prot_H-paniculata_contig4067.10507.1 (polypeptide) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_H-paniculata_contig4067.10507.1
Unique Name	prot_H-paniculata_contig4067.10507.1
Type	polypeptide
Organism	Halopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Sequence length	224

Homology

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 334 bits (857), Expect = 2.610e-114
Identity = 170/218 (77.98%), Postives = 194/218 (88.99%), Query Frame = 0

Query:    6 QMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            Q+FL SA  L+ASS AFV P +++R A PAS SSS++ MSAG+DYVATLPGAPFGDGKIFDPL LSDGADPADIK+WREAEIKHGRV+MLA+LGVLVAEQ+HPLFMGPDYIGPAVDHFQEI+AQ+P+FWV SLLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P+DE +L  M+TKELNNGRLAMIGIAGMLVQEL++PA ILG
Sbjct:    5 QLFLGSAATLIASSTAFVAP-MAVRSAAPAS-SSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 323 bits (828), Expect = 7.020e-110
Identity = 165/223 (73.99%), Postives = 191/223 (85.65%), Query Frame = 0

Query:    1 MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            M  S+ MFL +A  L+ASS AFV P +++R A PAS S+S++ MSAG+DYVATLPGAPFGDGKIFDPL LSDGA+P +IK WREAEIKHGRV+MLA +GV+VAEQ+HPLFMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AFIEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L PKD+  L  MQTKELNNGRLAMIGIAGMLVQELV+PA ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAP-MAVRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 305 bits (782), Expect = 7.800e-103
Identity = 157/217 (72.35%), Postives = 183/217 (84.33%), Query Frame = 0

Query:    6 QMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 222
            QMFL +A AL+ASS AFV P +++R A PASA+S+ + MSAG+DYVATLPGAPF DGKIFDPL LSDGA P DIK+WREAEIKHGRV+MLA+LG+LVAE++HPLFMG D+IGPA+ HFQEI+AQFP+FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P  E +L  M+TKELNNGRLAMIGIAGML QELV+   IL
Sbjct:    5 QMFLGTAAALIASSTAFVAP-VAVRSAAPASAASA-LKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 290 bits (743), Expect = 5.450e-97
Identity = 153/223 (68.61%), Postives = 180/223 (80.72%), Query Frame = 0

Query:    1 MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            M  S+ MFL +A  L+ASS AFVTP +++R A PAS S+S++ MSAG DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRV+MLA +GV+VAEQ+HP FMGPDYIGPAVDHFQEITA+FPQFW  SLLG+AFIEYN I  A+AEP  +TGE GL+++Y PGDLGFDP  + PKD+  L  MQ KELNNGRLAMIGI GMLVQELV+   ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTP-MAVRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 278 bits (712), Expect = 1.670e-91
Identity = 141/223 (63.23%), Postives = 172/223 (77.13%), Query Frame = 0

Query:    1 MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            M TS    +  A+   AS  AF+ P  +   ARP   +S++  MSAG+DYV+TLPGAPF DGK++DP+GLS  ADP DIK+WREAEIKHGRV+MLA++GVLVAE FHPLF+GPDYIGPA+ HF+EITA+FPQFW  +LL IA++EY QI   FAE   +TGE G++ DY+PGDLGFDPLGL P+DE  L  M+TKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   52 MVTSTGALVGMASWCFASCEAFIVPTPTTLSARP---TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 267 bits (682), Expect = 4.880e-88
Identity = 126/161 (78.26%), Postives = 142/161 (88.20%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AF+EYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 269 bits (687), Expect = 4.630e-86
Identity = 128/161 (79.50%), Postives = 142/161 (88.20%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 2.770e-83
Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 0

Query:   63 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 222
            KIFDPLGL+DGA+  DIK WREAEIKHGRV+MLA+LGVLVAE++HP FMGPDYIGPAVDHFQEI+A+FP+FW  SLL +A IEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L P D+ +L TMQTKELNNGRLAMIGIAG LVQELV+P +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 246 bits (627), Expect = 9.790e-80
Identity = 138/219 (63.01%), Postives = 154/219 (70.32%), Query Frame = 0

Query:    6 QMFLASATALVASSNAFVTP-AISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 223
            QMF+ +A  L+ASS AFV P A+      P   SS  + MSAG+DYVATLPGAPF DGKIFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAE                            FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:    5 QMFIGTAATLIASSTAFVAPMAVRSVTTTP---SSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192

[Close]

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 237 bits (605), Expect = 7.800e-76
Identity = 127/220 (57.73%), Postives = 157/220 (71.36%), Query Frame = 0

Query:    6 QMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFG---DGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 222
            Q+FL +A  L+ASS AFV P  + R +    A+SS+  M+AG+DY A+LPGAPFG   +GK FDP GL+   DP  IK+WREAE+KHGRVSMLAA+G+LV+E FHPLFMGP YIGPAV+H Q+I   +P FWVASL  IAFIE   I  A+     +TG   LK +Y PGDLGFDPLGL PKD E    +Q++EL+ GR AMIG+ GM+VQE+V    IL
Sbjct:    5 QLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224

The following BLAST results are available for this feature:

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot

BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
D7G7Q6_ECTSI	2.610e-114	77.98	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S1_ECTSI	7.020e-110	73.99	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7Q9_ECTSI	7.800e-103	72.35	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]
D7G7S0_ECTSI	5.450e-97	68.61	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G5B4_ECTSI	1.670e-91	63.23	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
D7G7S5_ECTSI	4.880e-88	78.26	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5JWB4_9PHAE	4.630e-86	79.50	LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T...	[more]
D7G7Q7_ECTSI	2.770e-83	75.00	Light harvesting complex protein n=1 Tax=Ectocarpu...	[more]
A0A6H5K8D0_9PHAE	9.790e-80	63.01	LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A...	[more]
D7FQG7_ECTSI	7.800e-76	57.73	Light harvesting complex protein n=2 Tax=Ectocarpu...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR023329	Chlorophyll a/b binding domain superfamily	GENE3D	1.10.3460.10		coord: 41..223 e-value: 2.1E-39 score: 137.2
IPR022796	Chlorophyll A-B binding protein	PFAM	PF00504	Chloroa_b-bind	coord: 53..214 e-value: 5.2E-41 score: 140.8
None	No IPR available	PANTHER	PTHR21649:SF63		coord: 11..217
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_H_REGION	Signal peptide H-region	coord: 8..16
None	No IPR available	PHOBIUS	NON_CYTOPLASMIC_DOMAIN	Non cytoplasmic domain	coord: 22..223
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_N_REGION	Signal peptide N-region	coord: 1..7
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE	Signal Peptide	coord: 1..21
None	No IPR available	PHOBIUS	SIGNAL_PEPTIDE_C_REGION	Signal peptide C-region	coord: 17..21
None	No IPR available	SIGNALP_EUK	SignalP-noTM	SignalP-noTM	coord: 1..21 score: 0.477
None	No IPR available	SUPERFAMILY	103511	Chlorophyll a-b binding protein	coord: 56..222
IPR001344	Chlorophyll A-B binding protein, plant	PANTHER	PTHR21649	CHLOROPHYLL A/B BINDING PROTEIN	coord: 11..217

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
H-paniculata_contig4067	contig	H-paniculata_contig4067:9125..11579 -

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_H-paniculata_contig4067.10507.1	mRNA_H-paniculata_contig4067.10507.1	Halopteris paniculata Hal_grac_a_UBK monoicous	mRNA	H-paniculata_contig4067 8508..12730 -

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_H-paniculata_contig4067.10507.1 ID=prot_H-paniculata_contig4067.10507.1|Name=mRNA_H-paniculata_contig4067.10507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADY
VATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGV
LVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQIT
TAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNG
RLAMIGIAGMLVQELVSPASILG*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR023329	Chlorophyll_a/b-bd_dom_sf
IPR022796	Chloroa_b-bind
IPR001344	Chloro_AB-bd_pln