mRNA_H-paniculata_contig4067.10508.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4067.10508.1
Unique NamemRNA_H-paniculata_contig4067.10508.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 1.980e-106
Identity = 167/220 (75.91%), Postives = 191/220 (86.82%), Query Frame = 1 
Query:  457 SAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            + Q F  S A L+ SS+AF+ P A +R A PAS SSS++KMSAG+DYVATLPGAPFGDGKIFDPL LSDGADPADIK+WREAEIKHGRV+MLA+LGVLVAEQ+HPLFMGPDYIGPAVDHFQEI+AQYP+FWV +LLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P+D   L +M+TKELNNGRLAMIGIAGMLVQEL++P  ILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAPMA-VRSAAPAS-SSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 316 bits (809), Expect = 1.840e-101
Identity = 161/223 (72.20%), Postives = 188/223 (84.30%), Query Frame = 1 
Query:  448 MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            M  S+  F  + A L+ SS+AF+ P A +R A PAS S+S++KMSAG+DYVATLPGAPFGDGKIFDPL LSDGA+P +IK WREAEIKHGRV+MLA +GV+VAEQ+HPLFMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AFIEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L PKD  GL  MQTKELNNGRLAMIGIAGMLVQELV+P  ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAPMA-VRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 297 bits (760), Expect = 4.460e-94
Identity = 152/219 (69.41%), Postives = 182/219 (83.11%), Query Frame = 1 
Query:  457 SAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 1113
            ++Q F  + AAL+ SS+AF+ P A +R A PASA+S+ +KMSAG+DYVATLPGAPF DGKIFDPL LSDGA P DIK+WREAEIKHGRV+MLA+LG+LVAE++HPLFMG D+IGPA+ HFQEI+AQ+P+FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P     L +M+TKELNNGRLAMIGIAGML QELV+   IL
Sbjct:    3 ASQMFLGTAAALIASSTAFVAPVA-VRSAAPASAASA-LKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 285 bits (729), Expect = 1.560e-89
Identity = 150/223 (67.26%), Postives = 178/223 (79.82%), Query Frame = 1 
Query:  448 MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            M  S+  F  + A L+ SS+AF+TP A +R A PAS S+S++KMSAG DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRV+MLA +GV+VAEQ+HP FMGPDYIGPAVDHFQEITA++PQFW  +LLG+AFIEYN I  A+AEP  +TGE GL+++Y PGDLGFDP  + PKD  GL  MQ KELNNGRLAMIGI GMLVQELV+   ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTPMA-VRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
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BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 3.510e-85
Identity = 133/203 (65.52%), Postives = 165/203 (81.28%), Query Frame = 1 
Query:  508 AFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            AF+ P  +   ARP   +S++ +MSAG+DYV+TLPGAPF DGK++DP+GLS  ADP DIK+WREAEIKHGRV+MLA++GVLVAE FHPLF+GPDYIGPA+ HF+EITA++PQFW   LL IA++EY QI   FAE   +TGE G++ DY+PGDLGFDPLGL P+D   L +M+TKELN+GRLAMIGI GM+VQELV P+ I G
Sbjct:   72 AFIVPTPTTLSARP---TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 262 bits (670), Expect = 4.620e-81
Identity = 122/161 (75.78%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:  634 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AF+EYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 264 bits (675), Expect = 4.420e-79
Identity = 124/161 (77.02%), Postives = 140/161 (86.96%), Query Frame = 1 
Query:  634 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQ+P+FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 249 bits (635), Expect = 4.000e-76
Identity = 117/160 (73.12%), Postives = 136/160 (85.00%), Query Frame = 1 
Query:  634 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 1113
            KIFDPLGL+DGA+  DIK WREAEIKHGRV+MLA+LGVLVAE++HP FMGPDYIGPAVDHFQEI+A++P+FW  +LL +A IEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L P D   L  MQTKELNNGRLAMIGIAG LVQELV+P +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 239 bits (611), Expect = 2.310e-72
Identity = 133/220 (60.45%), Postives = 153/220 (69.55%), Query Frame = 1 
Query:  457 SAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSILG 1116
            ++Q F  + A L+ SS+AF+ P A   V    + SS  +KMSAG+DYVATLPGAPF DGKIFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAE                            FW  +LLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P D   L +M+TKELNNGRLAMIGIAGML QELV+P  ILG
Sbjct:    3 ASQMFIGTAATLIASSTAFVAPMAVRSVTT--TPSSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 236 bits (603), Expect = 1.280e-70
Identity = 125/222 (56.31%), Postives = 160/222 (72.07%), Query Frame = 1 
Query:  457 SAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADYVATLPGAPFG---DGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNGRLAMIGIAGMLVQELVSPVSIL 1113
            ++Q F  + A L+ SS+AF+ P A+ R +    A+SS+ KM+AG+DY A+LPGAPFG   +GK FDP GL+   DP  IK+WREAE+KHGRVSMLAA+G+LV+E FHPLFMGP YIGPAV+H Q+I   YP FWVA+L  IAFIE   I  A+     +TG   LK +Y PGDLGFDPLGL PKD +   ++Q++EL+ GR AMIG+ GM+VQE+V    IL
Sbjct:    3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4067.10508.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI1.980e-10675.91Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI1.840e-10172.20Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI4.460e-9469.41Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI1.560e-8967.26Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI3.510e-8565.52Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI4.620e-8175.78Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE4.420e-7977.02LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI4.000e-7673.13Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE2.310e-7260.45LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7FQG7_ECTSI1.280e-7056.31Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4067contigH-paniculata_contig4067:12098..15601 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score329.3
Seed ortholog evalue1.4e-87
Seed eggNOG ortholog2880.D7G7Q6
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons4
Model size1810
Cds size672
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4067.10508.1prot_H-paniculata_contig4067.10508.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4067 12545..14910 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.230701-UTR-H-paniculata_contig4067:12097..125441622930244.230701-UTR-H-paniculata_contig4067:12097..12544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 12098..12544 +
1691481207.5611625-UTR-H-paniculata_contig4067:12097..125441691481207.5611625-UTR-H-paniculata_contig4067:12097..12544Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 12098..12544 +
1622930244.3244135-UTR-H-paniculata_contig4067:14910..156011622930244.3244135-UTR-H-paniculata_contig4067:14910..15601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 14911..15601 +
1691481207.6103563-UTR-H-paniculata_contig4067:14910..156011691481207.6103563-UTR-H-paniculata_contig4067:14910..15601Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 14911..15601 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.2450266-CDS-H-paniculata_contig4067:12544..128561622930244.2450266-CDS-H-paniculata_contig4067:12544..12856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 12545..12856 +
1691481207.5729136-CDS-H-paniculata_contig4067:12544..128561691481207.5729136-CDS-H-paniculata_contig4067:12544..12856Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 12545..12856 +
1622930244.2600033-CDS-H-paniculata_contig4067:13400..134841622930244.2600033-CDS-H-paniculata_contig4067:13400..13484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 13401..13484 +
1691481207.5833564-CDS-H-paniculata_contig4067:13400..134841691481207.5833564-CDS-H-paniculata_contig4067:13400..13484Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 13401..13484 +
1622930244.2915947-CDS-H-paniculata_contig4067:14131..143441622930244.2915947-CDS-H-paniculata_contig4067:14131..14344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 14132..14344 +
1691481207.5907168-CDS-H-paniculata_contig4067:14131..143441691481207.5907168-CDS-H-paniculata_contig4067:14131..14344Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 14132..14344 +
1622930244.3109772-CDS-H-paniculata_contig4067:14847..149101622930244.3109772-CDS-H-paniculata_contig4067:14847..14910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 14848..14910 +
1691481207.6002629-CDS-H-paniculata_contig4067:14847..149101691481207.6002629-CDS-H-paniculata_contig4067:14847..14910Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 14848..14910 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4067.10508.1

>prot_H-paniculata_contig4067.10508.1 ID=prot_H-paniculata_contig4067.10508.1|Name=mRNA_H-paniculata_contig4067.10508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MKTSAQTFFASIAALVTSSSAFLTPAASLRVARPASASSSSVKMSAGADY
VATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGV
LVAEQFHPLFMGPDYIGPAVDHFQEITAQYPQFWVAALLGIAFIEYNQIT
TAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDVDGLTIMQTKELNNG
RLAMIGIAGMLVQELVSPVSILG*
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mRNA from alignment at H-paniculata_contig4067:12098..15601+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4067.10508.1 ID=mRNA_H-paniculata_contig4067.10508.1|Name=mRNA_H-paniculata_contig4067.10508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=3504bp|location=Sequence derived from alignment at H-paniculata_contig4067:12098..15601+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
CGCCGAGAGAAATACAAGACATAAAAATATTGTCTATTTCCGTTTCATTC
GAGGAGCCTAACGACCACGTAGAGTCACTCAGTAGTAGAGTCAGCCTCAC
TATAATGTATGACTCTCTTCATTTAATATCGTACTTTGTATACTGTCCTC
CCTTATAACGCAGAACTTTCACCCACTGGCCGCTAGATAAATTACCGTAG
CGAGCACACGCGTTGGAGCTCATTGGCTTATTTTATTTTCGAGTTCATCG
CGTCGCCGCTTCACATACGAAAACTGAATCAGCCTCGTCATTCGCAAAAA
TATCGCGAGTTGGCCACACATCTCTTCGCCAGCCCCCAACTCCGCACAAC
ACTCAACGCACAACCCACAACCCACAACCCACATCAATAAGCCATTCCAA
GAAACTCTCGCAAGTTCCAACTTTTCCTCTTTTACCTCATCAGCATCATG
AAGACCTCCGCACAGACGTTCTTCGCCTCGATAGCCGCCCTGGTTACATC
CTCCAGTGCCTTTCTTACGCCTGCGGCTTCTCTTCGCGTGGCCCGCCCTG
CTTCTGCATCCTCCTCCAGCGTGAAGATGAGCGCGGGCGCTGACTACGTC
GCGACTCTGCCCGGAGCGCCGTTTGGTGATGGCAAGATCTTTGATCCTCT
CGGCCTGTCCGACGGCGCTGATCCCGCAGATATCAAGAGGTGGCGCGAGG
CGGAGATCAAGCACGGCCGTGTGTCGATGCTTGCTGCACTTGGTGTCCTT
GTTGCCGAGGTGAGAATAAAAGAAGTTGTCATGTGGTCGACAGTTGAAGA
GTCCGTTGTGTACGAAAGTGTGATGGGAAGGATGCAACTGACTGTGCCTG
CTCGGTTCTCGAGATGTTTTGTAAACCTCGCGGTTTGTTTCTTACAGGCG
GCACACTCTTGTTGCCACTGTGTTGTTTCATCGACGGCGCCCCAATGCGA
TGGTATACAATACAGAAAATAATTATAATTGCACCACCAGATATTTTCCA
ACGCGGTTAGAAGATTCAGGATTCAGTGTACAGTTGGTCAGTGGGGAGTT
TGCAGACGTTTGGGTGGCAGATTACGATTTGAGAAGAGGTTTGCAGCACG
TCACGGCACTCTCCAGAGACCCAAGGGAAGAATGGATACGGCATAAGCAG
CGAGTATGCAAAGGTCTCGAATTGCACCAGTTGTCAGTTAGCCTGGCAAC
CCTTGCATATGTTATACATTCAGTAGATACCATGTCAAGTCTCCTTTCCG
TCATTTCTTCCGTCTTCGGGAATTCTCGTCCCATTTTGTTTGTATGCGCC
CAGCAATTCCACCCGTTGTTCATGGGCCCGGACTACATCGGCCCTGCCGT
TGACCACTTCCAGGAGATCACTGCTCAGTACCCCCAGGTGATCGATGTAC
TCAGCAAGTTCATGTTAGTGGAGCGTTTTTTTTCCTGTGGCTGCGAGCTG
GTGCTGGTACATTTCTTCAGCGTGACACATATTTCGCCATTTTTTGGAAA
TTTTTTTAACCAAAAACCCTTGGAAGTGCCCATTTGAAGTGAAACCATTC
GATTTTATTTCAGTCTCCTTCACGTGTATGGTTTGTACATGCAGCCAATA
TTTTCAGACACCCGCTCTTTCACCAAAAAGAGCGGCTGCATGAGAGTGTG
ATGGAAAACGGCCGGGCACTGTCCGAAAGGCGACGATAGGATATGGCGTA
TATCGTTTTGAGATTTTTCAAGGAGTCAACGTATGTCGACGTCAATTTAT
GTCACACTGAATCTGTCAAAGGGCCCAGCCAGCAGTGATTTTGTTCCATC
TGCGGTGGTTTGCCATGCATGCTTTTGTCTCTTCCTCTCAAATCTAAAGC
AAAGAACGGCCGAAAGTCTGGCCCGCAACATTCACCTCATTAAACAGCAA
CGTGAGAAAATGGCATACAATCAATCCATGTCCTATTTCGTACGGCACTC
AAGCCAAGACACGCCATGCTCGTGTGCGTTGAACTAAACACACGCGGATC
CCATATGGGCGTCGACTCTTCGCCCATGCGACAGTTCTGGGTGGCGGCCC
TCCTCGGCATCGCGTTTATCGAGTACAACCAGATCACCACGGCCTTTGCG
GAGCCCGGATCGATGACTGGCGAGGCTGGGCTGAAGGAGGACTACATGCC
AGGAGACCTCGGATTTGACCCTCTCGGCCTCATGCCCAAGGATGTGGACG
GTCTTACCATCATGCAGACTAAGGAGCTCAACAACGGACGCTTGGCGGTG
AGTGTTCTGATTCCCTCATGAACCGAGCAGCGTTTTGGGGGGTACGTATG
AACTGTGCCCGATTTTATTGAAGGAAAGGCTCATGAGATGTCGCATATTG
GACCGCATGACAAGGAGGATGTTCTTAAAGAAGCGCTGAACTAGGAAATG
TAGCTCACTTGCGTACGAGGCTAGAGATTAGCAGGTTAAGTAGTATAGAA
GGCACCAAGATAATATTTGTCCCCGGAAGAAATGAGAAATTGATGACGCC
ACCAGTCAGCATCATACCCCTGTCGAATTCGTGATTTTAGTGACCACCTT
GAATTGATCCATCCCCGATAGCTCCAACCCTCACAGCCAATAAAGCATTT
TTTTAACTCTCTGGCGACCTACGAGGTACCCTCCGATCATTCCCTACTTT
AATTACCTATGTGTGACCACTACCCAGCTCGCTGCTTATCCATTGTACCT
CGATACTTACCGGCGTCTTCGTTGCATTTGTCTCGCTTCTTGTTTTGCAG
ATGATTGGCATTGCTGGCATGCTTGTACAAGAGCTTGTGAGCCCGGTCAG
CATCCTTGGTTAAGATTCGTTGTTGAATCTTTCATGAGTTGGGAAACTGT
ACTTTCGGTACCTTTCTTTTTATGTAGTAGATCAGCTTTTCTGCAATTTC
AAGTATACGGGCGCAAATTCTCGTATGCGCTACGAGGATGCAAACAGCGG
ATGCTTATGAACTTTCCCGCTTTACAAATGTTGGCATTGTTTTAGTGGAA
TGTAGTTCCCCTCTTCTCCTTGTTATGTAAAAAATCGAGGAAGGAAACGA
CTTGCTGAGCAATTTGTAGGGCTAGATCGTGTCGAGTAAGCAATGTAATA
TTATTTCTTGTGAAGATTTATTCTGATTGTACAGGCTCATATGACTGACC
TGCATCGTAATCGCGAGTTCGGTAAGGGCAAGGAAGGAATATAGTGTACT
CTCTCGACTGTTTCTAGCCCAGGACAAATCAGGAACTTGAAGTAGAAGGA
CACCATGAAATCTCTCCTTTCCCCCCTCTCGCCATGAGGGAGAACATCAG
GTGCTCCCGATCATAGCCCGGTTGAGCATAGTCACCCCTCTCTGGCGAGT
GTGATGCTGAACCCTCTGAGTGCGTAACATGTGCGCTACAACCTTGGCCA
TAACACTGATCTCCAGCTGTCATTGAATGTAATCCAGTATCGCATTATCC
TAATTGTCAAAAACTGTTCACCACCCAAGAGAAAGTCTGCAAGCCAATAT
GCCG
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Coding sequence (CDS) from alignment at H-paniculata_contig4067:12098..15601+

>mRNA_H-paniculata_contig4067.10508.1 ID=mRNA_H-paniculata_contig4067.10508.1|Name=mRNA_H-paniculata_contig4067.10508.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig4067:12098..15601+ (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACCTCCGCACAGACGTTCTTCGCCTCGATAGCCGCCCTGGTTAC
ATCCTCCAGTGCCTTTCTTACGCCTGCGGCTTCTCTTCGCGTGGCCCGCC
CTGCTTCTGCATCCTCCTCCAGCGTGAAGATGAGCGCGGGCGCTGACTAC
GTCGCGACTCTGCCCGGAGCGCCGTTTGGTGATGGCAAGATCTTTGATCC
TCTCGGCCTGTCCGACGGCGCTGATCCCGCAGATATCAAGAGGTGGCGCG
AGGCGGAGATCAAGCACGGCCGTGTGTCGATGCTTGCTGCACTTGGTGTC
CTTGTTGCCGAGATGAAGACCTCCGCACAGACGTTCTTCGCCTCGATAGC
CGCCCTGGTTACATCCTCCAGTGCCTTTCTTACGCCTGCGGCTTCTCTTC
GCGTGGCCCGCCCTGCTTCTGCATCCTCCTCCAGCGTGAAGATGAGCGCG
GGCGCTGACTACGTCGCGACTCTGCCCGGAGCGCCGTTTGGTGATGGCAA
GATCTTTGATCCTCTCGGCCTGTCCGACGGCGCTGATCCCGCAGATATCA
AGAGGTGGCGCGAGGCGGAGATCAAGCACGGCCGTGTGTCGATGCTTGCT
GCACTTGGTGTCCTTGTTGCCGAGCAATTCCACCCGTTGTTCATGGGCCC
GGACTACATCGGCCCTGCCGTTGACCACTTCCAGGAGATCACTGCTCAGT
ACCCCCAGCAATTCCACCCGTTGTTCATGGGCCCGGACTACATCGGCCCT
GCCGTTGACCACTTCCAGGAGATCACTGCTCAGTACCCCCAGTTCTGGGT
GGCGGCCCTCCTCGGCATCGCGTTTATCGAGTACAACCAGATCACCACGG
CCTTTGCGGAGCCCGGATCGATGACTGGCGAGGCTGGGCTGAAGGAGGAC
TACATGCCAGGAGACCTCGGATTTGACCCTCTCGGCCTCATGCCCAAGGA
TGTGGACGGTCTTACCATCATGCAGACTAAGGAGCTCAACAACGGACGCT
TGGCGTTCTGGGTGGCGGCCCTCCTCGGCATCGCGTTTATCGAGTACAAC
CAGATCACCACGGCCTTTGCGGAGCCCGGATCGATGACTGGCGAGGCTGG
GCTGAAGGAGGACTACATGCCAGGAGACCTCGGATTTGACCCTCTCGGCC
TCATGCCCAAGGATGTGGACGGTCTTACCATCATGCAGACTAAGGAGCTC
AACAACGGACGCTTGGCGATGATTGGCATTGCTGGCATGCTTGTACAAGA
GCTTGTGAGCCCGGTCAGCATCCTTGGTTAAATGATTGGCATTGCTGGCA
TGCTTGTACAAGAGCTTGTGAGCCCGGTCAGCATCCTTGGTTAA
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