prot_H-paniculata_contig4070.10516.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4070.10516.1
Unique Name	prot_H-paniculata_contig4070.10516.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	234

Homology

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 295 bits (756), Expect = 8.430e-99
Identity = 158/229 (69.00%), Postives = 176/229 (76.86%), Query Frame = 0

Query:    7 VALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            +ALA   SA AFV PSAF G  VA+   SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +E KRAIELNNGRAAQMGIL +M HE+++N+PYIINDLLGASYTFN
Sbjct:    6 MALACAASANAFVAPSAFNGAAVATPAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 285 bits (728), Expect = 1.690e-94
Identity = 148/214 (69.16%), Postives = 165/214 (77.10%), Query Frame = 0

Query:   22 SAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            SAF G  VA+S  SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SAD+SFADMPNGVAALSKIPP GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 281 bits (718), Expect = 3.990e-93
Identity = 148/215 (68.84%), Postives = 163/215 (75.81%), Query Frame = 0

Query:   21 PSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            PSAF G  +++   SSSA+ M                SFES IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD  + G P+A  W   S E +  KRAIELNNGRAAQMGILGMM HE++SNQPYI NDLLGASYTFN
Sbjct:   13 PSAFNGAALSTPAKSSSAMKM----------------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 279 bits (714), Expect = 1.980e-92
Identity = 149/233 (63.95%), Postives = 173/233 (74.25%), Query Frame = 0

Query:    3 MEMAVALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            M+ AV   +  +A  F  PSAF G  + +S  + SA+ M                SFES IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDL+GASYTFN
Sbjct:    1 MKSAVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKM----------------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 276 bits (706), Expect = 9.570e-92
Identity = 135/178 (75.84%), Postives = 151/178 (84.83%), Query Frame = 0

Query:   58 SFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA Y FN
Sbjct:    4 SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 281 bits (718), Expect = 8.920e-91
Identity = 146/213 (68.54%), Postives = 164/213 (77.00%), Query Frame = 0

Query:   23 AFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            AF G  VA+   SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 273 bits (699), Expect = 1.150e-90
Identity = 135/178 (75.84%), Postives = 150/178 (84.27%), Query Frame = 0

Query:   58 SFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            SFE  IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S+E +E KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGASY FN
Sbjct:    5 SFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182

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BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 270 bits (689), Expect = 1.210e-88
Identity = 143/215 (66.51%), Postives = 161/215 (74.88%), Query Frame = 0

Query:   21 PSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            PSAF G  + +S  SSSA+ M                SFES IGAQ PLGF+DP GLL +ADQ+ FERLRYVE+K GRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGASY FN
Sbjct:   18 PSAFNGAALTTSAKSSSAMKM----------------SFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216

[Close]

BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 262 bits (669), Expect = 9.450e-86
Identity = 134/203 (66.01%), Postives = 150/203 (73.89%), Query Frame = 0

Query:   58 SFESAIGAQPPLGFYDPAGLLTNA-------------------------DQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            SFES +GAQPPLGF+DP GLL +                          DQERF+RLRYVE+KHGRISMLA+AGHL+ QN+R PG LS  A ++FADMPNGVAA+SKIPPLGL QI+AFIGFLEL VMK  EGSFPGDMT+ G P+A  W   S+E K  KRAIELNNGRAAQMGIL MM HE+ISNQPYIINDLL A YTFN
Sbjct:    4 SFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206

[Close]

BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 254 bits (648), Expect = 1.790e-82
Identity = 134/212 (63.21%), Postives = 154/212 (72.64%), Query Frame = 0

Query:   24 FTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 233
            F G  +A+S  SSSA+ M                SFES IGAQPP+GF+DP GL+ +ADQERF+RLRYVEIKHGRI+MLA+ GH+ QQN RLPGMLS   +++FAD PNGVAA SKIPPLG  QII  IG  EL V+KQ EGSFPGD T  G  +  AW   S+E +  KRAIELNNGRAAQMGIL MM HEQ+SNQPYIINDL GA+Y FN
Sbjct:   17 FNGAALATSAKSSSAMKM----------------SFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5KCX6_9PHAE	8.430e-99	69.00	LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI...	[more]
A0A6H5JHT6_9PHAE	1.690e-94	69.16	Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA...	[more]
FCPF_MACPY	3.990e-93	68.84	Fucoxanthin-chlorophyll a-c binding protein F, chl...	[more]
FCPB_MACPY	1.980e-92	63.95	Fucoxanthin-chlorophyll a-c binding protein B, chl...	[more]
A0A6H5JDS8_9PHAE	9.570e-92	75.84	LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D8LNK6_ECTSI	8.920e-91	68.54	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
FCPD_MACPY	1.150e-90	75.84	Fucoxanthin-chlorophyll a-c binding protein D, chl...	[more]
FCPC_MACPY	1.210e-88	66.51	Fucoxanthin-chlorophyll a-c binding protein C, chl...	[more]
A0A6H5KBS3_9PHAE	9.450e-86	66.01	LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
FCPE_MACPY	1.790e-82	63.21	Fucoxanthin-chlorophyll a-c binding protein E, chl...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 64..213 e-value: 1.9E-30 score: 106.5
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 56..229 e-value: 4.2E-25 score: 90.6
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 32..217
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 32..217
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 19..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..30
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 7..18
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..6
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 31..233
None	No IPR available	PROSITE	PS51257	PROKAR_LIPOPROTEIN	coord: 1..16 score: 5.0
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..30 score: 0.454
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 56..224

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4070	contig	H-paniculata_contig4070:1322..4356 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4070.10516.1	mRNA_H-paniculata_contig4070.10516.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4070 1273..5121 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4070.10516.1 ID=prot_H-paniculata_contig4070.10516.1|Name=mRNA_H-paniculata_contig4070.10516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MKMEMAVALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKK
GPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRIS
MLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIA
FIGFLELGVMKQKEGSFPGDMTLAGEPYAWTKWSDEVKEQKRAIELNNGR
AAQMGILGMMAHEQISNQPYIINDLLGASYTFN*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR022796	Chloroa_b-bind
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR001344	Chloro_AB-bd_pln