mRNA_H-paniculata_contig4067.10507.1 (mRNA) Halopteris paniculata Hal_grac_a_UBK monoicous

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_H-paniculata_contig4067.10507.1
Unique NamemRNA_H-paniculata_contig4067.10507.1
TypemRNA
OrganismHalopteris paniculata Hal_grac_a_UBK monoicous (Halopteris paniculata Hal_grac_a_UBK monoicous)
Homology
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q6_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q6_ECTSI)

HSP 1 Score: 336 bits (862), Expect = 7.620e-110
Identity = 170/220 (77.27%), Postives = 195/220 (88.64%), Query Frame = 1 
Query:  436 SAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            + Q+FL SA  L+ASS AFV P +++R A PAS SSS++ MSAG+DYVATLPGAPFGDGKIFDPL LSDGADPADIK+WREAEIKHGRV+MLA+LGVLVAEQ+HPLFMGPDYIGPAVDHFQEI+AQ+P+FWV SLLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P+DE +L  M+TKELNNGRLAMIGIAGMLVQEL++PA ILG
Sbjct:    3 ATQLFLGSAATLIASSTAFVAP-MAVRSAAPAS-SSSALKMSAGSDYVATLPGAPFGDGKIFDPLNLSDGADPADIKKWREAEIKHGRVAMLASLGVLVAEQYHPLFMGPDYIGPAVDHFQEISAQYPEFWVFSLLGMAFIEYNTIMTAFETPSAVTGEGGLKEDYVPGDLGFDPLNLKPEDEAALDVMKTKELNNGRLAMIGIAGMLVQELINPADILG 220
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S1_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S1_ECTSI)

HSP 1 Score: 326 bits (835), Expect = 9.120e-106
Identity = 165/223 (73.99%), Postives = 191/223 (85.65%), Query Frame = 1 
Query:  427 MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            M  S+ MFL +A  L+ASS AFV P +++R A PAS S+S++ MSAG+DYVATLPGAPFGDGKIFDPL LSDGA+P +IK WREAEIKHGRV+MLA +GV+VAEQ+HPLFMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AFIEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L PKD+  L  MQTKELNNGRLAMIGIAGMLVQELV+PA ILG
Sbjct:    1 MVASSNMFLGTAATLIASSTAFVAP-MAVRSAAPAS-SASALKMSAGSDYVATLPGAPFGDGKIFDPLELSDGAEPGEIKLWREAEIKHGRVAMLATVGVIVAEQYHPLFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTITKAYAEPSPVTGEGGLRDEYSPGDLGFDPLNLKPKDQAGLEKMQTKELNNGRLAMIGIAGMLVQELVNPADILG 221
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q9_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7Q9_ECTSI)

HSP 1 Score: 308 bits (788), Expect = 1.170e-98
Identity = 157/219 (71.69%), Postives = 185/219 (84.47%), Query Frame = 1 
Query:  436 SAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 1092
            ++QMFL +A AL+ASS AFV P +++R A PASA+S+ + MSAG+DYVATLPGAPF DGKIFDPL LSDGA P DIK+WREAEIKHGRV+MLA+LG+LVAE++HPLFMG D+IGPA+ HFQEI+AQFP+FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P  E +L  M+TKELNNGRLAMIGIAGML QELV+   IL
Sbjct:    3 ASQMFLGTAAALIASSTAFVAP-VAVRSAAPASAASA-LKMSAGSDYVATLPGAPFSDGKIFDPLSLSDGAAPGDIKKWREAEIKHGRVAMLASLGILVAEEYHPLFMGKDFIGPAIIHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDGEAALDVMKTKELNNGRLAMIGIAGMLAQELVNGQDIL 219
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S0_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S0_ECTSI)

HSP 1 Score: 293 bits (750), Expect = 4.740e-93
Identity = 153/223 (68.61%), Postives = 180/223 (80.72%), Query Frame = 1 
Query:  427 MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            M  S+ MFL +A  L+ASS AFVTP +++R A PAS S+S++ MSAG DY+ATLPGA   +GKIFD L L+DGADP +IK WREAEIKHGRV+MLA +GV+VAEQ+HP FMGPDYIGPAVDHFQEITA+FPQFW  SLLG+AFIEYN I  A+AEP  +TGE GL+++Y PGDLGFDP  + PKD+  L  MQ KELNNGRLAMIGI GMLVQELV+   ILG
Sbjct:    1 MAASSNMFLGTAATLIASSAAFVTP-MAVRSAAPAS-SASALKMSAGTDYLATLPGA---NGKIFDLLELADGADPGEIKLWREAEIKHGRVAMLATVGVVVAEQYHPFFMGPDYIGPAVDHFQEITAKFPQFWAYSLLGMAFIEYNTIKKAYAEPSPVTGEGGLRDEYSPGDLGFDPAKIKPKDQAGLEKMQNKELNNGRLAMIGIVGMLVQELVNGQDILG 218
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G5B4_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B4_ECTSI)

HSP 1 Score: 283 bits (723), Expect = 3.120e-88
Identity = 147/254 (57.87%), Postives = 181/254 (71.26%), Query Frame = 1 
Query:  340 PSPQQITAHPKLPHCFILHNHXXXXFISN--MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            PS  Q     +L    +LH       +    M TS    +  A+   AS  AF+ P  +   ARP   +S++  MSAG+DYV+TLPGAPF DGK++DP+GLS  ADP DIK+WREAEIKHGRV+MLA++GVLVAE FHPLF+GPDYIGPA+ HF+EITA+FPQFW  +LL IA++EY QI   FAE   +TGE G++ DY+PGDLGFDPLGL P+DE  L  M+TKELN+GRLAMIGI GM+VQELV P  I G
Sbjct:   21 PSSLQQVHFARLAALRLLHTETSNAILKRCVMVTSTGALVGMASWCFASCEAFIVPTPTTLSARP---TSTAARMSAGSDYVSTLPGAPFADGKVWDPVGLSSEADPEDIKKWREAEIKHGRVAMLASVGVLVAENFHPLFLGPDYIGPAIFHFEEITARFPQFWALTLLAIAWLEYRQINIGFAELDPVTGEGGMRLDYVPGDLGFDPLGLAPEDEHELNVMKTKELNHGRLAMIGITGMIVQELVRPLPIFG 271
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7S5_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7S5_ECTSI)

HSP 1 Score: 267 bits (683), Expect = 2.360e-83
Identity = 126/161 (78.26%), Postives = 142/161 (88.20%), Query Frame = 1 
Query:  613 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AF+EYN I TAF  P ++TGE GLKEDY+PGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:   36 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFVEYNTIMTAFDTPSAVTGEGGLKEDYIPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 196
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: A0A6H5JWB4_9PHAE (LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWB4_9PHAE)

HSP 1 Score: 269 bits (688), Expect = 2.320e-81
Identity = 128/161 (79.50%), Postives = 142/161 (88.20%), Query Frame = 1 
Query:  613 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            +IFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAEQ+HP FMGPDYIGPAVDHFQEI+AQFP+FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:  232 QIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAEQYHPFFMGPDYIGPAVDHFQEISAQFPEFWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 392
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7G7Q7_ECTSI (Light harvesting complex protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7Q7_ECTSI)

HSP 1 Score: 254 bits (650), Expect = 1.070e-78
Identity = 120/160 (75.00%), Postives = 139/160 (86.88%), Query Frame = 1 
Query:  613 KIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 1092
            KIFDPLGL+DGA+  DIK WREAEIKHGRV+MLA+LGVLVAE++HP FMGPDYIGPAVDHFQEI+A+FP+FW  SLL +A IEYN IT A+AEP  +TGE GL+++Y PGDLGFDPL L P D+ +L TMQTKELNNGRLAMIGIAG LVQELV+P +IL
Sbjct:   15 KIFDPLGLADGAEVGDIKLWREAEIKHGRVAMLASLGVLVAEEYHPFFMGPDYIGPAVDHFQEISARFPEFWAFSLLALALIEYNTITKAYAEPSFVTGEGGLRDEYSPGDLGFDPLNLKPTDQTALETMQTKELNNGRLAMIGIAGTLVQELVNPTNIL 174
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: A0A6H5K8D0_9PHAE (LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K8D0_9PHAE)

HSP 1 Score: 248 bits (633), Expect = 5.860e-76
Identity = 138/221 (62.44%), Postives = 156/221 (70.59%), Query Frame = 1 
Query:  436 SAQMFLASATALVASSNAFVTP-AISLRLARPASASSSSVMMSAGADYVATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASILG 1095
            ++QMF+ +A  L+ASS AFV P A+      P   SS  + MSAG+DYVATLPGAPF DGKIFDPLGLSDGA P DIK+WREAEIKHGRV+MLA+LGV+VAE                            FW  SLLG+AFIEYN I TAF  P ++TGE GLKEDYMPGDLGFDPL L P DE +L  M+TKELNNGRLAMIGIAGML QELV+PA ILG
Sbjct:    3 ASQMFIGTAATLIASSTAFVAPMAVRSVTTTP---SSPGLKMSAGSDYVATLPGAPFSDGKIFDPLGLSDGAAPGDIKKWREAEIKHGRVAMLASLGVIVAE----------------------------FWAFSLLGMAFIEYNTIMTAFDTPSAVTGEGGLKEDYMPGDLGFDPLNLKPDDEAALDVMKTKELNNGRLAMIGIAGMLAQELVNPADILG 192
[Close]
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Match: D7FQG7_ECTSI (Light harvesting complex protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG7_ECTSI)

HSP 1 Score: 239 bits (611), Expect = 3.960e-72
Identity = 127/222 (57.21%), Postives = 159/222 (71.62%), Query Frame = 1 
Query:  436 SAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADYVATLPGAPFG---DGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGVLVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQITTAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNGRLAMIGIAGMLVQELVSPASIL 1092
            ++Q+FL +A  L+ASS AFV P  + R +    A+SS+  M+AG+DY A+LPGAPFG   +GK FDP GL+   DP  IK+WREAE+KHGRVSMLAA+G+LV+E FHPLFMGP YIGPAV+H Q+I   +P FWVASL  IAFIE   I  A+     +TG   LK +Y PGDLGFDPLGL PKD E    +Q++EL+ GR AMIG+ GM+VQE+V    IL
Sbjct:    3 TSQLFLGTAATLIASSAAFVAPIAAPRSSIARVAASSTPKMTAGSDYAASLPGAPFGMAAEGKYFDPAGLATNQDPETIKKWREAELKHGRVSMLAAVGILVSEVFHPLFMGPAYIGPAVEHAQQIATVYPLFWVASLGMIAFIEGQTIKDAWGTVSPVTGVGNLKTEYYPGDLGFDPLGLAPKDGEDFRLIQSQELDLGRYAMIGVLGMIVQEVVDGKGIL 224
The following BLAST results are available for this feature:
BLAST of mRNA_H-paniculata_contig4067.10507.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7Q6_ECTSI7.620e-11077.27Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S1_ECTSI9.120e-10673.99Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7Q9_ECTSI1.170e-9871.69Light harvesting complex protein n=2 Tax=Ectocarpu... [more]
D7G7S0_ECTSI4.740e-9368.61Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G5B4_ECTSI3.120e-8857.87Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
D7G7S5_ECTSI2.360e-8378.26Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5JWB4_9PHAE2.320e-8179.50LHCP protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 T... [more]
D7G7Q7_ECTSI1.070e-7875.00Light harvesting complex protein n=1 Tax=Ectocarpu... [more]
A0A6H5K8D0_9PHAE5.860e-7662.44LHCP protein n=7 Tax=Ectocarpus TaxID=2879 RepID=A... [more]
D7FQG7_ECTSI3.960e-7257.21Light harvesting complex protein n=2 Tax=Ectocarpu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
H-paniculata_contig4067contigH-paniculata_contig4067:8508..12730 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Halopteris paniculata Hal_grac_a_UBK monoicous2021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score337.8
Seed ortholog evalue3.9e-90
Seed eggNOG ortholog2880.D7G7Q6
KEGG koko:K08914
KEGG Pathwayko00196,ko01100,map00196,map01100
Hectar predicted targeting categorychloroplast
EggNOG free text desc.Chlorophyll A-B binding protein
EggNOG OGs2BEWM@1,2S15M@2759
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00194
Exons5
Model size1715
Cds size672
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.0997038-UTR-H-paniculata_contig4067:8507..91241622930244.0997038-UTR-H-paniculata_contig4067:8507..9124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 8508..9124 -
1691481207.4926548-UTR-H-paniculata_contig4067:8507..91241691481207.4926548-UTR-H-paniculata_contig4067:8507..9124Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 8508..9124 -
1622930244.1765494-UTR-H-paniculata_contig4067:11579..119411622930244.1765494-UTR-H-paniculata_contig4067:11579..11941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 11580..11941 -
1691481207.5419738-UTR-H-paniculata_contig4067:11579..119411691481207.5419738-UTR-H-paniculata_contig4067:11579..11941Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 11580..11941 -
1622930244.1918063-UTR-H-paniculata_contig4067:12666..127301622930244.1918063-UTR-H-paniculata_contig4067:12666..12730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 12667..12730 -
1691481207.5509999-UTR-H-paniculata_contig4067:12666..127301691481207.5509999-UTR-H-paniculata_contig4067:12666..12730Halopteris paniculata Hal_grac_a_UBK monoicousUTRH-paniculata_contig4067 12667..12730 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622930244.1117754-CDS-H-paniculata_contig4067:9124..91871622930244.1117754-CDS-H-paniculata_contig4067:9124..9187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 9125..9187 -
1691481207.5037916-CDS-H-paniculata_contig4067:9124..91871691481207.5037916-CDS-H-paniculata_contig4067:9124..9187Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 9125..9187 -
1622930244.127924-CDS-H-paniculata_contig4067:9408..96211622930244.127924-CDS-H-paniculata_contig4067:9408..9621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 9409..9621 -
1691481207.512932-CDS-H-paniculata_contig4067:9408..96211691481207.512932-CDS-H-paniculata_contig4067:9408..9621Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 9409..9621 -
1622930244.1469615-CDS-H-paniculata_contig4067:10646..107301622930244.1469615-CDS-H-paniculata_contig4067:10646..10730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 10647..10730 -
1691481207.5228682-CDS-H-paniculata_contig4067:10646..107301691481207.5228682-CDS-H-paniculata_contig4067:10646..10730Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 10647..10730 -
1622930244.1638293-CDS-H-paniculata_contig4067:11267..115791622930244.1638293-CDS-H-paniculata_contig4067:11267..11579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 11268..11579 -
1691481207.5326495-CDS-H-paniculata_contig4067:11267..115791691481207.5326495-CDS-H-paniculata_contig4067:11267..11579Halopteris paniculata Hal_grac_a_UBK monoicousCDSH-paniculata_contig4067 11268..11579 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_H-paniculata_contig4067.10507.1prot_H-paniculata_contig4067.10507.1Halopteris paniculata Hal_grac_a_UBK monoicouspolypeptideH-paniculata_contig4067 9125..11579 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_H-paniculata_contig4067.10507.1

>prot_H-paniculata_contig4067.10507.1 ID=prot_H-paniculata_contig4067.10507.1|Name=mRNA_H-paniculata_contig4067.10507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=polypeptide|length=224bp
MKTSAQMFLASATALVASSNAFVTPAISLRLARPASASSSSVMMSAGADY
VATLPGAPFGDGKIFDPLGLSDGADPADIKRWREAEIKHGRVSMLAALGV
LVAEQFHPLFMGPDYIGPAVDHFQEITAQFPQFWVASLLGIAFIEYNQIT
TAFAEPGSMTGEAGLKEDYMPGDLGFDPLGLMPKDEESLATMQTKELNNG
RLAMIGIAGMLVQELVSPASILG*
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mRNA from alignment at H-paniculata_contig4067:8508..12730-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_H-paniculata_contig4067.10507.1 ID=mRNA_H-paniculata_contig4067.10507.1|Name=mRNA_H-paniculata_contig4067.10507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=mRNA|length=4223bp|location=Sequence derived from alignment at H-paniculata_contig4067:8508..12730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
GCCATCACCAAACGGCGCTCCGGGCAGAGTCGCGACGTAGTCAGCGCCCG
CGCTCATCTTCACGCTGGAGGAGGATGCAGAAGCAGGGCGGGCCACGCGA
AGAGAAGCCGCAGGCGTAAGAAAGGCACTGGAGGATGTAACCAGGGCGGC
TATCGAGGCGAAGAACGTCTGTGCGGAGGTCTTCATGATGCTGATGAGGT
AAAAGAGGAAAAGTTGGAACTTGCGAGAGTTTCTTGGAATGGCTTATTGA
TGTGGGTTGTGGGTTGTGGGTTGTGCGTTGAGTGTTGTGCGGAGTTGGGG
GCTGGCGAAGAGATGTGTGGCCAACTCGCGATATTTTTGCGAATGACGAG
GCTGATTCAGTTTTCGTATGTGAAGCGGCGACGCGATGAACTCGAAAATA
AAATAAGCCAATGAGCTCCAACGCGTGTGCTCGCTACGGTAATTTATCTA
GCGGCCAGTGGGTGAAAGTTCTGCGTTATAAGGGAGGACAGTATACAAAG
TACGATATTAAATGAAGAGAGTCATACATTATAGTGAGGCTGACTCTACT
ACTGAGTGACTCTACGTGGTCGTTAGGCTCCTCGAATGAAACGGAAATAG
ACAATATTTTTATGTCTTGTATTTCTCTCGGCGCTTTTTTTTTCTCCCGC
TTTTAAAAAATTATATATGCCGCCTCCTGCGGTGCATTATTTTGAAATAT
TCCGCTCTCGGCTATGTTCAGTTGCTAGCTACCGACAGCAGACCAAGTCT
GCCTTGTTCTAGACACTTTATAACAGTATTACATCTCACATATATTGCAC
ATACGCAATCTGTGTGCTCAGCCTTTGCACTGTGAGAGTCAACCAGCCAG
CCCACCACCAACGATCCTTGCCGTTTCTCAAAACTCAACGAGGCGTTCTG
GTTTTTCAAATTTGCAACATTGACAGATACAGTCATTCACAGTGTCGGGC
TGACTACAATCTGACTCTGTAAATCGCTGACTCTGTGAACTCGCAGAGTC
AGGGTTGGTCAGTAACACGTATACGTACGTAGGGTCATTTCTTGTAACCC
AAACTGCGGCCCTACCTTCTCCACAACAAATAACAGCCCATCCCAAGCTT
CCTCATTGTTTTATTCTCCACAATCACCACCACCACTTCTTCATCAGCAA
CATGAAGACTTCCGCGCAAATGTTCCTTGCTTCAGCCACCGCCCTGGTTG
CATCTTCCAATGCCTTCGTTACGCCTGCGATTTCTCTTCGTTTAGCGCGC
CCTGCGTCTGCATCCTCGTCCAGCGTGATGATGAGTGCGGGCGCTGACTA
CGTTGCGACTCTGCCCGGAGCGCCGTTTGGTGACGGCAAGATCTTCGATC
CCCTTGGCCTGTCTGACGGTGCTGACCCCGCGGACATCAAGAGGTGGCGC
GAGGCGGAGATCAAGCATGGCCGCGTGTCGATGCTTGCTGCACTTGGTGT
CCTTGTTGCCGAGGTGAGGAATAAAAGAAGTCATGTGATGAAAATCTACT
GATACATCTAAGAGTTGTGGCGCAGATGATATCGAGGATTCGAAGGCCTT
CTGTGAACTGCCTAGTTTGGGGACTTTTATTGCCTGGTATCAGAAGGCAC
CTAACCATGTAGACTTCGTTCTACACCCCAGTCATCTTGCGTTACCAGCC
CTCGCTCTCATTGGCATAAGATACGATGTGCACATTCACATTTTCGAGTG
GAGGTTCACCACGAAACACGTTCATGAATGAAACATTCGGCGTACAGTCA
GCAGCGCGCTGCGAATGCACATGAATCAACCGTGCCAGATGAAGTCGATG
TAGCTGGTGATGCGTGTACACCTGGCTTATCACCGGACACCCCCAATTGC
AGCGCGCTCACCATGGGCCGATCTTCGCTCTTCAAAACTCAGCTGAAATG
GACGCACTGCACGGTGTAGACACGTGTCAAGTTATTCGGCATAACTCAAA
GTCTCCCGCGTCTCACGCTTTTTCATGGTTTCCTTTTTTACGAATCACAG
CAATTCCACCCTCTCTTCATGGGCCCTGACTACATCGGCCCTGCCGTGGA
CCACTTCCAGGAGATCACTGCCCAGTTTCCCCAGGTACGAAATCAGCTGC
AGTATGCCAGGCGGATAAATAATGGATAGTACGTAAGGCTTGTTGGACTT
TGTCTACTGTACTAAAATGCGCTCATCGGTGATGCCTCCAGTATTGTATG
GGATACCATACGACCAGTTCGTGTTTCATCTTTGTCCCTGGCCTCCAGTG
AATACTTGTAGCTAGGTATTTTGCGATACGGGCGGGCGATGCTACAACCA
TGGGGAAAGTTAGAAATTTAGAAAGTGCTTCGCGGCGAAGGTGATGATGG
TGTTGATGGGTGGTCGTGAAGTGTAGATTCCAGCCTTGGAGGGCGTCATA
TCCGTCTCAGATGAGGTCGATACAGTGAAGTAGAGTAGAAAGAAGGACGA
GACTTGTGGGTTTCGTTTGCAGCTATTGCGTTTGGTCCATCCCCATTTTA
TTCACGGTATGGTGTGGAATTGTTGATTTTGTTCCAGATCTCAATTCGTG
AAACTAGGCTGTGATGGTTGCGGCATGTTGTTGGATTGCGAAAAACATAT
GTATCCATGGGGGATGCCAGGTACACACATCGGCCATGCACGGAAAGCAT
GGTTGCGACACCTCCCGATATTACTGTACACGGTGATGGCCGGCATCAGT
CGTGTGTATTCTGGACAATAATCCTTGGAGCATTATTTTTTCCTGTGAGA
GAAATGAGTACGTGGTTGTTTTCATCCTAAAAAGCTTTTTCTTGAATGAT
ATCGCGCGTGATCCTTGGTTCATCGTGCAGGCCCCAAGTTTGTTGAATCA
TATGATAGACGTGAAGGCTTTTGGAATCTAACCCGAAGGTGGTCTTCGAG
TGTGTGAGGAGTATAGAGCTATTCTGAACCAGTAGCTAAACGTGCCCTTC
CAGTCCGTCAACAGAGGGTCCTTATGTCCCAGTAAGGTTAACGTGTACTC
ATATCAAAATGAGCGTCCAGATTGTTCACCTAATGTTGAAACAACCCGTG
CTTGTGTGAACTAACGGTGCCATGATCCCTTCCCTACTGAATCTCCCCCT
ACGTGACAGTTCTGGGTGGCGTCCCTCCTCGGCATCGCCTTCATCGAGTA
CAACCAGATCACAACGGCCTTTGCGGAGCCTGGGTCAATGACAGGCGAGG
CAGGCCTGAAGGAAGACTACATGCCGGGAGACCTTGGATTTGACCCTCTC
GGCCTTATGCCCAAGGATGAGGAGAGCCTTGCCACCATGCAGACCAAGGA
GCTCAACAACGGACGCTTAGCGGTGAGTGTTCATGTATGCTTGGAAACAT
TCGGCAAGAATGCTTCATCGATTTGCGCAAGGTCTTTTTGCTGCCCGTAG
GTCTGCATTTATAAAACTGTCTGCGAAAGTCCTAGTGGGACAACGTTGTG
GACGGTGAAGGATGGTTTTGAACTGATACCTTTCCGTGCGATTCCCCTGT
TGCCGTTGCTGTTACATCCGTATGTACGCTCCTTGCTCATCAGATGATCG
GCATTGCTGGTATGCTGGTACAAGAGCTCGTGAGCCCGGCGAGCATCCTC
GGCTAAACTGGGAACTACGAAGATAGAACATTAGAGAAAAACCATTTCCA
TCACGTGGAATATACTTTTGTGGTTCTTGTAAGATTACTTGATGTATATT
ACAGACGAGTGGATATGTTTGCTCAAACGGCAGACCCTTTTTACACTGTC
TTGTAATGTGAAGTTTGTCAGGATTGTTTGAAGGGGCTCGCGTGGTGTTA
CTCGTGTCTAGTTGTCATTTGTGTTGAATTGTACGATAACAGCTAGTGTG
AAATCCGCGGTGGAAGTCTCGGGAAGTCAAGGTCGATGGTTTGAAGCGTA
GTGTGTTTGACTCTTTTCGTGTAAGACTTGTATTCGAATAGCAGATGGTG
GTGTGACTACACGAATTGAATTGGACGAATTCGAAGGTACAAGGCAACAT
GGTCAAGAATAATTCGATGGGATTCTTCAGAATAATTTCTTCCGCCAACC
GACAGGCTAATGTCCACCTATGTAACCTCCACAATCGTACGTACACACGA
GCATGTACTCTTGCCAAAATTGCGCGCATAAATTATGAAACGTTTATTCA
TGCATAGCAACGTATACATATCACTTTGACTGAGGCAGTCGAAAGAAGTG
AATCATCCGCCTGAACCAACCAA
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Coding sequence (CDS) from alignment at H-paniculata_contig4067:8508..12730-

>mRNA_H-paniculata_contig4067.10507.1 ID=mRNA_H-paniculata_contig4067.10507.1|Name=mRNA_H-paniculata_contig4067.10507.1|organism=Halopteris paniculata Hal_grac_a_UBK monoicous|type=CDS|length=1344bp|location=Sequence derived from alignment at H-paniculata_contig4067:8508..12730- (Halopteris paniculata Hal_grac_a_UBK monoicous)
ATGAAGACTTCCGCGCAAATGTTCCTTGCTTCAGCCACCGCCCTGGTTGC
ATCTTCCAATGCCTTCGTTACGCCTGCGATTTCTCTTCGTTTAGCGCGCC
CTGCGTCTGCATCCTCGTCCAGCGTGATGATGAGTGCGGGCGCTGACTAC
GTTGCGACTCTGCCCGGAGCGCCGTTTGGTGACGGCAAGATCTTCGATCC
CCTTGGCCTGTCTGACGGTGCTGACCCCGCGGACATCAAGAGGTGGCGCG
AGGCGGAGATCAAGCATGGCCGCGTGTCGATGCTTGCTGCACTTGGTGTC
CTTGTTGCCGAGATGAAGACTTCCGCGCAAATGTTCCTTGCTTCAGCCAC
CGCCCTGGTTGCATCTTCCAATGCCTTCGTTACGCCTGCGATTTCTCTTC
GTTTAGCGCGCCCTGCGTCTGCATCCTCGTCCAGCGTGATGATGAGTGCG
GGCGCTGACTACGTTGCGACTCTGCCCGGAGCGCCGTTTGGTGACGGCAA
GATCTTCGATCCCCTTGGCCTGTCTGACGGTGCTGACCCCGCGGACATCA
AGAGGTGGCGCGAGGCGGAGATCAAGCATGGCCGCGTGTCGATGCTTGCT
GCACTTGGTGTCCTTGTTGCCGAGCAATTCCACCCTCTCTTCATGGGCCC
TGACTACATCGGCCCTGCCGTGGACCACTTCCAGGAGATCACTGCCCAGT
TTCCCCAGCAATTCCACCCTCTCTTCATGGGCCCTGACTACATCGGCCCT
GCCGTGGACCACTTCCAGGAGATCACTGCCCAGTTTCCCCAGTTCTGGGT
GGCGTCCCTCCTCGGCATCGCCTTCATCGAGTACAACCAGATCACAACGG
CCTTTGCGGAGCCTGGGTCAATGACAGGCGAGGCAGGCCTGAAGGAAGAC
TACATGCCGGGAGACCTTGGATTTGACCCTCTCGGCCTTATGCCCAAGGA
TGAGGAGAGCCTTGCCACCATGCAGACCAAGGAGCTCAACAACGGACGCT
TAGCGTTCTGGGTGGCGTCCCTCCTCGGCATCGCCTTCATCGAGTACAAC
CAGATCACAACGGCCTTTGCGGAGCCTGGGTCAATGACAGGCGAGGCAGG
CCTGAAGGAAGACTACATGCCGGGAGACCTTGGATTTGACCCTCTCGGCC
TTATGCCCAAGGATGAGGAGAGCCTTGCCACCATGCAGACCAAGGAGCTC
AACAACGGACGCTTAGCGATGATCGGCATTGCTGGTATGCTGGTACAAGA
GCTCGTGAGCCCGGCGAGCATCCTCGGCTAAATGATCGGCATTGCTGGTA
TGCTGGTACAAGAGCTCGTGAGCCCGGCGAGCATCCTCGGCTAA
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