEYDFELEGMDVDAAFLNGLVEEELFVKLPPDLSPFSRDback to top mRNA from alignment at H-paniculata_contig40715:1001..1617+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_H-paniculata_contig40715.10520.1 ID=mRNA_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=617bp|location=Sequence derived from alignment at H-paniculata_contig40715:1001..1617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top Coding sequence (CDS) from alignment at H-paniculata_contig40715:1001..1617+ >mRNA_H-paniculata_contig40715.10520.1 ID=mRNA_H-paniculata_contig40715.10520.1|Name=mRNA_H-paniculata_contig40715.10520.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=426bp|location=Sequence derived from alignment at H-paniculata_contig40715:1001..1617+ (Halopteris paniculata Hal_grac_a_UBK monoicous)back to top |