prot_H-paniculata_contig4067.10508.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4067.10508.1
Unique Name	prot_H-paniculata_contig4067.10508.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	224

Homology

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 329 bits (843), Expect = 3.530e-112
Identity = 167/218 (76.61%), Postives = 190/218 (87.16%), Query Frame = 0

Query:    6 QTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            Q F  S A L+ SS+AF+ P A +R A PAS SSS++KMSAG+DYVATLPGAPFGDGKIFDPL LSDGADPADIK+WREAEIKHGRV+MLA+LGVLVAEQ+HPLFMGPDYIGPAVDHFQEI+AQYP+FWV +LLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P+D   L +M+TKELNNGRLAMIGIAGMLVQEL++P  ILG
Sbjct:    5 QLFLGSAATLIASSTAFVAPMA-VRSAAPAS-SSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 315 bits (808), Expect = 7.770e-107
Identity = 161/223 (72.20%), Postives = 188/223 (84.30%), Query Frame = 0

Query:    1 MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            M  S+  F  + A L+ SS+AF+ P A +R A PAS S+S++KMSAG+DYVATLPGAPFGDGKIFDPL LSDGA+P +IK WREAEIKHGRV+MLA +GV+VAEQ+HPLFMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AFIEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L PKD  GL  MQTKELNNGRLAMIGIAGMLVQELV+P  ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMA-VRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 1.730e-99
Identity = 152/217 (70.05%), Postives = 180/217 (82.95%), Query Frame = 0

Query:    6 QTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 222
            Q F  + AAL+ SS+AF+ P A +R A PASA+S+ +KMSAG+DYVATLPGAPF DGKIFDPL LSDGA P DIK+WREAEIKHGRV+MLA+LG+LVAE++HPLFMG D+IGPA+ HFQEI+AQ+P+FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P     L +M+TKELNNGRLAMIGIAGML QELV+   IL
Sbjct:    5 QMFLGTAAALIASSTAFVAPVA-VRSAAPASAASA-LKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 285 bits (728), Expect = 1.040e-94
Identity = 150/223 (67.26%), Postives = 178/223 (79.82%), Query Frame = 0

Query:    1 MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            M  S+  F  + A L+ SS+AF+TP A +R A PAS S+S++KMSAG DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRV+MLA +GV+VAEQ+HP FMGPDYIGPAVDHFQEITA++PQFW  +LLG+AFIEYN I  A+AEP  +TGE GL+++Y PGDLGFDP  + PKD  GL  MQ KELNNGRLAMIGI GMLVQELV+   ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMA-VRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 276 bits (706), Expect = 1.360e-90
Identity = 133/203 (65.52%), Postives = 165/203 (81.28%), Query Frame = 0

Query:   21 AFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            AF+ P  +   ARP   +S++ +MSAG+DYV+TLPGAPF DGK++DP+GLS  ADP DIK+WREAEIKHGRV+MLA++GVLVAE FHPLF+GPDYIGPA+ HF+EITA++PQFW   LL IA++EY QI   FAE   +TGE G++ DY+PGDLGFDPLGL P+D   L +M+TKELN+GRLAMIGI GM+VQELV P+ I G
Sbjct:   72 AFIVPTPTTLSARP---TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 263 bits (671), Expect = 2.300e-86
Identity = 122/161 (75.78%), Postives = 140/161 (86.96%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AF+EYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 265 bits (676), Expect = 2.120e-84
Identity = 124/161 (77.02%), Postives = 140/161 (86.96%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 249 bits (636), Expect = 2.620e-81
Identity = 117/160 (73.12%), Postives = 136/160 (85.00%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 222
            KIFDPLGL+DGA+  DIK WREAEIKHGRV+MLA+LGVLVAE++HP FMGPDYIGPAVDHFQEI+A++P+FW  +LL +A IEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L P D   L  MQTKELNNGRLAMIGIAG LVQELV+P +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 2.640e-77
Identity = 133/218 (61.01%), Postives = 151/218 (69.27%), Query Frame = 0

Query:    6 QTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 223
            Q F  + A L+ SS+AF+ P A   V    + SS  +KMSAG+DYVATLPGAPF DGKIFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAE                            FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:    5 QMFIGTAATLIASSTAFVAPMAVRSVTT--TPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.570e-75
Identity = 125/220 (56.82%), Postives = 158/220 (71.82%), Query Frame = 0

Query:    6 QTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFG---DGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 222
            Q F  + A L+ SS+AF+ P A+ R +    A+SS+ KM+AG+DY A+LPGAPFG   +GK FDP GL+   DP  IK+WREAE+KHGRVSMLAA+G+LV+E FHPLFMGP YIGPAV+H Q+I   YP FWVA+L  IAFIE   I  A+     +TG   LK +Y PGDLGFDPLGL PKD +   ++Q++EL+ GR AMIG+ GM+VQE+V    IL
Sbjct:    5 QLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	3.530e-112	76.61	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	7.770e-107	72.20	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	1.730e-99	70.05	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	1.040e-94	67.26	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	1.360e-90	65.52	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	2.300e-86	75.78	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	2.120e-84	77.02	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q7_ECTSI	2.620e-81	73.13	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	2.640e-77	61.01	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7FQG7_ECTSI	1.570e-75	56.82	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 41..223 e-value: 4.7E-38 score: 132.8
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 53..214 e-value: 2.0E-38 score: 132.5
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 12..217
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 5..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..223
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..4
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.606
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 56..222
None	No IPR available	TMHMM	TMhelix		coord: 7..29
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 12..217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4067	contig	H-paniculata_contig4067:12545..14910 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4067.10508.1	mRNA_H-paniculata_contig4067.10508.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4067 12098..15601 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4067.10508.1 ID=prot_H-paniculata_contig4067.10508.1|Name=mRNA_H-paniculata_contig4067.10508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADY
VATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGV
LVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQIT
TAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNG
RLAMIGIAGMLVQELVSPVSILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln