mRNA_H-paniculata_contig4070.10516.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4070.10516.1
Unique NamemRNA_H-paniculata_contig4070.10516.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5KCX6_9PHAE (LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepID=A0A6H5KCX6_9PHAE)

HSP 1 Score: 296 bits (758), Expect = 4.430e-95
Identity = 158/228 (69.30%), Postives = 175/228 (76.75%), Query Frame = 2 
Query:   71 ALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            ALA   SA AFV PSAF G  VA+   SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +E KRAIELNNGRAAQMGIL +M HE+++N+PYIINDLLGASYTFN
Sbjct:    7 ALACAASANAFVAPSAFNGAAVATPAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYIINDLLGASYTFN 218
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5JHT6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHT6_9PHAE)

HSP 1 Score: 285 bits (730), Expect = 7.980e-91
Identity = 148/214 (69.16%), Postives = 165/214 (77.10%), Query Frame = 2 
Query:  113 SAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            SAF G  VA+S  SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SAD+SFADMPNGVAALSKIPP GL QI AF+GFLEL VMK  EGSFPGD T  G P+A  W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA YTFN
Sbjct:   24 SAFNGAAVATSAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNVRLPGMLSNSADLSFADMPNGVAALSKIPPAGLAQIFAFVGFLELAVMKNVEGSFPGDFTNGGNPFASSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 221
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPF_MACPY (Fucoxanthin-chlorophyll a-c binding protein F, chloroplastic (Fragment) n=1 Tax=Macrocystis pyrifera TaxID=35122 RepID=FCPF_MACPY)

HSP 1 Score: 281 bits (720), Expect = 1.810e-89
Identity = 148/215 (68.84%), Postives = 163/215 (75.81%), Query Frame = 2 
Query:  110 PSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            PSAF G  +++   SSSA+ M                SFES IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD  + G P+A  W   S E +  KRAIELNNGRAAQMGILGMM HE++SNQPYI NDLLGASYTFN
Sbjct:   13 PSAFNGAALSTPAKSSSAMKM----------------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFIIGGNPFASSWDSMSSETQASKRAIELNNGRAAQMGILGMMVHEELSNQPYITNDLLGASYTFN 211
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPB_MACPY (Fucoxanthin-chlorophyll a-c binding protein B, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPB_MACPY)

HSP 1 Score: 280 bits (716), Expect = 8.840e-89
Identity = 149/233 (63.95%), Postives = 173/233 (74.25%), Query Frame = 2 
Query:   56 MEMAVALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            M+ AV   +  +A  F  PSAF G  + +S  + SA+ M                SFES IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDL+GASYTFN
Sbjct:    1 MKSAVMAVACAAAPGFRGPSAFNGAALTTSAKACSAMKM----------------SFESEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGASWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLVGASYTFN 217
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5JDS8_9PHAE (LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JDS8_9PHAE)

HSP 1 Score: 277 bits (708), Expect = 4.120e-88
Identity = 135/178 (75.84%), Postives = 151/178 (84.83%), Query Frame = 2 
Query:  221 SFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA Y FN
Sbjct:    4 SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYNFN 181
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: D8LNK6_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LNK6_ECTSI)

HSP 1 Score: 281 bits (720), Expect = 4.060e-87
Identity = 146/213 (68.54%), Postives = 164/213 (77.00%), Query Frame = 2 
Query:  116 AFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            AF G  VA+   SSSA+ M                SFES IGAQPPLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI AFIGFLEL VMK  EGSFPGD TL G P+  +W   S+E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGA YTFN
Sbjct:  181 AFNGAAVATPAKSSSAMKM----------------SFESEIGAQPPLGFWDPLGLLEDADQERFERLRYVEVKHGRIAMLAIAGHLTQQNTRLPGMLSNSANLSFADMPNGVAALSKIPPAGLAQIFAFIGFLELAVMKNVEGSFPGDFTLGGNPFGSSWDAMSEETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGAGYTFN 377
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPD_MACPY (Fucoxanthin-chlorophyll a-c binding protein D, chloroplastic (Fragment) n=2 Tax=Phaeophyceae TaxID=2870 RepID=FCPD_MACPY)

HSP 1 Score: 274 bits (701), Expect = 4.800e-87
Identity = 135/178 (75.84%), Postives = 150/178 (84.27%), Query Frame = 2 
Query:  221 SFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            SFE  IGAQ PLGF+DP GLL +ADQERFERLRYVE+KHGRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S+E +E KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGASY FN
Sbjct:    5 SFELEIGAQAPLGFWDPLGLLADADQERFERLRYVEVKHGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSEETQESKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 182
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPC_MACPY (Fucoxanthin-chlorophyll a-c binding protein C, chloroplastic n=6 Tax=Phaeophyceae TaxID=2870 RepID=FCPC_MACPY)

HSP 1 Score: 270 bits (691), Expect = 4.840e-85
Identity = 143/215 (66.51%), Postives = 161/215 (74.88%), Query Frame = 2 
Query:  110 PSAFTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            PSAF G  + +S  SSSA+ M                SFES IGAQ PLGF+DP GLL +ADQ+ FERLRYVE+K GRI+MLAIAGHL QQN RLPGMLS SA++SFADMPNGVAALSKIPP GL QI  FIGFLEL VMK  EGSFPGD TL G P+A  W   S E +  KRAIELNNGRAAQMGIL +M HE+++N+PY+INDLLGASY FN
Sbjct:   18 PSAFNGAALTTSAKSSSAMKM----------------SFESEIGAQAPLGFWDPLGLLEDADQDAFERLRYVEVKLGRIAMLAIAGHLTQQNARLPGMLSNSANLSFADMPNGVAALSKIPPGGLAQIFGFIGFLELAVMKNVEGSFPGDFTLGGNPFASSWDAMSAETQASKRAIELNNGRAAQMGILALMVHEELNNKPYVINDLLGASYNFN 216
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: A0A6H5KBS3_9PHAE (LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KBS3_9PHAE)

HSP 1 Score: 263 bits (671), Expect = 3.450e-82
Identity = 134/203 (66.01%), Postives = 150/203 (73.89%), Query Frame = 2 
Query:  221 SFESAIGAQPPLGFYDPAGLLTNA-------------------------DQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPYA--WTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            SFES +GAQPPLGF+DP GLL +                          DQERF+RLRYVE+KHGRISMLA+AGHL+ QN+R PG LS  A ++FADMPNGVAA+SKIPPLGL QI+AFIGFLEL VMK  EGSFPGDMT+ G P+A  W   S+E K  KRAIELNNGRAAQMGIL MM HE+ISNQPYIINDLL A YTFN
Sbjct:    4 SFESELGAQPPLGFFDPLGLLIDQVVPQLPPSCQSSLLVICADGLEPWEDQERFDRLRYVEVKHGRISMLAVAGHLVAQNYRFPGYLSYDAKLTFADMPNGVAAISKIPPLGLAQIVAFIGFLELNVMKNVEGSFPGDMTIGGNPFAAQWDAMSEETKLSKRAIELNNGRAAQMGILAMMIHEEISNQPYIINDLLNAPYTFN 206
[Close]
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Match: FCPE_MACPY (Fucoxanthin-chlorophyll a-c binding protein E, chloroplastic n=3 Tax=Phaeophyceae TaxID=2870 RepID=FCPE_MACPY)

HSP 1 Score: 254 bits (650), Expect = 5.900e-79
Identity = 134/212 (63.21%), Postives = 154/212 (72.64%), Query Frame = 2 
Query:  119 FTGKVVASSVASSSALSMAAKNPAPKKGPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRISMLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIAFIGFLELGVMKQKEGSFPGDMTLAGEPY--AWTKWSDEVKEQKRAIELNNGRAAQMGILGMMAHEQISNQPYIINDLLGASYTFN 748
            F G  +A+S  SSSA+ M                SFES IGAQPP+GF+DP GL+ +ADQERF+RLRYVEIKHGRI+MLA+ GH+ QQN RLPGMLS   +++FAD PNGVAA SKIPPLG  QII  IG  EL V+KQ EGSFPGD T  G  +  AW   S+E +  KRAIELNNGRAAQMGIL MM HEQ+SNQPYIINDL GA+Y FN
Sbjct:   17 FNGAALATSAKSSSAMKM----------------SFESEIGAQPPIGFWDPLGLVADADQERFDRLRYVEIKHGRIAMLAVVGHITQQNTRLPGMLSFKENLAFADSPNGVAAFSKIPPLGTLQIILAIGCHELFVVKQVEGSFPGDCTTGGNIFQSAWDNMSEETQASKRAIELNNGRAAQMGILAMMVHEQLSNQPYIINDLAGAAYQFN 212
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4070.10516.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KCX6_9PHAE4.430e-9569.30LHCP protein n=20 Tax=Phaeophyceae TaxID=2870 RepI... [more]
A0A6H5JHT6_9PHAE7.980e-9169.16Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
FCPF_MACPY1.810e-8968.84Fucoxanthin-chlorophyll a-c binding protein F, chl... [more]
FCPB_MACPY8.840e-8963.95Fucoxanthin-chlorophyll a-c binding protein B, chl... [more]
A0A6H5JDS8_9PHAE4.120e-8875.84LHCP protein n=5 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D8LNK6_ECTSI4.060e-8768.54Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
FCPD_MACPY4.800e-8775.84Fucoxanthin-chlorophyll a-c binding protein D, chl... [more]
FCPC_MACPY4.840e-8566.51Fucoxanthin-chlorophyll a-c binding protein C, chl... [more]
A0A6H5KBS3_9PHAE3.450e-8266.01LHCP protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
FCPE_MACPY5.900e-7963.21Fucoxanthin-chlorophyll a-c binding protein E, chl... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4070contigH-paniculata_contig4070:1273..5121 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score298.1
Seed ortholog evalue3.5e-78
Seed eggNOG ortholog2880.D7G1R7
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2CDPH@1,2S3EU@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1516
Cds size702
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4070.10516.1prot_H-paniculata_contig4070.10516.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4070 1322..4356 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.4790726-UTR-H-paniculata_contig4070:1272..13211622930245.4790726-UTR-H-paniculata_contig4070:1272..1321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 1273..1321 +
1691481208.1950817-UTR-H-paniculata_contig4070:1272..13211691481208.1950817-UTR-H-paniculata_contig4070:1272..1321Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 1273..1321 +
1622930245.5446458-UTR-H-paniculata_contig4070:4356..51211622930245.5446458-UTR-H-paniculata_contig4070:4356..5121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 4357..5121 +
1691481208.2481084-UTR-H-paniculata_contig4070:4356..51211691481208.2481084-UTR-H-paniculata_contig4070:4356..5121Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4070 4357..5121 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930245.4912724-CDS-H-paniculata_contig4070:1321..15751622930245.4912724-CDS-H-paniculata_contig4070:1321..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 1322..1575 +
1691481208.2146156-CDS-H-paniculata_contig4070:1321..15751691481208.2146156-CDS-H-paniculata_contig4070:1321..1575Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 1322..1575 +
1622930245.5048826-CDS-H-paniculata_contig4070:2066..21611622930245.5048826-CDS-H-paniculata_contig4070:2066..2161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 2067..2161 +
1691481208.22391-CDS-H-paniculata_contig4070:2066..21611691481208.22391-CDS-H-paniculata_contig4070:2066..2161Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 2067..2161 +
1622930245.5158095-CDS-H-paniculata_contig4070:2516..27431622930245.5158095-CDS-H-paniculata_contig4070:2516..2743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 2517..2743 +
1691481208.232297-CDS-H-paniculata_contig4070:2516..27431691481208.232297-CDS-H-paniculata_contig4070:2516..2743Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 2517..2743 +
1622930245.5284214-CDS-H-paniculata_contig4070:4230..43561622930245.5284214-CDS-H-paniculata_contig4070:4230..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 4231..4356 +
1691481208.2403293-CDS-H-paniculata_contig4070:4230..43561691481208.2403293-CDS-H-paniculata_contig4070:4230..4356Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4070 4231..4356 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4070.10516.1

>prot_H-paniculata_contig4070.10516.1 ID=prot_H-paniculata_contig4070.10516.1|Name=mRNA_H-paniculata_contig4070.10516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=234bp
MKMEMAVALASMVSACAFVTPSAFTGKVVASSVASSSALSMAAKNPAPKK
GPVSRESSFESAIGAQPPLGFYDPAGLLTNADQERFERLRYVEIKHGRIS
MLAIAGHLIQQNFRLPGMLSTSADISFADMPNGVAALSKIPPLGLFQIIA
FIGFLELGVMKQKEGSFPGDMTLAGEPYAWTKWSDEVKEQKRAIELNNGR
AAQMGILGMMAHEQISNQPYIINDLLGASYTFN*
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mRNA from alignment at H-paniculata_contig4070:1273..5121+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4070.10516.1 ID=mRNA_H-paniculata_contig4070.10516.1|Name=mRNA_H-paniculata_contig4070.10516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3849bp|location=Sequence derived from alignment at H-paniculata_contig4070:1273..5121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATCTTCACTTCCATTTCTTGTAGTAAACTCTTCAATCCCCTGTGCTATCA
TGAAGATGGAAATGGCTGTTGCTCTTGCTTCCATGGTTTCGGCGTGCGCT
TTCGTGACACCCTCTGCATTTACCGGGAAGGTTGTTGCGTCATCTGTGGC
GTCCTCGTCTGCGCTCTCGATGGCGGCCAAGAACCCAGCGCCGAAGAAAG
GTCCCGTCTCGAGGGAATCTTCGTTTGAGTCGGCCATCGGCGCGCAGCCG
CCCCTTGGTTTTTACGATCCGGCCGGTCTCTTGACGAACGCGGACCAAGA
GAGGTGAGGGAATACTGAAACAGAACGCTCAACTGTTTTTACGCAATTTT
ACAGTCAGTGGGCTCACCGGTCGACAGTAAGTCAGTCAGTACATTCTGTC
TTGATGAAGCAGTCAAAATGTTGTGCTTGGTTTTCTTTGTCGATACATCC
GTTATCGTACTCATTCTGTACAGACTAAACTTGTTGTTCGCGTCACAATA
ATTAGGAGTCTGCCTGGGTTCACCTTATTCATTCATCTGTCAATAGATTT
CTTTTGCTTGATTTATCACACGCGCGTGATGTTTCTGAACATCATTCGAT
GACCTTGTACAAAAGGCGATGACCTGCGGAGTAGGTGATATACTCCACAG
TCTCCTGAAAATAGTTTCAAGAGCTGCTGACTTTACTGACTGTATCGCAG
CGTCTTGTCCGTGTGTCAGACAATGCACATATGCTTTGACTACCTACCAA
CTTGTAAATGACACCACAACCAATGCTTCAAATCCTCGGCGTAGGTTTGA
ACGTCTTCGTTACGTAGAGATCAAGCACGGCCGTATCTCCATGCTCGCCA
TCGCGGGGCACCTGATTCAGCAGAACTTTCGCCTCCCGGGTGAGTCATGT
CTTGATACTGGACCAGGGATATGTGTGGACGTTCATAGTTGGATCTGGTA
CTGCCTGGGTGCAAAGATCTCGAAATTGAAGGGATAGCCCCATGCATTCG
TCGATGTAAATGAAGTCATGGTTCATCGTGATGGTCATCTGTGCTGAAGT
GAACACATATGCAGTGTGGGCATTGCCGTTGGTGATCTCCGTATTTCCAG
GACTTGTGTTCGAGCACAGCCTACTGAAGCAGGTTGTTGGCAGCCGTGTC
CCTATAGGAAGTGTAACACCAAAGCGGTCAAAGCTTCCTGGAACCTAAAT
TTTTCACCTTACTATTCGATCTTGCAATATGTTTGTCCAAGCAGGCATGC
TTTCCACATCGGCCGACATTTCGTTCGCCGACATGCCTAATGGTGTCGCT
GCGTTGTCGAAGATCCCCCCGCTCGGCCTCTTCCAAATCATCGCCTTTAT
CGGGTTCCTTGAGCTGGGTGTGATGAAGCAGAAGGAGGGCTCTTTCCCAG
GAGATATGACCTTGGCGGGCGAGCCCTACGCGTGGACCAAGTGGAGTGAC
GAGGTCAAGGAACAGAAGAGGGTGAGTTGCACAATATGAGAATGATTCGA
TCACATTTTCCATTTTCACTGGTCCATAGATAATATACCCACAGACACGG
GGAGCTCAAAACTCCAGTAGTTAATGCGTTGTCTAGATTACTAGAGAGCA
AATACACATCGCAAAATCGCCAACAGGGCCCGCGACAAATGTGCACGACC
CCAAATACGTAGGTGACGGGGTACGTTGGTCTATCAAGATGGCGAAAGGG
TCCACTCATTGTAGGTGCACCGAGTAGTGATACATGCGGAATGAGTCGGT
ACACGTGGACTGCATTTTATCCCCTAATGTGACAATCGGAGCCTCGTTCT
GCCTGCCCACTTCGATAGTGGCGGCGTCAGGGTGACAATCCGAAACAGAA
TATCGTCATTTTTGATGGATGGCTTCAAGAATAACTACGTGGAATGTCGT
TGCTGACGATTCGCTCCAATTTCGAAATGACCAGAGATGATCACGTGGAA
GTTTATTTGATTACTCGCAAGGTCTGTTGCTCGAGATAAGGTCATTGTTC
TGTCACCTTTTCATTTAGAGACGGTCAAATGTGGACTTTGGATTCAGCGC
TGGTACTGTCAAGATATGCATTTGGGTACGGTTTTAGAACACTTGAGTTT
ACATCACCTAGAAATAACGAACTATACGCCGATTTTTATCCTTGACCAGT
TGGCTTCATAATTTCCCTTATTTCGTCCGTAGCTCTCTTGATGACTTGAA
CGTTTTTGATTTTCAATAAAACAAAGGACGCGGAACATGTGACAACTTGA
AAATATTGCGAAGAGCAGTAATATGCTTGTTACTCGGTTGTGCAAAGGGT
ACAAACGATTGATACGTATTTTTCCAGGACGACCTTTTATTCCGCCCTCG
TTCCACTTAAATTCCGATCAGCGCAATGATGTAGCTACTTGTCAGAGCGG
TAGAACACTCCTGATATGTCATATTTATCGAAATCCAAGTTTAGCGAAGG
GTTACACGAAGTACAACCTAAAACTGTCATCATCTTGGCGAGCTAATATC
TGGAATATCGAGTGTTGAGGTACGTGCGAGGGTGAAGATTAGTCCCGCTG
GTCACCGATATTTCAAATCATCGCAAATTGAGTTTCATGTTTCGCTTGTG
GCAATATGTACTTGCAATCGATGAGGGTCATCATACCTAACGATTGTTCA
AGTGCGGGCACAATGTGATTCTTCAAACAAGATGGTGTCGACGCTTGTCC
AGTCCTCGAAATGTACTCAATTTTCATGTCATATGTGGGTCTTGAGCGTA
CACCGCTGAAATCCTTGTAGTCAACTTTCTGCACAGATCTCACATGATCT
GAAGGAGGATTCAGGTGGGACTAACCTTTGTGAAGCGCGTGCTTAGCTTA
TTGCGGCGGTGGTTGATGTACACTTTGACGTTGTGCCATTTGTAATGTGA
AAAATTGAAGATTATTAAAGATTTTTCATGACTTGTGTCTAACCGGCGTA
ACCTGCAGGCGATCGAGCTTAACAATGGTCGTGCGGCCCAGATGGGCATC
CTCGGCATGATGGCCCATGAGCAGATCTCGAATCAGCCCTACATCATCAA
CGATTTGCTGGGCGCATCGTACACCTTCAACTAATCTAAGGGAATATAGT
GTATGGAGTAGTTGGAGGTGGTGCCGCAGGGGCGGCGAATGGCGACGAAC
GTTGTTTAGGTAGCGCGTTTTTTTGGGGGGGAGGGGAGGACTGATGAATT
TTACGCCGTGATTATCCCGGCAACCGTGGCGTTTTGCAGCTAGAATTGTC
ACCCTTTGGGCCGTTTGTGACAGTAGGATGATTTACCGGCTGCAGTGGTT
GCAGTTCAGTAGTGCGAGCTAAACGTTTTGACCATGAACCTGGGTTTGCA
GTGCCCGAAGAATGCCTTAATTTTACATGTTGCCTCGCTGTGTCGGAGAG
TTGCCGTATGCTGTTCTTACAAACAAGTTTAGATCATCTTCCCGACCATG
TTATGGAGCTGCCTCTACATGAGGCGAGCAAGGTCGTATCACTTTTGGAT
TAGAGTAGATTCGGCCCGGGTATCTTGCCTGTCGGTCTATACTTTACAGT
GTCGACGGAATGTACCATCTATGTACGCTCGTCGATTACGTCTCTTTTCG
ACACGCAGTTTGCGGTATTATGGTTAACAGTTCGACTTTCACCATGAAAC
AAGGATCCTGCGAGAAGTAATCTAATGTGTGGGCCTTCTTGTGAAGGAAG
AAACTGACATTGTCAGGAATGCCAACGTTGAGATGAAACACTGAAATGTT
GAATATAATATATTTCATTCCGAAACAAAAAAGGTTTGTAGTACGTGTCT
ATAAATTCAAAGTTCTAAATCCGGAAAAGGGAATTTGGAGGAAGTCACC
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Coding sequence (CDS) from alignment at H-paniculata_contig4070:1273..5121+

>mRNA_H-paniculata_contig4070.10516.1 ID=mRNA_H-paniculata_contig4070.10516.1|Name=mRNA_H-paniculata_contig4070.10516.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1404bp|location=Sequence derived from alignment at H-paniculata_contig4070:1273..5121+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGATGGAAATGGCTGTTGCTCTTGCTTCCATGGTTTCGGCGTGCGC
TTTCGTGACACCCTCTGCATTTACCGGGAAGGTTGTTGCGTCATCTGTGG
CGTCCTCGTCTGCGCTCTCGATGGCGGCCAAGAACCCAGCGCCGAAGAAA
GGTCCCGTCTCGAGGGAATCTTCGTTTGAGTCGGCCATCGGCGCGCAGCC
GCCCCTTGGTTTTTACGATCCGGCCGGTCTCTTGACGAACGCGGACCAAG
AGAGATGAAGATGGAAATGGCTGTTGCTCTTGCTTCCATGGTTTCGGCGT
GCGCTTTCGTGACACCCTCTGCATTTACCGGGAAGGTTGTTGCGTCATCT
GTGGCGTCCTCGTCTGCGCTCTCGATGGCGGCCAAGAACCCAGCGCCGAA
GAAAGGTCCCGTCTCGAGGGAATCTTCGTTTGAGTCGGCCATCGGCGCGC
AGCCGCCCCTTGGTTTTTACGATCCGGCCGGTCTCTTGACGAACGCGGAC
CAAGAGAGGTTTGAACGTCTTCGTTACGTAGAGATCAAGCACGGCCGTAT
CTCCATGCTCGCCATCGCGGGGCACCTGATTCAGCAGAACTTTCGCCTCC
CGGGTTTGAACGTCTTCGTTACGTAGAGATCAAGCACGGCCGTATCTCCA
TGCTCGCCATCGCGGGGCACCTGATTCAGCAGAACTTTCGCCTCCCGGGC
ATGCTTTCCACATCGGCCGACATTTCGTTCGCCGACATGCCTAATGGTGT
CGCTGCGTTGTCGAAGATCCCCCCGCTCGGCCTCTTCCAAATCATCGCCT
TTATCGGGTTCCTTGAGCTGGGTGTGATGAAGCAGAAGGAGGGCTCTTTC
CCAGGAGATATGACCTTGGCGGGCGAGCCCTACGCGTGGACCAAGTGGAG
TGACGAGGTCAAGGAACAGAAGAGGGCATGCTTTCCACATCGGCCGACAT
TTCGTTCGCCGACATGCCTAATGGTGTCGCTGCGTTGTCGAAGATCCCCC
CGCTCGGCCTCTTCCAAATCATCGCCTTTATCGGGTTCCTTGAGCTGGGT
GTGATGAAGCAGAAGGAGGGCTCTTTCCCAGGAGATATGACCTTGGCGGG
CGAGCCCTACGCGTGGACCAAGTGGAGTGACGAGGTCAAGGAACAGAAGA
GGGCGATCGAGCTTAACAATGGTCGTGCGGCCCAGATGGGCATCCTCGGC
ATGATGGCCCATGAGCAGATCTCGAATCAGCCCTACATCATCAACGATTT
GCTGGGCGCATCGTACACCTTCAACTAAGCGATCGAGCTTAACAATGGTC
GTGCGGCCCAGATGGGCATCCTCGGCATGATGGCCCATGAGCAGATCTCG
AATCAGCCCTACATCATCAACGATTTGCTGGGCGCATCGTACACCTTCAA
CTAA
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